ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54d09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 381 bits (192), Expect = e-103 Identities = 192/192 (100%) Strand = Plus / Minus Query: 1 cctttattcattacaaatatattagaaaatacaaattggtatgtgtcaaggaaagacact 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1866 cctttattcattacaaatatattagaaaatacaaattggtatgtgtcaaggaaagacact 1807 Query: 61 tatttttcaactcgtactgagttccatatagtatttgtagttgatagtagtccgctcgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1806 tatttttcaactcgtactgagttccatatagtatttgtagttgatagtagtccgctcgct 1747 Query: 121 cacatgggtgtctaccaagggtactccgaccataagattgtcacctcgaattcagcatca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1746 cacatgggtgtctaccaagggtactccgaccataagattgtcacctcgaattcagcatca 1687 Query: 181 ttgacaccaaca 192 |||||||||||| Sbjct: 1686 ttgacaccaaca 1675
>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence Length = 253001 Score = 46.1 bits (23), Expect = 0.039 Identities = 23/23 (100%) Strand = Plus / Minus Query: 3 tttattcattacaaatatattag 25 ||||||||||||||||||||||| Sbjct: 102781 tttattcattacaaatatattag 102759
>gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence Length = 253924 Score = 44.1 bits (22), Expect = 0.15 Identities = 25/26 (96%) Strand = Plus / Plus Query: 12 tacaaatatattagaaaatacaaatt 37 |||||||||||||||||||| ||||| Sbjct: 237232 tacaaatatattagaaaataaaaatt 237257
>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete sequence Length = 196646 Score = 42.1 bits (21), Expect = 0.61 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 attcattacaaatatattagaaaat 30 |||| |||||||||||||||||||| Sbjct: 185977 attctttacaaatatattagaaaat 186001
>gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, complete sequence Length = 185702 Score = 42.1 bits (21), Expect = 0.61 Identities = 24/25 (96%) Strand = Plus / Minus Query: 6 attcattacaaatatattagaaaat 30 |||| |||||||||||||||||||| Sbjct: 164886 attctttacaaatatattagaaaat 164862
>emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, complete sequence Length = 270722 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 aatatattagaaaatacaaat 36 ||||||||||||||||||||| Sbjct: 67333 aatatattagaaaatacaaat 67313
>emb|CR407559.8| Zebrafish DNA sequence from clone CH211-283G2 in linkage group 5, complete sequence Length = 149707 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 ggtatgtgtcaaggaaagaca 58 ||||||||||||||||||||| Sbjct: 27383 ggtatgtgtcaaggaaagaca 27363
>emb|AL513468.9| Mouse DNA sequence from clone RP23-104I6 on chromosome X, complete sequence Length = 211194 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 aaatatattagaaaatacaaa 35 ||||||||||||||||||||| Sbjct: 159697 aaatatattagaaaatacaaa 159677
>ref|XM_631318.1| Dictyostelium discoideum ADP-ribosylation factor-like protein (DDB0229377), partial mRNA Length = 588 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tatttgtagttgatagtagt 111 |||||||||||||||||||| Sbjct: 203 tatttgtagttgatagtagt 222
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 attacaaatatattagaaaa 29 |||||||||||||||||||| Sbjct: 3276173 attacaaatatattagaaaa 3276154
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 attacaaatatattagaaaa 29 |||||||||||||||||||| Sbjct: 3276739 attacaaatatattagaaaa 3276720
>gb|AC006456.3| Homo sapiens PAC clone RP5-969D4 from 7, complete sequence Length = 75609 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttcattacaaatatattaga 26 |||||||||||||||||||| Sbjct: 40786 ttcattacaaatatattaga 40767
>gb|AC023600.19| Homo sapiens 3 BAC RP11-754J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185326 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ttattcattacaaatatatt 23 |||||||||||||||||||| Sbjct: 144526 ttattcattacaaatatatt 144507
>gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178905 Score = 40.1 bits (20), Expect = 2.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 26 aaaatacaaattggtatgtgtcaaggaa 53 |||||| |||| |||||||||||||||| Sbjct: 35506 aaaataaaaataggtatgtgtcaaggaa 35533
>ref|XM_719182.1| Plasmodium yoelii yoelii str. 17XNL nonclathrin coat protein zeta1-COP (PY04027) partial mRNA Length = 642 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tacaaatatattagaaaata 31 |||||||||||||||||||| Sbjct: 81 tacaaatatattagaaaata 100
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 attacaaatatattagaaaa 29 |||||||||||||||||||| Sbjct: 3347373 attacaaatatattagaaaa 3347354
