ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C72A1_CATRO (Q05047) Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII... 41 7e-04
2SYT_FRATT (Q5NGL8) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 28 6.4

>C72A1_CATRO (Q05047) Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII) (Secologanin|
           synthase) (SLS)
          Length = 524

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = -3

Query: 219 FSFSLSPRYVHAPMDVITLRPKFGLPMILKSLE 121
           F F ++P YVHAP  ++T++P+FG  +I K LE
Sbjct: 491 FKFDVAPSYVHAPFTILTVQPQFGSHVIYKKLE 523



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>SYT_FRATT (Q5NGL8) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 634

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 52  QNHPFAIRPINKQPCV-VLNTPLH 120
           +N  FAIRP+N   CV V NT LH
Sbjct: 321 ENRDFAIRPMNCPTCVQVYNTKLH 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,582,854
Number of Sequences: 219361
Number of extensions: 622010
Number of successful extensions: 1527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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