ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493849.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 4e-04
3gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 54 4e-04
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
5dbj|AK070093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
6dbj|AK060009.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
7dbj|AP004310.1| Synechocystis sp. PCC 6803 plasmid pSYSM DNA, co... 44 0.37
8gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
9gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
10emb|CR788308.9| Zebrafish DNA sequence from clone DKEY-192K19 in... 42 1.4
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
12gb|AC100798.4| Homo sapiens chromosome 8, clone RP11-600K15, com... 42 1.4
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
14gb|AC114554.8| Mus musculus chromosome 5, clone RP23-414E14, com... 40 5.7
15gb|AC166972.8| Mus musculus chromosome 3, clone RP24-330F18, com... 40 5.7
16gb|AC161226.7| Mus musculus chromosome 3, clone RP23-298B8, comp... 40 5.7
17gb|AC119825.11| Mus musculus chromosome 3, clone RP23-358O22, co... 40 5.7
18gb|AY769839.1| Renealmia battenbergiana 18S ribosomal RNA gene, ... 40 5.7
19gb|AY769838.1| Renealmia occidentalis 18S ribosomal RNA gene, pa... 40 5.7
20gb|AC141426.3| Mus musculus BAC clone RP23-280I14 from chromosom... 40 5.7
21gb|AC131707.3| Mus musculus BAC clone RP24-127O2 from chromosome... 40 5.7
22emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in l... 40 5.7
23gb|AY424741.1| Renealmia battenbergiana internal transcribed spa... 40 5.7
24gb|AC145941.2| Pan troglodytes BAC clone RP43-40O7 from 7, compl... 40 5.7
25gb|AC012061.4| Homo sapiens BAC clone CTD-2052D1 from 7, complet... 40 5.7
26emb|AL121845.20|HSJ583P15 Human DNA sequence from clone RP4-583P... 40 5.7
27gb|AF414476.1| Renealmia cernua 18S ribosomal RNA gene, partial ... 40 5.7
28gb|DQ126326.1| Renealmia pyramidalis 18S ribosomal RNA gene, par... 40 5.7
29gb|DQ122863.1| Renealmia alpinia 18S ribosomal RNA gene, partial... 40 5.7
30gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, com... 40 5.7
31emb|AL928725.18| Zebrafish DNA sequence from clone CH211-13O20 i... 40 5.7
32gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, compl... 40 5.7
33gb|AC008525.7|AC008525 Homo sapiens chromosome 5 clone CTC-467M3... 40 5.7
34gb|AC147288.4| Pan troglodytes BAC clone RP43-74L22 from chromos... 40 5.7
35gb|AC096623.31| Mus musculus strain 129/SvJ chromosome 3 clone m... 40 5.7
36emb|BX293562.5| Zebrafish DNA sequence from clone DKEYP-5F12 in ... 40 5.7
37gb|AF192708.1|RBATTITS2 Renealmia battenbergiana internal transc... 40 5.7
38gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, comple... 40 5.7
39gb|AC124354.4| Mus musculus BAC clone RP24-481K12 from 12, compl... 40 5.7
40gb|AC157952.2| Gallus gallus BAC clone CH261-57A7 from chromosom... 40 5.7
41gb|AC157664.2| Gallus gallus BAC clone CH261-174B17 from chromos... 40 5.7
42emb|AJ388307.1|RSP388307 Riedelia sp. Mood M75P204 5.8S rRNA gen... 40 5.7
43gb|AF478783.1| Renealmia thyrsoidea 18S ribosomal RNA gene, part... 40 5.7
44gb|AF478782.1| Renealmia sp. Harris RBGE 18S ribosomal RNA gene,... 40 5.7
45gb|AF478781.1| Renealmia sp. Kress 96-5713 18S ribosomal RNA gen... 40 5.7
46gb|AF478780.1| Renealmia cernua 18S ribosomal RNA gene, partial ... 40 5.7
47gb|AF478779.1| Renealmia battenbergiana 18S ribosomal RNA gene, ... 40 5.7 
>ref|XM_493849.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1487

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Minus

                                                                        
Query: 111  gtatacggttacaatcgtctgcatcgtctccagtctttgcagctcattacacacggtgtc 170
            |||||||||||||||| |||||||  | | |||| ||||||| ||||||||| | |||||
Sbjct: 1382 gtatacggttacaatcttctgcat--ttttcagt-tttgcagatcattacacccagtgtc 1326