>emb|Y12461.1|HAPHAMLY Helianthus annuus mRNA for phenylalanine ammonia lyase Length = 2322 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aaatatattagaaaatacaa 34 |||||||||||||||||||| Sbjct: 2297 aaatatattagaaaatacaa 2278
>gb|AC110597.7| Homo sapiens chromosome 18, clone CTD-2541J13, complete sequence Length = 180310 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 attacaaatatattagaaaa 29 |||||||||||||||||||| Sbjct: 63211 attacaaatatattagaaaa 63230
>emb|AL645800.5| Zebrafish DNA sequence from clone XX-184L24 Contains three novel genes and the spi1 gene for transcription factor spi1, complete sequence Length = 98204 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 atatattagaaaatacaaat 36 |||||||||||||||||||| Sbjct: 31343 atatattagaaaatacaaat 31362
>gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, complete sequence Length = 175627 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tatattagaaaatacaaatt 37 |||||||||||||||||||| Sbjct: 59078 tatattagaaaatacaaatt 59059
>gb|AC025254.14| Homo sapiens 12 BAC RP11-1041F24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160867 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aatatattagaaaatacaaa 35 |||||||||||||||||||| Sbjct: 90262 aatatattagaaaatacaaa 90281
>gb|AC016637.7| Homo sapiens chromosome 5 clone RP11-34J15, complete sequence Length = 173317 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 cattacaaatatattagaaa 28 |||||||||||||||||||| Sbjct: 35499 cattacaaatatattagaaa 35518
>emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in linkage group 1, complete sequence Length = 165355 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 acaaatatattagaaaatac 32 |||||||||||||||||||| Sbjct: 25068 acaaatatattagaaaatac 25049
>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence Length = 1251 Score = 40.1 bits (20), Expect = 2.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 133 taccaagggtactccgaccataagattgtcacctcgaattcagc 176 ||||||||||||| ||||||| | |||| ||| || |||||||| Sbjct: 169 taccaagggtactgcgaccatgaaattgccacttccaattcagc 212
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 attacaaatatattagaaaa 29 |||||||||||||||||||| Sbjct: 3276046 attacaaatatattagaaaa 3276027
>emb|AL954855.8| Mouse DNA sequence from clone RP23-211L10 on chromosome X, complete sequence Length = 87910 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 agaaaatacaaattggtatg 43 |||||||||||||||||||| Sbjct: 35463 agaaaatacaaattggtatg 35482
>ref|XM_418391.1| PREDICTED: Gallus gallus similar to CUB and Sushi multiple domains 3 isoform 1 (LOC420279), mRNA Length = 11283 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 aaaatacaaattggtatgt 44 ||||||||||||||||||| Sbjct: 2246 aaaatacaaattggtatgt 2228
>gb|AC118227.12| Mus musculus chromosome 15, clone RP23-379H6, complete sequence Length = 200663 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tgtgtcaaggaaagacact 60 ||||||||||||||||||| Sbjct: 189029 tgtgtcaaggaaagacact 189047
>gb|AC009022.10| Homo sapiens chromosome 16 clone RP11-106J23, complete sequence Length = 190577 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 128398 aaatatattagaaaataca 128416
>gb|AC110919.10| Mus musculus chromosome 15, clone RP23-216B8, complete sequence Length = 228930 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 204520 aaatatattagaaaataca 204502
>gb|AC113595.11| Mus musculus chromosome 15, clone RP23-373B5, complete sequence Length = 235814 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tgtgtcaaggaaagacact 60 ||||||||||||||||||| Sbjct: 15712 tgtgtcaaggaaagacact 15730
>gb|AC130801.16| Medicago truncatula clone mth2-12p19, complete sequence Length = 119328 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 attcattacaaatatatta 24 ||||||||||||||||||| Sbjct: 84320 attcattacaaatatatta 84338
>emb|AL390059.10| Human DNA sequence from clone RP11-399E10 on chromosome 4, complete sequence Length = 200379 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 agaaaatacaaattggtat 42 ||||||||||||||||||| Sbjct: 59797 agaaaatacaaattggtat 59815
>emb|AL591602.7| Human DNA sequence from clone RP5-1092E23 on chromosome 1 Contains part of the gene for a novel protein and a zinc finger protein pseudogene, complete sequence Length = 149988 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 atatattagaaaatacaaa 35 ||||||||||||||||||| Sbjct: 97792 atatattagaaaatacaaa 97774
