ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY437442.1| Triticum aestivum cultivar Ning 7840 cytochrome P... 143 3e-31
2gb|AY641449.1| Triticum aestivum cultivar Darius cytochrome P450... 139 4e-30
3ref|XM_477684.1| Oryza sativa (japonica cultivar-group), mRNA 52 8e-04
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
5dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
6dbj|AK119557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
7dbj|AK072220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
8dbj|AP003745.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.047
9ref|NM_193135.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.19
10dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.19
11dbj|AK121733.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.19
12dbj|AK106081.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.19
13gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, comp... 42 0.73
14gb|AC093607.3| Homo sapiens BAC clone RP11-654J13 from 4, comple... 42 0.73
15gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complet... 42 0.73
16gb|AC006052.5|AC006052 Homo sapiens chromosome 4 clone C0281M17 ... 42 0.73
17gb|AC166645.4| Mus musculus chromosome 1, clone RP24-355D12, com... 40 2.9
18gb|AC103396.8| Mus musculus chromosome 1, clone RP24-142I5, comp... 40 2.9
19gb|AC125340.3| Mus musculus BAC clone RP24-364H15 from chromosom... 40 2.9
20emb|AL161578.2|ATCHRIV74 Arabidopsis thaliana DNA chromosome 4, ... 40 2.9
21emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BA... 40 2.9
22gb|AF106582.1| Caenorhabditis elegans cosmid W05F2, complete seq... 40 2.9
23gb|AC008087.11| Homo sapiens chromosome 17, clone RP5-1127L24, c... 40 2.9
24gb|AF258545.2| Homo sapiens chromosome 17 clone PAC P579 HC90, H... 40 2.9
25gb|AF258547.1|AF258547 Homo sapiens chromosome 17 unknown sequence 40 2.9
26gb|AC027455.22| Homo sapiens chromosome 17, clone RP11-411G7, co... 40 2.9
27emb|BX248135.5| Zebrafish DNA sequence from clone CH211-106J4 in... 40 2.9

>gb|AY437442.1| Triticum aestivum cultivar Ning 7840 cytochrome P450 mRNA, complete
            cds
          Length = 1620

 Score =  143 bits (72), Expect = 3e-31
 Identities = 99/108 (91%)
 Strand = Plus / Minus

                                                                        
Query: 114  tctacatctctaggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatca 173
            |||||||||| |||||||| |||| ||| |||||||||||||| || |||||||||||||
Sbjct: 1572 tctacatctcgaggctcttgaggaccataggaagcccaaacttaggccgcagcgtgatca 1513

                                                            
Query: 174  cgtccatcggggcatggacatatctaggtgatagggagaacgagaacc 221
            |||||||||||||||| |||||  ||||||||||||||||||||||||
Sbjct: 1512 cgtccatcggggcatgaacatacttaggtgatagggagaacgagaacc 1465



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>gb|AY641449.1| Triticum aestivum cultivar Darius cytochrome P450 CYP709C1 (CYP709C1)
            mRNA, complete cds
          Length = 1798

 Score =  139 bits (70), Expect = 4e-30
 Identities = 97/106 (91%)
 Strand = Plus / Minus

                                                                        
Query: 116  tacatctctaggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacg 175
            ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| 
Sbjct: 1632 tacatctctaggctcttgaggatcatgggaagcccaaacttaggccgcagcgtgatcaca 1573

                                                          
Query: 176  tccatcggggcatggacatatctaggtgatagggagaacgagaacc 221
            ||||| ||||||||||||||  | |||||||||||||| |||||||
Sbjct: 1572 tccatgggggcatggacatactttggtgatagggagaatgagaacc 1527



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>ref|XM_477684.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1838

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 125  aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174
            |||||||| |||||||| || |||||  ||||||| ||||||||||||||
Sbjct: 1662 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 1613



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 125      aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174
                |||||||| |||||||| || |||||  ||||||| ||||||||||||||
Sbjct: 13272474 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 13272425



 Score = 46.1 bits (23), Expect = 0.047
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 125      aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgat 171
                |||||||| |||||||| || |||||  ||||||| |||||||||||
Sbjct: 13329262 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgat 13329308



 Score = 44.1 bits (22), Expect = 0.19
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                  
Query: 128      ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177
                ||||| |||||||| || |||||| |||| || || ||||||||||||||
Sbjct: 26330865 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 26330816



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>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0025D09
          Length = 142593

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 125   aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174
             |||||||| |||||||| || |||||  ||||||| ||||||||||||||
Sbjct: 60337 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 60288



 Score = 46.1 bits (23), Expect = 0.047
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 125    aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgat 171
              |||||||| |||||||| || |||||  ||||||| |||||||||||
Sbjct: 117125 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgat 117171



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>dbj|AK119557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-106-A06, full
            insert sequence
          Length = 1945

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 125  aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174
            |||||||| |||||||| || |||||  ||||||| ||||||||||||||
Sbjct: 1756 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 1707



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>dbj|AK072220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013166A09, full
            insert sequence
          Length = 1838

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 125  aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcac 174
            |||||||| |||||||| || |||||  ||||||| ||||||||||||||
Sbjct: 1662 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgatcac 1613



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>dbj|AP003745.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1123_B01
          Length = 105736

