>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 187484

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    aacagcctctctctgtcatg 122
              ||||||||||||||||||||
Sbjct: 150455 aacagcctctctctgtcatg 150436

>gb|AC132290.3| Mus musculus BAC clone RP24-318H2 from chromosome 10, complete sequence
          Length = 152306

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acaagcaaagcaaaaccaca 54
              ||||||||||||||||||||
Sbjct: 133125 acaagcaaagcaaaaccaca 133106

>gb|AC122880.4| Mus musculus BAC clone RP23-77F18 from 8, complete sequence
          Length = 189549

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    acaagcaaagcaaaaccaca 54
             ||||||||||||||||||||
Sbjct: 93543 acaagcaaagcaaaaccaca 93524

>gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome 10, complete sequence
          Length = 255667

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acaagcaaagcaaaaccaca 54
              ||||||||||||||||||||
Sbjct: 103785 acaagcaaagcaaaaccaca 103766

>gb|AC005772.1|AC005772 Homo sapiens chromosome 17, clone hRPK.924_A_14, complete sequence
          Length = 175339

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     caaagcaaaaccacagcacc 59
              ||||||||||||||||||||
Sbjct: 118238 caaagcaaaaccacagcacc 118219

>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence
          Length = 198160

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  aacagcctctctctgtcatg 122
            ||||||||||||||||||||
Sbjct: 5152 aacagcctctctctgtcatg 5133

>ref|NM_006378.2| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin) 4D
            (SEMA4D), mRNA
          Length = 4675

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 49   accacagcaccctcaagca 67
            |||||||||||||||||||
Sbjct: 4302 accacagcaccctcaagca 4320

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 17      aggttttcagttccggaca 35
               |||||||||||||||||||
Sbjct: 1687113 aggttttcagttccggaca 1687131

>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10,
              complete sequence
          Length = 196999

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 102    gaacagcctctctctgtca 120
              |||||||||||||||||||
Sbjct: 186923 gaacagcctctctctgtca 186905

>gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome III BAC T17B22 genomic sequence,
             complete sequence
          Length = 96540

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    cacaagcaaagcaaaacca 52
             |||||||||||||||||||
Sbjct: 57623 cacaagcaaagcaaaacca 57605

>emb|AL929575.24| Human DNA sequence from clone XXyac-68G7 on chromosome 9 Contains the
             3' end of the  SECISBP2 gene for SECIS binding protein 2,
             the gene for a novel protein (LOC349236) and the 3' end of
             the SEMA4D gene for sema domain, immunoglobulin domain
             (Ig), transmembrane domain (TM) and short cytoplasmic
             domain, (semaphorin) 4D, complete sequence
          Length = 52064

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 49    accacagcaccctcaagca 67
             |||||||||||||||||||
Sbjct: 34237 accacagcaccctcaagca 34219

>gb|BC054500.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin)
            4D, mRNA (cDNA clone MGC:57659 IMAGE:5551182), complete
            cds
          Length = 4675

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 49   accacagcaccctcaagca 67
            |||||||||||||||||||
Sbjct: 4302 accacagcaccctcaagca 4320

>gb|AC091694.9| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-316F3, Complete
              Sequence, complete sequence
          Length = 213119

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 105    cagcctctctctgtcatgg 123
              |||||||||||||||||||
Sbjct: 163450 cagcctctctctgtcatgg 163468

>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete
             sequence
          Length = 178022

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 105   cagcctctctctgtcatgg 123
             |||||||||||||||||||
Sbjct: 33200 cagcctctctctgtcatgg 33218

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 105      cagcctctctctgtcatgg 123
                |||||||||||||||||||
Sbjct: 20770801 cagcctctctctgtcatgg 20770819

>dbj|AB210030.1| Homo sapiens mRNA for SEMA4D variant protein, partial cds, clone:
            hh05253
          Length = 5682

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 49   accacagcaccctcaagca 67
            |||||||||||||||||||
Sbjct: 4505 accacagcaccctcaagca 4523

>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 98412

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    ggacacaagcaaagcaaaa 49
             |||||||||||||||||||
Sbjct: 19108 ggacacaagcaaagcaaaa 19090

>emb|AL935290.10| Zebrafish DNA sequence from clone CH211-270H11, complete sequence
          Length = 129665

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   gaacagcctctctctgtca 120
             |||||||||||||||||||
Sbjct: 21593 gaacagcctctctctgtca 21611

>emb|BX648216.1|HSM808364 Homo sapiens mRNA; cDNA DKFZp686G03249 (from clone DKFZp686G03249)
          Length = 4284

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 49   accacagcaccctcaagca 67
            |||||||||||||||||||
Sbjct: 4094 accacagcaccctcaagca 4112

>gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, complete sequence
          Length = 148876

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     acacaagcaaagcaaaacc 51
              |||||||||||||||||||
Sbjct: 112942 acacaagcaaagcaaaacc 112960

>gb|U60800.1|HSU60800 Human semaphorin (CD100) mRNA, complete cds
          Length = 4157

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 49   accacagcaccctcaagca 67
            |||||||||||||||||||
Sbjct: 3817 accacagcaccctcaagca 3835

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 105      cagcctctctctgtcatgg 123
                |||||||||||||||||||
Sbjct: 20782065 cagcctctctctgtcatgg 20782083

>gb|AC138293.11| Mus musculus chromosome 18, clone RP23-33P24, complete sequence
          Length = 235495

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    acacaagcaaagcaaaacc 51
             |||||||||||||||||||
Sbjct: 24494 acacaagcaaagcaaaacc 24512

>emb|AL645542.13| Mouse DNA sequence from clone RP23-468A19 on chromosome 11, complete
             sequence
          Length = 166100

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   cagcctctctctgtcatgg 123
             |||||||||||||||||||
Sbjct: 66302 cagcctctctctgtcatgg 66284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,144,827
Number of Sequences: 3902068
Number of extensions: 1144827
Number of successful extensions: 84976
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84907
Number of HSP's gapped (non-prelim): 69
length of query: 125
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 104
effective length of database: 17,151,101,840
effective search space: 1783714591360
effective search space used: 1783714591360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)