>emb|AL606467.5| Human DNA sequence from clone RP13-172P16 on chromosome Xp21.1-21.3 Contains a High mobility group protein 1 (HMG-1)(LOC340573) pseudogene, a novel gene and the 5'end of a novel gene (LOC158730), complete sequence Length = 138093 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 ttattcattacaaatatat 22 ||||||||||||||||||| Sbjct: 30345 ttattcattacaaatatat 30363
>emb|AL392110.12| Human DNA sequence from clone RP11-29M23 on chromosome 9, complete sequence Length = 167921 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 atatattagaaaatacaaa 35 ||||||||||||||||||| Sbjct: 83031 atatattagaaaatacaaa 83049
>emb|AL359382.23| Human DNA sequence from clone RP11-631F7 on chromosome 6 Contains the 3' part of a novel gene, a novel gene and a CpG island, complete sequence Length = 183935 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 gacacttatttttcaactc 73 ||||||||||||||||||| Sbjct: 175840 gacacttatttttcaactc 175822
>emb|AL157367.15| Human DNA sequence from clone RP11-480P3 on chromosome 13, complete sequence Length = 85778 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 tcaaggaaagacacttatttttc 68 ||||| ||||||||||||||||| Sbjct: 50665 tcaagaaaagacacttatttttc 50643
>emb|AL121880.21|HSJ1174H9 Human DNA sequence from clone RP5-1174H9 on chromosome X, complete sequence Length = 87065 Score = 38.2 bits (19), Expect = 9.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 5 tattcattacaaatatattagaaaata 31 |||| |||||||||| ||||||||||| Sbjct: 62609 tatttattacaaataaattagaaaata 62635
>emb|AL117378.15|HSJ131F15 Human DNA sequence from clone RP1-131F15 on chromosome 6q22.33-23.3 Contains the 5' end of a novel gene, the 3' end of the ENPP1 gene for ectonucleotide pyrophosphatase/phosphodiesterase 1 and a T-cell activation leucine repeat-rich protein (TA-LRRP) pseudogene, complete sequence Length = 90890 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 160 gtcacctcgaattcagcat 178 ||||||||||||||||||| Sbjct: 88419 gtcacctcgaattcagcat 88437
>gb|AC139256.5| Homo sapiens chromosome 16 clone RP11-1186N24, complete sequence Length = 143783 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 128653 aaatatattagaaaataca 128635
>emb|X66484.1|CRMITOLA C.reinhardtii linear 15.8kb mitochondrial genome (left arm): NADH-Q1 complex genes nad2, nad4, nad5 and nad6 for NADH dehydrogenase subunits, cytb gene for apocytochrome b and coxI for cytochrome-c oxidase Length = 7968 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 actcgtactgagttccata 88 ||||||||||||||||||| Sbjct: 1787 actcgtactgagttccata 1769
>emb|BX569779.35| Zebrafish DNA sequence from clone CH211-113I9 in linkage group 11, complete sequence Length = 182464 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 121773 aaatatattagaaaataca 121791
>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4, complete sequence Length = 150030 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 tattcattacaaatatatt 23 ||||||||||||||||||| Sbjct: 100916 tattcattacaaatatatt 100898
>emb|BX005005.19| Zebrafish DNA sequence from clone DKEY-70O15 in linkage group 13, complete sequence Length = 153184 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 atattagaaaatacaaatt 37 ||||||||||||||||||| Sbjct: 104722 atattagaaaatacaaatt 104740
>gb|AC004554.1| Homo sapiens X BAC GSHB-590J6 (Genome Systems Human BAC library) complete sequence Length = 195142 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 acaaatatattagaaaata 31 ||||||||||||||||||| Sbjct: 155306 acaaatatattagaaaata 155288
>gb|AC091778.13| Papio anubis clone rp41-280n2, complete sequence Length = 183807 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 tatgtgtcaaggaaagaca 58 ||||||||||||||||||| Sbjct: 155485 tatgtgtcaaggaaagaca 155503
>dbj|AK090552.1| Homo sapiens cDNA FLJ33233 fis, clone ASTRO2002035 Length = 2595 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 750 aaatatattagaaaataca 768
>gb|AC097268.10| Pan troglodytes BAC RP43-43O8 (Roswell Park Cancer Institute) complete sequence Length = 241278 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 184742 aaatatattagaaaataca 184724
>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC Library) complete sequence Length = 183586 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 26477 aaatatattagaaaataca 26495