                      
Query: 171  caacactcga 180
            ||||||||||
Sbjct: 1325 caacactcga 1316
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                           
Query: 111     gtatacggttacaatcgtctgcatcgtctccagtctttgcagctcattacacacggtgtc 170
               |||||||||||||||| |||||||  | | |||| ||||||| ||||||||| | |||||
Sbjct: 9705292 gtatacggttacaatcttctgcat--ttttcagt-tttgcagatcattacacccagtgtc 9705348

                         
Query: 171     caacactcga 180
               ||||||||||
Sbjct: 9705349 caacactcga 9705358
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>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
              sequence
          Length = 165113

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                          
Query: 111    gtatacggttacaatcgtctgcatcgtctccagtctttgcagctcattacacacggtgtc 170
              |||||||||||||||| |||||||  | | |||| ||||||| ||||||||| | |||||
Sbjct: 126191 gtatacggttacaatcttctgcat--ttttcagt-tttgcagatcattacacccagtgtc 126247

                        
Query: 171    caacactcga 180
              ||||||||||
Sbjct: 126248 caacactcga 126257
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                           
Query: 111     gtatacggttacaatcgtctgcatcgtctccagtctttgcagctcattacacacggtgtc 170
               |||||||||||||||| |||||||  | | |||| ||||||| ||||||||| | |||||
Sbjct: 9703413 gtatacggttacaatcttctgcat--ttttcagt-tttgcagatcattacacccagtgtc 9703469

                         
Query: 171     caacactcga 180
               ||||||||||
Sbjct: 9703470 caacactcga 9703479
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>dbj|AK070093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041M10, full
            insert sequence
          Length = 1607

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Minus

                                                                        
Query: 111  gtatacggttacaatcgtctgcatcgtctccagtctttgcagctcattacacacggtgtc 170
            |||||||||||||||| |||||||  | | |||| ||||||| ||||||||| | |||||
Sbjct: 1447 gtatacggttacaatcttctgcat--ttttcagt-tttgcagatcattacacccagtgtc 1391

                      
Query: 171  caacactcga 180
            ||||||||||
Sbjct: 1390 caacactcga 1381
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>dbj|AK060009.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D03, full
           insert sequence
          Length = 1037

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 61/70 (87%), Gaps = 3/70 (4%)
 Strand = Plus / Minus

                                                                       
Query: 111 gtatacggttacaatcgtctgcatcgtctccagtctttgcagctcattacacacggtgtc 170
           |||||||||||||||| |||||||  | | |||| ||||||| ||||||||| | |||||
Sbjct: 930 gtatacggttacaatcttctgcat--ttttcagt-tttgcagatcattacacccagtgtc 874

                     
Query: 171 caacactcga 180
           ||||||||||
Sbjct: 873 caacactcga 864
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>dbj|AP004310.1| Synechocystis sp. PCC 6803 plasmid pSYSM DNA, complete genome
          Length = 119895

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 367   cttccacaaaaattgcatcatc 388
             ||||||||||||||||||||||
Sbjct: 91979 cttccacaaaaattgcatcatc 91958
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0091I11, complete sequence
          Length = 135993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 379  ttgcatcatcttgaatggaatatcg 403
            |||||||||||||||| ||||||||
Sbjct: 1805 ttgcatcatcttgaatagaatatcg 1829
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>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084F23, complete sequence
          Length = 89829

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 379   ttgcatcatcttgaatggaatatcg 403
             |||||||||||||||| ||||||||
Sbjct: 15380 ttgcatcatcttgaatagaatatcg 15356
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>emb|CR788308.9| Zebrafish DNA sequence from clone DKEY-192K19 in linkage group 3,
              complete sequence
          Length = 193615

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 374    aaaaattgcatcatcttgaat 394
              |||||||||||||||||||||
Sbjct: 131315 aaaaattgcatcatcttgaat 131335
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 379     ttgcatcatcttgaatggaatatcg 403
               |||||||||||||||| ||||||||
Sbjct: 7542720 ttgcatcatcttgaatagaatatcg 7542744
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>gb|AC100798.4| Homo sapiens chromosome 8, clone RP11-600K15, complete sequence
          Length = 167799

