ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.2... 46 2e-05
2GNMT_HUMAN (Q14749) Glycine N-methyltransferase (EC 2.1.1.20) 29 3.9
3ATR_ORYSA (Q5Z987) Serine/threonine-protein kinase ATR (EC 2.7.1... 28 6.7
4CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro... 28 6.7

>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA|
           N-glycosidase)
          Length = 560

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = -2

Query: 191 VGVNDAEFEVTILWSEYPW 135
           VGVNDAEFEVTILWSEYPW
Sbjct: 542 VGVNDAEFEVTILWSEYPW 560



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>GNMT_HUMAN (Q14749) Glycine N-methyltransferase (EC 2.1.1.20)|
          Length = 294

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   PLFITNILENTNWYVSRKDTYFSTRTEFHIVFVVDSSPLAHMGVYQG-YSDHKIVTSNSA 177
           P F   ++E  NW    KD   S    F  V  + +S  AH+   +G  S+H++   N A
Sbjct: 105 PAFDKWVIEEANWMTLDKDVPQSAEGGFDAVICLGNS-FAHLPDCKGDQSEHRLALKNIA 163

Query: 178 SL 183
           S+
Sbjct: 164 SM 165



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>ATR_ORYSA (Q5Z987) Serine/threonine-protein kinase ATR (EC 2.7.11.1)|
          Length = 2710

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 189 WCQ*C*IRGDNLMVGVPLVDTHVSERTTINYKYYM 85
           WC  C +R  ++   VP+VD  +SE   I++K  M
Sbjct: 734 WCPQCDVRTVHIEDQVPIVDIALSEDKNIDFKINM 768



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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 151 GRSTLGRHPCERADYYQLQILYGTQYE 71
           GR ++G HP +  D Y+ +I YG   E
Sbjct: 269 GRGSMGEHPEDEEDLYEEEIEYGESEE 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,466,331
Number of Sequences: 219361
Number of extensions: 395187
Number of successful extensions: 1055
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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