>gb|AC105903.2| Homo sapiens chromosome 3 clone RP11-606H24, complete sequence Length = 186951 Score = 38.2 bits (19), Expect = 9.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 11 ttacaaatatattagaaaatacaaatt 37 ||||||||| | ||||||||||||||| Sbjct: 4733 ttacaaatagaatagaaaatacaaatt 4707
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 caaatatattagaaaatac 32 ||||||||||||||||||| Sbjct: 1107083 caaatatattagaaaatac 1107101
>gb|AC073613.16| Homo sapiens Xp BAC RP11-797I1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137432 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 acaaatatattagaaaata 31 ||||||||||||||||||| Sbjct: 136031 acaaatatattagaaaata 136049
>gb|AC010733.8| Homo sapiens BAC clone RP11-373L24 from 2, complete sequence Length = 209060 Score = 38.2 bits (19), Expect = 9.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 7 ttcattacaaatatattagaaaatacaaatt 37 ||||||||| | |||||| |||||||||||| Sbjct: 165491 ttcattacacacatattataaaatacaaatt 165521
>gb|AF440619.1|AF440619 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 1 of 2 Length = 350000 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 tcaaggaaagacacttatttttc 68 ||||| ||||||||||||||||| Sbjct: 262670 tcaagaaaagacacttatttttc 262648
>gb|U03843.1|CRU03843 Chlamydomonas reinhardtii complete mitochondrial genome Length = 15758 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 actcgtactgagttccata 88 ||||||||||||||||||| Sbjct: 1787 actcgtactgagttccata 1769
>gb|AF279660.2|AF279660 Homo sapiens CAR (RFP2) gene, complete cds; DLEU2 and DLEU1 genes, complete sequence; and RPL18 and p48/Hip pseudogenes, complete sequence Length = 347503 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 tcaaggaaagacacttatttttc 68 ||||| ||||||||||||||||| Sbjct: 214948 tcaagaaaagacacttatttttc 214926
>emb|BX546494.9| Zebrafish DNA sequence from clone DKEYP-118A3 in linkage group 1, complete sequence Length = 174501 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 atatattagaaaatacaaa 35 ||||||||||||||||||| Sbjct: 73338 atatattagaaaatacaaa 73320
>gb|AC160569.2| Pan troglodytes BAC clone CH251-279A4 from chromosome unknown, complete sequence Length = 147345 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 160 gtcacctcgaattcagcat 178 ||||||||||||||||||| Sbjct: 58393 gtcacctcgaattcagcat 58411
>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence Length = 161873 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 attacaaatatattagaaaatac 32 ||||||||||| ||||||||||| Sbjct: 149244 attacaaatattttagaaaatac 149266
>gb|AC079045.2| Homo sapiens chromosome 13 clone ctd-2302o19 map 13q14, complete sequence Length = 110620 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 tcaaggaaagacacttatttttc 68 ||||| ||||||||||||||||| Sbjct: 68403 tcaagaaaagacacttatttttc 68425
>gb|AC013358.32| Homo sapiens chromosome 13 clone 2252c9 map 13q14, complete sequence Length = 140312 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 tcaaggaaagacacttatttttc 68 ||||| ||||||||||||||||| Sbjct: 6435 tcaagaaaagacacttatttttc 6413
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 attacaaatatattagaaaatac 32 ||||||||||| ||||||||||| Sbjct: 6280659 attacaaatattttagaaaatac 6280637
>gb|AC138932.4| Homo sapiens chromosome 16 clone RP11-680G24, complete sequence Length = 180798 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 13194 aaatatattagaaaataca 13176
>gb|AF318076.1|AF318076 Mus musculus neuronal pentraxin receptor (Npr) gene, complete cds Length = 27065 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 tgtgtcaaggaaagacact 60 ||||||||||||||||||| Sbjct: 10223 tgtgtcaaggaaagacact 10205
>gb|AC079865.14| Homo sapiens 12 BAC RP11-745I6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163494 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 48 aaggaaagacacttatttttcaa 70 |||||||| |||||||||||||| Sbjct: 103257 aaggaaaggcacttatttttcaa 103279
>gb|AC136026.3| Homo sapiens chromosome 16 clone RP11-447K24, complete sequence Length = 184471 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 98431 aaatatattagaaaataca 98449
>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0663H05 Length = 161938 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 attacaaatatattagaaaatac 32 ||||||||||| ||||||||||| Sbjct: 12938 attacaaatattttagaaaatac 12916
>dbj|AP005562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1190_B07 Length = 140200 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 attacaaatatattagaaaatac 32 ||||||||||| ||||||||||| Sbjct: 125942 attacaaatattttagaaaatac 125920
