ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54c11 |
|---|---|
| Clone Library Name | barley_pub |
>GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)| Length = 1258 Score = 33.1 bits (74), Expect = 0.28 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Frame = +1 Query: 178 RSCGYLPMKVDHLGITHHELYILLLKRSSHAQQTLVANPPSTNGTGHTR--ISNKI*A-- 345 +SC +P K HLG H QQT VA P+T G H + N A Sbjct: 940 QSCSNMPAKPGHLG---------------HPQQTEVAPDPTTMGNRHRELGVPNSALAGV 984 Query: 346 -PIDQLNNLPQKLHHL 390 P + + PQ+ HHL Sbjct: 985 PPPHPVQSYPQQSHHL 1000
>VCAP_PRVIS (Q00705) Major capsid protein (MCP) (MCP142)| Length = 1330 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +3 Query: 171 QHSKLWLPSDESRSPWHHPPRAIYFASKEILACSTNF 281 +H+ + P+ P HPPRA++F +K+ + C F Sbjct: 396 RHAGSFAPTPGLPDPRTHPPRAVHFFNKDGVPCHVTF 432
>ENV_SIVV1 (P27757) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 768 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = +1 Query: 70 RNSTRTGQPPGLCLYTVTIVCIVSSLCSSLHTVSNTRSCGYLPMKVDHLGIT 225 +N+ G+ PG C+ + C + S+ + +T+S Y P + HL T Sbjct: 426 KNNAGKGRSPGPCVQRTYVACHIRSVINDWYTISKKT---YAPPREGHLQCT 474
>GP158_HUMAN (Q5T848) Probable G-protein coupled receptor 158 precursor| Length = 1215 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 90 PAAWPVLVYGYNRLHRLQSLQLITHGVQHSKLWLPSDESR 209 P WP L + LHR +L +TH + L S++SR Sbjct: 109 PGKWPALASAHPSLHR--ALDTLTHATNFLNVMLQSNKSR 146
>ANC1_MOUSE (P53995) Anaphase-promoting complex subunit 1 (APC1) (Cyclosome| subunit 1) (Protein Tsg24) (Mitotic checkpoint regulator) Length = 1944 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = +1 Query: 127 VCIVSSLCSSLHTVSNTRSCGYLPMKVDHLGITHHELYILLLKRSSHAQQTLVANPPS 300 +CI+ S C ++H++ LP +V ++ T Y LL +R S + + PPS Sbjct: 151 ICILQSSCMNMHSIDGKDYIASLPFQVANVWATK---YGLLFERCSSSHEV----PPS 201
>SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1250 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 112 YTVTIVCIVSSLCSSLHTVSNTRSCG 189 +TV VC++SSLCS LH S G Sbjct: 146 WTVDPVCLLSSLCSHLHGDSTPSGAG 171
>GLUS_METJA (Q58746) Glutamate synthase (EC 1.4.1.13)| Length = 510 Score = 28.5 bits (62), Expect = 6.9 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -2 Query: 385 DAIFVEDC*VDRLGPRSCLRSSCDLCHWCLVD*RPKFVEHARISLEAKYIA 233 DA+++ + LG R C R LC W + RP+ V+ + A+ +A Sbjct: 408 DAVYIGTAAMVALGCRVCGRCYTGLCAWGIATQRPELVKRLDPEVGARRVA 458
>POLG_HRV16 (Q82122) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2152 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 126 RLHRLQSLQLITHGVQHSKLWLPSDESRSPWHHPPRAIYFA 248 +LH+++ + I H +H+K W P PPRA+ ++ Sbjct: 793 QLHKVKVVTRIYHKAKHTKAWCP---------RPPRAVQYS 824
>ANC1_HUMAN (Q9H1A4) Anaphase-promoting complex subunit 1 (APC1) (Cyclosome| subunit 1) (Protein Tsg24) (Mitotic checkpoint regulator) Length = 1944 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = +1 Query: 127 VCIVSSLCSSLHTVSNTRSCGYLPMKVDHLGITHHELYILLLKRSSHAQQTLVANP 294 +CI+ S C ++H++ LP +V ++ T Y LL +RS+ + + +P Sbjct: 151 ICILQSSCINMHSIEGKDYIASLPFQVANVWPTK---YGLLFERSASSHEVPPGSP 203
>KAX19_CENLM (P59848) Potassium channel toxin alpha-KTx 1.9 (Hongotoxin-2)| (HgTX2) (Fragment) Length = 36 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = -2 Query: 184 SFECWTPCVMSCKDWRRCRRL*PYTSTGQAAGLCVWSSCHC 62 S ECW PC +TG+AAG C+ C C Sbjct: 10 SKECWPPCK---------------AATGKAAGKCMNKKCKC 35
>GLGA_PROMP (Q7V275) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 483 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -2 Query: 202 SSEGSHSFECWTPCVMSCKDW 140 S+ S+ CW P V+ C DW Sbjct: 110 SATAEFSWNCWKPQVLHCHDW 130
>OR1D2_GORGO (Q9TU93) Olfactory receptor 1D2| Length = 312 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/63 (26%), Positives = 31/63 (49%) Frame = +1 Query: 85 TGQPPGLCLYTVTIVCIVSSLCSSLHTVSNTRSCGYLPMKVDHLGITHHELYILLLKRSS 264 T P LC+ +++ ++S L +HT+ TR K+ ++ E+Y+LL S Sbjct: 134 TAMSPKLCILLLSLCWVLSVLYGLIHTILMTRVTFCGSRKIHYI---FCEMYVLLRMACS 190 Query: 265 HAQ 273 + Q Sbjct: 191 NIQ 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,581,540 Number of Sequences: 219361 Number of extensions: 1391768 Number of successful extensions: 3825 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3722 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3824 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