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     aaacacattgaaagaataatt 27
             |||||||||||||||||||||
Sbjct: 61704 aaacacattgaaagaataatt 61724
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 379     ttgcatcatcttgaatggaatatcg 403
               |||||||||||||||| ||||||||
Sbjct: 7612806 ttgcatcatcttgaatagaatatcg 7612830
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>gb|AC114554.8| Mus musculus chromosome 5, clone RP23-414E14, complete sequence
          Length = 204467

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     aaaattacagtggcaggaac 75
              ||||||||||||||||||||
Sbjct: 163769 aaaattacagtggcaggaac 163788
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>gb|AC166972.8| Mus musculus chromosome 3, clone RP24-330F18, complete sequence
          Length = 142975

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    attgaaagaataattttgtg 32
             ||||||||||||||||||||
Sbjct: 50218 attgaaagaataattttgtg 50199
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>gb|AC161226.7| Mus musculus chromosome 3, clone RP23-298B8, complete sequence
          Length = 200107

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    attgaaagaataattttgtg 32
             ||||||||||||||||||||
Sbjct: 22671 attgaaagaataattttgtg 22652
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>gb|AC119825.11| Mus musculus chromosome 3, clone RP23-358O22, complete sequence
          Length = 205291

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aaacacattgaaagaataat 26
              ||||||||||||||||||||
Sbjct: 187735 aaacacattgaaagaataat 187716
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>gb|AY769839.1| Renealmia battenbergiana 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 683

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 348 atcgtcgcctttgctcctct 367
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>gb|AY769838.1| Renealmia occidentalis 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 567

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 348 atcgtcgcctttgctcctct 367
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>gb|AC141426.3| Mus musculus BAC clone RP23-280I14 from chromosome 12, complete sequence
          Length = 227835

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 354    tcaactcaacaatcttccacaaaa 377
              |||| |||||||||||||||||||
Sbjct: 191350 tcaattcaacaatcttccacaaaa 191327
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>gb|AC131707.3| Mus musculus BAC clone RP24-127O2 from chromosome 16, complete sequence
          Length = 174804

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     taaaattacagtggcaggaa 74
              ||||||||||||||||||||
Sbjct: 161037 taaaattacagtggcaggaa 161056
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>emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in linkage group 17,
             complete sequence
          Length = 224482

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    aagaataattttgtgctccc 37
             ||||||||||||||||||||
Sbjct: 84511 aagaataattttgtgctccc 84530
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>gb|AY424741.1| Renealmia battenbergiana internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 573

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 348 atcgtcgcctttgctcctct 367
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>gb|AC145941.2| Pan troglodytes BAC clone RP43-40O7 from 7, complete sequence
          Length = 172479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    cacattgaaagaataatttt 29
             ||||||||||||||||||||
Sbjct: 40863 cacattgaaagaataatttt 40844
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>gb|AC012061.4| Homo sapiens BAC clone CTD-2052D1 from 7, complete sequence
          Length = 81670

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    cacattgaaagaataatttt 29
             ||||||||||||||||||||
Sbjct: 52838 cacattgaaagaataatttt 52819
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>emb|AL121845.20|HSJ583P15 Human DNA sequence from clone RP4-583P15 on chromosome 20 Contains the
             3' end of the TNFRSF6B gene for member 6 (decoy) of tumor
             necrosis factor receptor, the ARFRP1 gene for
             ADP-ribosylation factor related protein 1, the gene for a
             novel protein (KIAA1847, FLJ14972), the gene for a novel
             protein (FLJ20406), the SLC2A4RG gene for SLC2A4 regulator
             (GEF),  the 3' end of the BTBD4 gene for BTB (POZ) domain
             containing 4, a novel gene and ten CpG islands, complete
             sequence
          Length = 120917

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cagtggcaggaactccacac 82
             ||||||||||||||||||||
Sbjct: 57044 cagtggcaggaactccacac 57063
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>gb|AF414476.1| Renealmia cernua 18S ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene and
           internal transcribed spacer 2, complete sequence; and
           26S ribosomal RNA gene, partial sequence
          Length = 694

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 399 atcgtcgcctttgctcctct 418
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>gb|DQ126326.1| Renealmia pyramidalis 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 625

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 365 atcgtcgcctttgctcctct 384
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>gb|DQ122863.1| Renealmia alpinia 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 708

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 364 atcgtcgcctttgctcctct 383
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>gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, complete sequence
          Length = 211621

