ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL110485.5|CEY46G5A Caenorhabditis elegans YAC Y46G5A, compl... 42 1.4
2gb|AF102268.1|AF102268 Pacifastacus leniusculus clotting protein... 42 1.4
3emb|BX546481.7| Zebrafish DNA sequence from clone DKEY-60J4 in l... 40 5.7
4emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 40 5.7
5emb|AL663065.9| Mouse DNA sequence from clone RP23-248G11 on chr... 40 5.7
6gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone c... 40 5.7
7gb|AC097014.2| Homo sapiens chromosome 3 clone RP11-29M1, comple... 40 5.7
8emb|AL929195.14| Zebrafish DNA sequence from clone CH211-149K12 ... 40 5.7
9ref|XM_393701.2| PREDICTED: Apis mellifera hypothetical LOC41021... 40 5.7
10gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome... 40 5.7
11gb|AC025572.13|AC025572 Homo sapiens 3 BAC RP11-58O15 (Roswell P... 40 5.7
12dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.7

>emb|AL110485.5|CEY46G5A Caenorhabditis elegans YAC Y46G5A, complete sequence
          Length = 197908

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    tttgtatgtacattattacca 220
              |||||||||||||||||||||
Sbjct: 143357 tttgtatgtacattattacca 143377



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>gb|AF102268.1|AF102268 Pacifastacus leniusculus clotting protein precursor, mRNA, complete
            cds
          Length = 6396

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 292  ttcttcactgagaatcaccagaatg 316
            |||||||||||||||| ||||||||
Sbjct: 2804 ttcttcactgagaatcgccagaatg 2780



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>emb|BX546481.7| Zebrafish DNA sequence from clone DKEY-60J4 in linkage group 17,
             complete sequence
          Length = 103902

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aaggctcaagaggctgaatg 74
             ||||||||||||||||||||
Sbjct: 86928 aaggctcaagaggctgaatg 86947



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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
              hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 165    gagatcagcaacatatatatagtc 188
              ||||||||||| ||||||||||||
Sbjct: 543031 gagatcagcaatatatatatagtc 543054



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>emb|AL663065.9| Mouse DNA sequence from clone RP23-248G11 on chromosome 11 Contains a
              heterogeneous nuclear ribonucleoprotein pseudogene and a
              CpG island, complete sequence
          Length = 210386

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    ttactctgcatccaaaccag 134
              ||||||||||||||||||||
Sbjct: 172129 ttactctgcatccaaaccag 172110



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>gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone ct7-326n13, complete
              sequence
          Length = 195413

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    ttactctgcatccaaaccag 134
              ||||||||||||||||||||
Sbjct: 122705 ttactctgcatccaaaccag 122724



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>gb|AC097014.2| Homo sapiens chromosome 3 clone RP11-29M1, complete sequence
          Length = 143671

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    atctgggctgaatccaacag 242
              ||||||||||||||||||||
Sbjct: 118917 atctgggctgaatccaacag 118898



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>emb|AL929195.14| Zebrafish DNA sequence from clone CH211-149K12 in linkage group 16,
              complete sequence
          Length = 139679

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     aaggctcaagaggctgaatg 74
              ||||||||||||||||||||
Sbjct: 111238 aaggctcaagaggctgaatg 111257



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>ref|XM_393701.2| PREDICTED: Apis mellifera hypothetical LOC410218 (LOC410218), mRNA
          Length = 852

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 ctgcatccaaaccagtttta 139
           ||||||||||||||||||||
Sbjct: 263 ctgcatccaaaccagtttta 282



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>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence
          Length = 204294

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   aaaacacatgcacttcccaa 382
             ||||||||||||||||||||
Sbjct: 50261 aaaacacatgcacttcccaa 50242



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>gb|AC025572.13|AC025572 Homo sapiens 3 BAC RP11-58O15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191510

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    atctgggctgaatccaacag 242
              ||||||||||||||||||||
Sbjct: 164390 atctgggctgaatccaacag 164371



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>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087,
              complete sequence
          Length = 124300

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 111    aaacttactctgcatccaaaccagtttt 138
              ||||||||| |||||| |||||||||||
Sbjct: 122710 aaacttactttgcatctaaaccagtttt 122683


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,733,831
Number of Sequences: 3902068
Number of extensions: 3733831
Number of successful extensions: 58180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58154
Number of HSP's gapped (non-prelim): 26
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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