Clone Name | rbart54d11 |
---|---|
Clone Library Name | barley_pub |
>gb|AY437442.1| Triticum aestivum cultivar Ning 7840 cytochrome P450 mRNA, complete cds Length = 1620 Score = 143 bits (72), Expect = 3e-31 Identities = 99/108 (91%) Strand = Plus / Minus Query: 114 tctacatctctaggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatca 173 |||||||||| |||||||| |||| ||| |||||||||||||| || ||||||||||||| Sbjct: 1572 tctacatctcgaggctcttgaggaccataggaagcccaaacttaggccgcagcgtgatca 1513 Query: 174 cgtccatcggggcatggacatatctaggtgatagggagaacgagaacc 221 |||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 1512 cgtccatcggggcatgaacatacttaggtgatagggagaacgagaacc 1465
>gb|AY641449.1| Triticum aestivum cultivar Darius cytochrome P450 CYP709C1 (CYP709C1) mRNA, complete cds Length = 1798 Score = 139 bits (70), Expect = 4e-30 Identities = 97/106 (91%) Strand = Plus / Minus Query: 116 tacatctctaggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacg 175 ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 1632 tacatctctaggctcttgaggatcatgggaagcccaaacttaggccgcagcgtgatcaca 1573 Query: 176 tccatcggggcatggacatatctaggtgatagggagaacgagaacc 221 ||||| |||||||||||||| | |||||||||||||| ||||||| Sbjct: 1572 tccatgggggcatggacatactttggtgatagggagaatgagaacc 1527
>ref|XM_477684.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1838 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 125 aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174 |||||||| |||||||| || ||||| ||||||| |||||||||||||| Sbjct: 1662 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 1613
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 125 aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174 |||||||| |||||||| || ||||| ||||||| |||||||||||||| Sbjct: 13272474 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 13272425 Score = 46.1 bits (23), Expect = 0.047 Identities = 41/47 (87%) Strand = Plus / Plus Query: 125 aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgat 171 |||||||| |||||||| || ||||| ||||||| ||||||||||| Sbjct: 13329262 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgat 13329308 Score = 44.1 bits (22), Expect = 0.19 Identities = 43/50 (86%) Strand = Plus / Minus Query: 128 ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177 ||||| |||||||| || |||||| |||| || || |||||||||||||| Sbjct: 26330865 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 26330816
>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0025D09 Length = 142593 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 125 aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174 |||||||| |||||||| || ||||| ||||||| |||||||||||||| Sbjct: 60337 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 60288 Score = 46.1 bits (23), Expect = 0.047 Identities = 41/47 (87%) Strand = Plus / Plus Query: 125 aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgat 171 |||||||| |||||||| || ||||| ||||||| ||||||||||| Sbjct: 117125 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgat 117171
>dbj|AK119557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-106-A06, full insert sequence Length = 1945 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 125 aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174 |||||||| |||||||| || ||||| ||||||| |||||||||||||| Sbjct: 1756 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 1707
>dbj|AK072220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013166A09, full insert sequence Length = 1838 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 125 aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174 |||||||| |||||||| || ||||| ||||||| |||||||||||||| Sbjct: 1662 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 1613
>dbj|AP003745.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1123_B01 Length = 105736 Score = 46.1 bits (23), Expect = 0.047 Identities = 41/47 (87%) Strand = Plus / Plus Query: 125 aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgat 171 |||||||| |||||||| || ||||| ||||||| ||||||||||| Sbjct: 43700 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgat 43746
>ref|NM_193135.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1895 Score = 44.1 bits (22), Expect = 0.19 Identities = 43/50 (86%) Strand = Plus / Minus Query: 128 ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177 ||||| |||||||| || |||||| |||| || || |||||||||||||| Sbjct: 1716 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 1667
>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1332_C12 Length = 67349 Score = 44.1 bits (22), Expect = 0.19 Identities = 43/50 (86%) Strand = Plus / Minus Query: 128 ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177 ||||| |||||||| || |||||| |||| || || |||||||||||||| Sbjct: 50443 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 50394
