ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54d03 |
|---|---|
| Clone Library Name | barley_pub |
>POL1_GCMV (P13025) RNA1 polyprotein (P1) [Contains: P1A protein (1A)| (Protease cofactor); Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (1B) (Membrane-binding protein); Viral genome-linked protein (1C-VPg); Picornain 3C-like pr Length = 2252 Score = 31.6 bits (70), Expect = 0.81 Identities = 16/68 (23%), Positives = 39/68 (57%) Frame = -2 Query: 296 KNVVEVYYSHYLGQLCVSLLDSAQILVIMYIQSDLLDYIYVADLVV*LFPLELKLVWMQS 117 +NV + ++S Y+GQ + + D + I ++ +L++ + D + + + K ++ +S Sbjct: 793 RNVKDSFFSGYMGQTIMEIDDLSSIKTDPPMEGELINLVSCKDYPLNMADVADKPIYFKS 852 Query: 116 KFVSTSSD 93 +FV +SS+ Sbjct: 853 QFVISSSN 860
>IP22_CAPAN (O49146) Wound-induced proteinase inhibitor 2 precursor| (Wound-induced proteinase inhibitor II) Length = 204 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/55 (30%), Positives = 21/55 (38%) Frame = +1 Query: 19 CHPRLVYSDCPAKAQEAEWTKRTHPSEDVDTNLLCIQTSFNSKGNNYTTRSATYI 183 C PR+ YS CP AE N +C KG NY + T+I Sbjct: 75 CDPRIFYSKCPRSEGNAE-------------NRICTNCCAGRKGCNYYSADGTFI 116
>SYI_STAAW (Q8NX29) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 156 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 284 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAS (Q6GA19) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 156 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 284 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAR (Q6GHP2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 156 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 284 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAN (P67509) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 156 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 284 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAM (P67508) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 156 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 284 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAC (Q5HGN8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 156 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 284 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI1_STAAU (P41972) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 156 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 284 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>VGLG_BRSVA (P62648) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 29.6 bits (65), Expect = 3.1 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 11/81 (13%) Frame = +2 Query: 77 PNEHTHRK--TSTQTYSASKP--VLTLKGTTI-----RRDQQHIYSQADHFVCTLLPRSG 229 P EH H+ TSTQ+ + S+P + T GTT R + I SQ+ LP + Sbjct: 91 PTEHNHKSTHTSTQSTTLSQPPNIDTTSGTTYGHPINRTQNRKIKSQSTPLATRKLPINP 150 Query: 230 L--NPTARHTIVQDNASSILP 286 L NP H N S LP Sbjct: 151 LESNPPENHQ--DHNNSQTLP 169
>VGLG_BRSV2 (O10685) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 29.6 bits (65), Expect = 3.1 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 11/81 (13%) Frame = +2 Query: 77 PNEHTHRK--TSTQTYSASKP--VLTLKGTTI-----RRDQQHIYSQADHFVCTLLPRSG 229 P EH H+ TSTQ+ + S+P + T GTT R + I SQ+ LP + Sbjct: 91 PTEHNHKSTHTSTQSTTLSQPPNIDTTSGTTYGHPINRTQNRKIKSQSTPLATRKLPINP 150 Query: 230 L--NPTARHTIVQDNASSILP 286 L NP H N S LP Sbjct: 151 LESNPPENHQ--DHNNSQTLP 169