>emb|AL845260.15| Mouse DNA sequence from clone RP23-232J15 on chromosome 2, complete sequence Length = 217328 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 acaaatatattagaaaata 31 ||||||||||||||||||| Sbjct: 83776 acaaatatattagaaaata 83794
>emb|CT485603.4| RP43-005L22, complete sequence Length = 204041 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 ttattcattacaaatatat 22 ||||||||||||||||||| Sbjct: 30607 ttattcattacaaatatat 30625
>emb|AL450169.1|CNS07EEW Genomic sequence at the putative B_CLL involved tumor suppressor gene locus on human chromosome 13q14.3 clone PAC 4E7,BAC 93D9,PAC 63H3 of library LLNL from chromosome 13 of Homo sapiens (human) Length = 279647 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 tcaaggaaagacacttatttttc 68 ||||| ||||||||||||||||| Sbjct: 100107 tcaagaaaagacacttatttttc 100085
>emb|CT573365.4| M.truncatula DNA sequence from clone MTH2-89E15 on chromosome 3, complete sequence Length = 123679 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 atatattagaaaatacaaattgg 39 ||||||||||||||||| ||||| Sbjct: 66364 atatattagaaaatacacattgg 66342
>dbj|AP001485.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-681H10, complete sequence Length = 158577 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 cctttattcattacaaata 19 ||||||||||||||||||| Sbjct: 129789 cctttattcattacaaata 129771
>dbj|AP003126.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684F2, complete sequence Length = 183583 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 tacaaatatattagaaaat 30 ||||||||||||||||||| Sbjct: 10374 tacaaatatattagaaaat 10356
>dbj|AP002987.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-428C14, complete sequence Length = 166893 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 tacaaatatattagaaaat 30 ||||||||||||||||||| Sbjct: 146967 tacaaatatattagaaaat 146949
>gb|AC102033.9| Mus musculus chromosome 15, clone RP23-86G8, complete sequence Length = 202269 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 aaatatattagaaaataca 33 ||||||||||||||||||| Sbjct: 11317 aaatatattagaaaataca 11299
>gb|AC110555.20| Mus musculus chromosome 3, clone RP23-250B22, complete sequence Length = 172885 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 attacaaatatattagaaa 28 ||||||||||||||||||| Sbjct: 150574 attacaaatatattagaaa 150592
>gb|AC157768.4| Mus musculus chromosome 1, clone RP24-308M3, complete sequence Length = 202770 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 ctttattcattacaaatat 20 ||||||||||||||||||| Sbjct: 72920 ctttattcattacaaatat 72938
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 ttacaaatatattagaaaataca 33 |||||||||||||| |||||||| Sbjct: 919121 ttacaaatatattaaaaaataca 919143
>dbj|AP001930.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-669L23, complete sequences Length = 167117 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 cctttattcattacaaata 19 ||||||||||||||||||| Sbjct: 825 cctttattcattacaaata 807
>gb|AC005516.1|AC005516 Homo sapiens Chromosome 4p16.3 BAC clone 399e10 containing Huntington's Disease gene; exons 1-67, complete sequence Length = 200348 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 agaaaatacaaattggtat 42 ||||||||||||||||||| Sbjct: 59767 agaaaatacaaattggtat 59785
>emb|Z49769.1|HSL27F12 Human DNA sequence from clone LA04NC01-27F12 on chromosome 4, complete sequence Length = 34195 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 agaaaatacaaattggtat 42 ||||||||||||||||||| Sbjct: 22852 agaaaatacaaattggtat 22870
>emb|AL928562.7| Mouse DNA sequence from clone RP23-288O19 on chromosome 2, complete sequence Length = 148856 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 atattagaaaatacaaatt 37 ||||||||||||||||||| Sbjct: 122574 atattagaaaatacaaatt 122592 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,074,596 Number of Sequences: 3902068 Number of extensions: 2074596 Number of successful extensions: 159306 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 158676 Number of HSP's gapped (non-prelim): 630 length of query: 192 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 170 effective length of database: 17,147,199,772 effective search space: 2915023961240 effective search space used: 2915023961240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