>dbj|AK121733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033083C10, full insert sequence Length = 1914 Score = 44.1 bits (22), Expect = 0.19 Identities = 43/50 (86%) Strand = Plus / Minus Query: 128 ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177 ||||| |||||||| || |||||| |||| || || |||||||||||||| Sbjct: 1717 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 1668
>dbj|AK106081.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A08, full insert sequence Length = 1895 Score = 44.1 bits (22), Expect = 0.19 Identities = 43/50 (86%) Strand = Plus / Minus Query: 128 ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177 ||||| |||||||| || |||||| |||| || || |||||||||||||| Sbjct: 1716 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 1667
>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence Length = 206737 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 tggattttcttacaaaatcat 60 ||||||||||||||||||||| Sbjct: 71271 tggattttcttacaaaatcat 71251
>gb|AC093607.3| Homo sapiens BAC clone RP11-654J13 from 4, complete sequence Length = 143993 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 attttcttacaaaatcatccatttg 67 |||| |||||||||||||||||||| Sbjct: 524 atttacttacaaaatcatccatttg 500
>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence Length = 173169 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 64 tttgcgataagaccaataaataaac 88 ||||| ||||||||||||||||||| Sbjct: 110150 tttgccataagaccaataaataaac 110174
>gb|AC006052.5|AC006052 Homo sapiens chromosome 4 clone C0281M17 map 4p16.3, complete sequence Length = 166095 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 attttcttacaaaatcatccatttg 67 |||| |||||||||||||||||||| Sbjct: 1477 atttacttacaaaatcatccatttg 1501
>gb|AC166645.4| Mus musculus chromosome 1, clone RP24-355D12, complete sequence Length = 169550 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 tggattttcttacaaaatca 59 |||||||||||||||||||| Sbjct: 42714 tggattttcttacaaaatca 42733
>gb|AC103396.8| Mus musculus chromosome 1, clone RP24-142I5, complete sequence Length = 183930 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 tggattttcttacaaaatca 59 |||||||||||||||||||| Sbjct: 103441 tggattttcttacaaaatca 103460
>gb|AC125340.3| Mus musculus BAC clone RP24-364H15 from chromosome 1, complete sequence Length = 177161 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 caaccttgtgttgtactcaa 107 |||||||||||||||||||| Sbjct: 66726 caaccttgtgttgtactcaa 66707
>emb|AL161578.2|ATCHRIV74 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74 Length = 194920 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cttacaaaatcatccatttg 67 |||||||||||||||||||| Sbjct: 70961 cttacaaaatcatccatttg 70942
>emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project) Length = 122322 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 cttacaaaatcatccatttg 67 |||||||||||||||||||| Sbjct: 7010 cttacaaaatcatccatttg 7029
>gb|AF106582.1| Caenorhabditis elegans cosmid W05F2, complete sequence Length = 34852 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 attttcttacaaaatcatccattt 66 ||||||||||||||| |||||||| Sbjct: 25734 attttcttacaaaattatccattt 25711
>gb|AC008087.11| Homo sapiens chromosome 17, clone RP5-1127L24, complete sequence Length = 104726 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 gatggattttcttacaaaat 57 |||||||||||||||||||| Sbjct: 86212 gatggattttcttacaaaat 86193
>gb|AF258545.2| Homo sapiens chromosome 17 clone PAC P579 HC90, HC71AC, HC6 and HC56 genes, complete sequence Length = 116004 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 gatggattttcttacaaaat 57 |||||||||||||||||||| Sbjct: 74113 gatggattttcttacaaaat 74132
>gb|AF258547.1|AF258547 Homo sapiens chromosome 17 unknown sequence Length = 52586 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 gatggattttcttacaaaat 57 |||||||||||||||||||| Sbjct: 10695 gatggattttcttacaaaat 10714
>gb|AC027455.22| Homo sapiens chromosome 17, clone RP11-411G7, complete sequence Length = 145410 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 gatggattttcttacaaaat 57 |||||||||||||||||||| Sbjct: 132766 gatggattttcttacaaaat 132747
>emb|BX248135.5| Zebrafish DNA sequence from clone CH211-106J4 in linkage group 17, complete sequence Length = 152463 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 attttcttacaaaatcatcc 62 |||||||||||||||||||| Sbjct: 63004 attttcttacaaaatcatcc 63023 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,890,324 Number of Sequences: 3902068 Number of extensions: 1890324 Number of successful extensions: 161561 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 161423 Number of HSP's gapped (non-prelim): 138 length of query: 227 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 205 effective length of database: 17,147,199,772 effective search space: 3515175953260 effective search space used: 3515175953260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)