>AGRN_RAT (P25304) Agrin precursor|
          Length = 1959

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -3

Query: 175 PPVHQPLRDHPPRPQHRLQCSP*QREAVPVIFKKTPFCSCA*GCCGFRLPVSGAESL 5
           PP HQ   D  P P H +QC+     AV  +      C C   C G   PV G++ +
Sbjct: 349 PPKHQGPCDQTPSPCHGVQCA---FGAVCTVKNGKAECECQRVCSGIYDPVCGSDGV 402

>YQJG_ECOLI (P42620) Hypothetical protein yqjG|
          Length = 328

 Score = 31.6 bits (70), Expect = 0.61
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 177 SHPSINPYGIIPQGPNIDYNAPHDRERLF 91
           SH +INP GII  GP  D + PH R+  F
Sbjct: 299 SHKTINPTGIISIGPWQDLDEPHGRDVRF 327

>TRI2_STRCO (Q9RKB9) Putative tricorn protease homolog 2 (EC 3.4.21.-)|
          Length = 1171

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   IRLSAPDTGKRKPQHPQAHEQNGVFLKITGTAS 101
           +RLS P  G+R  Q P A    G+ +  TG AS
Sbjct: 280 VRLSGPRAGRRTHQVPAAQHVGGISVDETGRAS 312

>SMC3_YEAST (P47037) Structural maintenance of chromosome 3 (DA-box protein|
           SMC3)
          Length = 1230

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 162 NPYGIIPQGPNIDYNAPHDRERLFL 88
           NPY I+PQG  +      D+ERL L
Sbjct: 141 NPYNIVPQGKIVALTNAKDKERLQL 165

>YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 intergenic|
           region
          Length = 366

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 177 SHPSINPYGIIPQGPNIDYNAP 112
           S P +NP GI P GP  D   P
Sbjct: 345 SQPRVNPIGITPLGPKPDIRPP 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,792,495
Number of Sequences: 219361
Number of extensions: 494113
Number of successful extensions: 1818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)