ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT024007.1| Zea mays clone EL01N0403A09 mRNA sequence 42 0.72
2ref|XM_725353.1| Plasmodium yoelii yoelii str. 17XNL multidrug r... 40 2.8

>gb|BT024007.1| Zea mays clone EL01N0403A09 mRNA sequence
          Length = 1758

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 122 tcagcacataacttatacaaa 142
           |||||||||||||||||||||
Sbjct: 584 tcagcacataacttatacaaa 564



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>ref|XM_725353.1| Plasmodium yoelii yoelii str. 17XNL multidrug resistance protein
            (PY00245) partial mRNA
          Length = 4266

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 150  tgcaacatctatgaagaatt 169
            ||||||||||||||||||||
Sbjct: 3618 tgcaacatctatgaagaatt 3637


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,750,098
Number of Sequences: 3902068
Number of extensions: 1750098
Number of successful extensions: 113832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113830
Number of HSP's gapped (non-prelim): 2
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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