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 125   aggctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgat 171
             |||||||| |||||||| || |||||  ||||||| |||||||||||
Sbjct: 43700 aggctcttgaggatcatagggagcccgtacttgggacgcagcgtgat 43746



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>ref|NM_193135.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1895

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 128  ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177
            ||||| |||||||| || |||||| |||| || || ||||||||||||||
Sbjct: 1716 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 1667



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>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1332_C12
          Length = 67349

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 128   ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177
             ||||| |||||||| || |||||| |||| || || ||||||||||||||
Sbjct: 50443 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 50394



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>dbj|AK121733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033083C10, full
            insert sequence
          Length = 1914

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 128  ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177
            ||||| |||||||| || |||||| |||| || || ||||||||||||||
Sbjct: 1717 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 1668



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>dbj|AK106081.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A08, full
            insert sequence
          Length = 1895

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 128  ctcttaaggatcatgggaagcccaaacttgggtcgcagcgtgatcacgtc 177
            ||||| |||||||| || |||||| |||| || || ||||||||||||||
Sbjct: 1716 ctcttgaggatcataggcagcccatactttggccgaagcgtgatcacgtc 1667



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>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence
          Length = 206737

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    tggattttcttacaaaatcat 60
             |||||||||||||||||||||
Sbjct: 71271 tggattttcttacaaaatcat 71251



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>gb|AC093607.3| Homo sapiens BAC clone RP11-654J13 from 4, complete sequence
          Length = 143993

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 43  attttcttacaaaatcatccatttg 67
           |||| ||||||||||||||||||||
Sbjct: 524 atttacttacaaaatcatccatttg 500



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>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence
          Length = 173169

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 64     tttgcgataagaccaataaataaac 88
              ||||| |||||||||||||||||||
Sbjct: 110150 tttgccataagaccaataaataaac 110174



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>gb|AC006052.5|AC006052 Homo sapiens chromosome 4 clone C0281M17 map 4p16.3, complete
            sequence
          Length = 166095

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 43   attttcttacaaaatcatccatttg 67
            |||| ||||||||||||||||||||
Sbjct: 1477 atttacttacaaaatcatccatttg 1501



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>gb|AC166645.4| Mus musculus chromosome 1, clone RP24-355D12, complete sequence
          Length = 169550

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tggattttcttacaaaatca 59
             ||||||||||||||||||||
Sbjct: 42714 tggattttcttacaaaatca 42733



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>gb|AC103396.8| Mus musculus chromosome 1, clone RP24-142I5, complete sequence
          Length = 183930

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     tggattttcttacaaaatca 59
              ||||||||||||||||||||
Sbjct: 103441 tggattttcttacaaaatca 103460



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>gb|AC125340.3| Mus musculus BAC clone RP24-364H15 from chromosome 1, complete sequence
          Length = 177161

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    caaccttgtgttgtactcaa 107
             ||||||||||||||||||||
Sbjct: 66726 caaccttgtgttgtactcaa 66707



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>emb|AL161578.2|ATCHRIV74 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74
          Length = 194920

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    cttacaaaatcatccatttg 67
             ||||||||||||||||||||
Sbjct: 70961 cttacaaaatcatccatttg 70942



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>emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project)
          Length = 122322

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   cttacaaaatcatccatttg 67
            ||||||||||||||||||||
Sbjct: 7010 cttacaaaatcatccatttg 7029



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>gb|AF106582.1| Caenorhabditis elegans cosmid W05F2, complete sequence
          Length = 34852

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    attttcttacaaaatcatccattt 66
             ||||||||||||||| ||||||||
Sbjct: 25734 attttcttacaaaattatccattt 25711



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>gb|AC008087.11| Homo sapiens chromosome 17, clone RP5-1127L24, complete sequence
          Length = 104726

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    gatggattttcttacaaaat 57
             ||||||||||||||||||||
Sbjct: 86212 gatggattttcttacaaaat 86193



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>gb|AF258545.2| Homo sapiens chromosome 17 clone PAC P579 HC90, HC71AC, HC6 and HC56
             genes, complete sequence
          Length = 116004

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    gatggattttcttacaaaat 57
             ||||||||||||||||||||
Sbjct: 74113 gatggattttcttacaaaat 74132



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>gb|AF258547.1|AF258547 Homo sapiens chromosome 17 unknown sequence
          Length = 52586

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    gatggattttcttacaaaat 57
             ||||||||||||||||||||
Sbjct: 10695 gatggattttcttacaaaat 10714



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>gb|AC027455.22| Homo sapiens chromosome 17, clone RP11-411G7, complete sequence
          Length = 145410

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     gatggattttcttacaaaat 57
              ||||||||||||||||||||
Sbjct: 132766 gatggattttcttacaaaat 132747



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>emb|BX248135.5| Zebrafish DNA sequence from clone CH211-106J4 in linkage group 17,
             complete sequence
          Length = 152463

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    attttcttacaaaatcatcc 62
             ||||||||||||||||||||
Sbjct: 63004 attttcttacaaaatcatcc 63023


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,890,324
Number of Sequences: 3902068
Number of extensions: 1890324
Number of successful extensions: 161561
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 161423
Number of HSP's gapped (non-prelim): 138
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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