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aaaattacagtggcaggaac 75
             ||||||||||||||||||||
Sbjct: 23901 aaaattacagtggcaggaac 23920
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>emb|AL928725.18| Zebrafish DNA sequence from clone CH211-13O20 in linkage group 23,
              complete sequence
          Length = 199910

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 353    atcaactcaacaatcttccacaaa 376
              ||||||||||||||||| ||||||
Sbjct: 192401 atcaactcaacaatctttcacaaa 192378
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>gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, complete sequence
          Length = 87338

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 atatattttgcttctaaaga 256
           ||||||||||||||||||||
Sbjct: 453 atatattttgcttctaaaga 472
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>gb|AC008525.7|AC008525 Homo sapiens chromosome 5 clone CTC-467M3, complete sequence
          Length = 123238

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   atatattttgcttctaaaga 256
             ||||||||||||||||||||
Sbjct: 54941 atatattttgcttctaaaga 54922
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>gb|AC147288.4| Pan troglodytes BAC clone RP43-74L22 from chromosome 7, complete
             sequence
          Length = 140079

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    cacattgaaagaataatttt 29
             ||||||||||||||||||||
Sbjct: 40879 cacattgaaagaataatttt 40860
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>gb|AC096623.31| Mus musculus strain 129/SvJ chromosome 3 clone mgs1-30a13, complete
              sequence
          Length = 196824

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aaacacattgaaagaataat 26
              ||||||||||||||||||||
Sbjct: 157997 aaacacattgaaagaataat 157978
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>emb|BX293562.5| Zebrafish DNA sequence from clone DKEYP-5F12 in linkage group 10,
             complete sequence
          Length = 183193

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     aacacattgaaagaataattttgt 31
             |||||||||||| |||||||||||
Sbjct: 23172 aacacattgaaataataattttgt 23149
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>gb|AF192708.1|RBATTITS2 Renealmia battenbergiana internal transcribed spacer 2, complete
           sequence
          Length = 216

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 1   atcgtcgcctttgctcctct 20
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>gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, complete sequence
          Length = 148858

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    taaaattacagtggcaggaa 74
             ||||||||||||||||||||
Sbjct: 61568 taaaattacagtggcaggaa 61549
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>gb|AC124354.4| Mus musculus BAC clone RP24-481K12 from 12, complete sequence
          Length = 180819

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    aaattacagtggcaggaact 76
             ||||||||||||||||||||
Sbjct: 96311 aaattacagtggcaggaact 96330
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>gb|AC157952.2| Gallus gallus BAC clone CH261-57A7 from chromosome unknown, complete
              sequence
          Length = 216788

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    gagctatatattttgcttct 251
              ||||||||||||||||||||
Sbjct: 102603 gagctatatattttgcttct 102622
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>gb|AC157664.2| Gallus gallus BAC clone CH261-174B17 from chromosome unknown, complete
             sequence
          Length = 214968

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   gagctatatattttgcttct 251
             ||||||||||||||||||||
Sbjct: 58632 gagctatatattttgcttct 58613
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>emb|AJ388307.1|RSP388307 Riedelia sp. Mood M75P204 5.8S rRNA gene and internal transcribed
           spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2)
          Length = 551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 337 atcgtcgcctttgctcctct 356
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>gb|AF478783.1| Renealmia thyrsoidea 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 377 atcgtcgcctttgctcctct 396
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>gb|AF478782.1| Renealmia sp. Harris RBGE 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 377 atcgtcgcctttgctcctct 396
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>gb|AF478781.1| Renealmia sp. Kress 96-5713 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene and internal transcribed spacer 2, complete
           sequence; and 26S ribosomal RNA gene, partial sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 377 atcgtcgcctttgctcctct 396
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>gb|AF478780.1| Renealmia cernua 18S ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene and
           internal transcribed spacer 2, complete sequence; and
           26S ribosomal RNA gene, partial sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 377 atcgtcgcctttgctcctct 396
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>gb|AF478779.1| Renealmia battenbergiana 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 atcgtcgcctttgctcctct 419
           ||||||||||||||||||||
Sbjct: 377 atcgtcgcctttgctcctct 396


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,839,771
Number of Sequences: 3902068
Number of extensions: 3839771
Number of successful extensions: 65713
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65557
Number of HSP's gapped (non-prelim): 156
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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