>YHP6_SCHPO (Q9USP7) Protein C902.06 in chromosome II| Length = 397 Score = 29.3 bits (64), Expect = 4.0 Identities = 23/76 (30%), Positives = 32/76 (42%) Frame = +2 Query: 80 NEHTHRKTSTQTYSASKPVLTLKGTTIRRDQQHIYSQADHFVCTLLPRSGLNPTARHTIV 259 NE +H T +S + K T +YS A HF R +P+ RH Sbjct: 304 NELSHHNVRTTLFSDDSRFHS-KIHTHSTPPSQMYSAASHF------RYRSDPSTRHVSN 356 Query: 260 QDNASSILPPRSSLRI 307 N SS+ P +SLR+ Sbjct: 357 STNKSSLHPSPTSLRV 372
>BCSC2_ACEXY (O82861) Cellulose synthase operon protein C precursor| Length = 1326 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 49 PAKAQEAEWTKRTHPSEDVDTNLLCIQTSFNSKGNNYTTRSA 174 P KA E + H +D+D +Q + NS N+ TR A Sbjct: 751 PGKALEIDLAVLRHNPQDLDARQAAVQAAVNSNHNSLATRLA 792
>SYI_STAS1 (Q49WX5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 916 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +3 Query: 156 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYFHHVL 296 +Y E+ N V+ Y+ Y +D+ I++RD+ + M+ V + V+ Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEERDSHKRRSMQTVLYQIVV 750
>BCSC1_ACEXY (P19450) Cellulose synthase operon protein C precursor| Length = 1319 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 49 PAKAQEAEWTKRTHPSEDVDTNLLCIQTSFNSKGNNYTTRSA 174 P KA E + H +D+D +Q + NS N+ TR A Sbjct: 751 PGKALEIDLAVLRHNPQDLDARQAAVQAAVNSDHNSLATRLA 792
>NFAT5_MOUSE (Q9WV30) Nuclear factor of activated T-cells 5 (T cell transcription| factor NFAT5) (NF-AT5) (Rel domain-containing transcription factor NFAT5) Length = 1225 Score = 28.5 bits (62), Expect = 6.9 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Frame = +2 Query: 71 NGPNEHTHRKTSTQTYSASKP--------VLTLKGTTIRRDQQHIYSQADHFVCTLLPRS 226 + PN H +TST + +P + L+G+++ +DQQ L +S Sbjct: 1091 HSPNPIVHSQTSTASSEQLQPSMFHSQNTIAVLQGSSVPQDQQS--------PNIFLSQS 1142 Query: 227 GLNPTARHTIVQDNASSILPPRSSLRITRMTPN 325 +N +T+ Q+ S ++S+ + T N Sbjct: 1143 SINNLQTNTVAQEEQISFFAAQNSISPLQSTSN 1175
>HMP_PSEAE (Q9I0H4) Flavohemoprotein (Hemoglobin-like protein)| (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) (NO oxygenase) (NOD) Length = 393 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +2 Query: 182 YSQADHFVCTLLPRSGLNPTARHTIVQDNASSILPPRSSLRITRMTPNRYIARV 343 + Q +HF C PR+G + A + ++ + LP L + P ++A+V Sbjct: 313 HEQVEHFFCYSEPRAGDSADAEGLLSREKLADWLPQERDLDAYFLGPRPFMAQV 366
>LAG12_ARATH (Q9LJK3) LAG1 longevity assurance homolog 2 (LAG1 homolog 2)| Length = 296 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/49 (22%), Positives = 24/49 (48%) Frame = -1 Query: 390 WPDWEVHVFSTIYMWCTRAIYLFGVILVILSEERGGSILLALSWTIVCL 244 WP+ E+ + +Y C Y++GV ++ E R + +S ++ + Sbjct: 110 WPNQELKLSIKLYYMCQCGFYVYGVAALLAWETRRKDFAVMMSHHVITI 158
>SRD3_CAEEL (O17240) Serpentine receptor class delta-3 (Protein srd-3)| Length = 344 Score = 28.1 bits (61), Expect = 9.0 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -2 Query: 350 CGAHEQYICLVSFW*FSVKNVVEVYYSHYLGQLCVSLLDSAQILVIMYIQSDLLDYIYVA 171 C AH Q+I ++SF +Y + L Q+ + +I ++ Y+ S L +Y + Sbjct: 110 CLAHSQWILMISF----------LYRYYILDQISPDTVKIVRICILTYLPSLLFVIVYWS 159 Query: 170 DL 165 D+ Sbjct: 160 DV 161
>CBIO5_METAC (Q8TQW9) Putative cobalt import ATP-binding protein cbiO 5| Length = 528 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -2 Query: 242 LLDSAQILVIMYIQSDLLDYIYVADLVV*LFPLELKLVWMQSKFVSTSSD 93 L D+ + ++I I ++ D++ + D VV L E+K + S+F S SSD Sbjct: 188 LKDAGKTIII--IDHNIEDFLEIGDRVVLLEKGEIKAIKSPSEFTSKSSD 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,483,382 Number of Sequences: 219361 Number of extensions: 1340197 Number of successful extensions: 3231 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3172 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3231 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
