ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54c06 |
|---|---|
| Clone Library Name | barley_pub |
>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2| Length = 347 Score = 46.2 bits (108), Expect = 4e-05 Identities = 24/52 (46%), Positives = 31/52 (59%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAKRXXXXXXXXXXXATITAPRPCVLDFSGYGVVPTF 307 SRKAYAE RPR+KGRFAKR +T ++ +GYG+VP+F Sbjct: 302 SRKAYAEIRPRIKGRFAKRIETEAEAEEIFST------SLMSETGYGIVPSF 347
>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5| Length = 355 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/52 (48%), Positives = 28/52 (53%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAKRXXXXXXXXXXXATITAPRPCVLDFSGYGVVPTF 307 SRKAYAESRPR+KGRFAKR + + YGVVPTF Sbjct: 309 SRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAA-----HAQYGVVPTF 355
>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1| Length = 355 Score = 44.7 bits (104), Expect = 1e-04 Identities = 23/52 (44%), Positives = 31/52 (59%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAKRXXXXXXXXXXXATITAPRPCVLDFSGYGVVPTF 307 SRKAYAE RPR+KGRFAK+ +T+ + +GYG+VP+F Sbjct: 310 SRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTM------ITFDTGYGIVPSF 355
>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4| Length = 362 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/52 (48%), Positives = 28/52 (53%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAKRXXXXXXXXXXXATITAPRPCVLDFSGYGVVPTF 307 SRKAYAE RPR+KGRFAKR FSG+G+VPTF Sbjct: 319 SRKAYAEMRPRIKGRFAKRTDTNESNDVVGHGGI--------FSGFGLVPTF 362
>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3| Length = 294 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/52 (44%), Positives = 27/52 (51%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAKRXXXXXXXXXXXATITAPRPCVLDFSGYGVVPTF 307 SRKAYAE RPR+KGRFAKR + G+GVVP+F Sbjct: 253 SRKAYAEMRPRIKGRFAKRTDSRENDGGDVGV----------YGGFGVVPSF 294
>CONS_ARATH (Q39057) Zinc finger protein CONSTANS| Length = 373 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/52 (44%), Positives = 28/52 (53%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAKRXXXXXXXXXXXATITAPRPCVLDFSGYGVVPTF 307 SRKAYAE RPRV GRFAKR ++ +GYG+VP+F Sbjct: 330 SRKAYAEIRPRVNGRFAKREIEAEEQGF--------NTMLMYNTGYGIVPSF 373
>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7| Length = 392 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -2 Query: 459 RKAYAESRPRVKGRFAKR 406 RK AE RPR+KGRF KR Sbjct: 370 RKLNAEQRPRIKGRFVKR 387
>LIMK1_MOUSE (P53668) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (KIZ-1)| Length = 647 Score = 30.0 bits (66), Expect = 3.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 110 RMHVEQYTPLQPAISQLEKHYMQLYKR 190 RMH+ + PL P + QLE+ + + Y+R Sbjct: 608 RMHLSGHLPLGPQLEQLERGFWETYRR 634
>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16| Length = 417 Score = 30.0 bits (66), Expect = 3.0 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -2 Query: 459 RKAYAESRPRVKGRFAKR 406 RK AE RPR+KGRF KR Sbjct: 386 RKLNAEKRPRMKGRFVKR 403
>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6| Length = 406 Score = 30.0 bits (66), Expect = 3.0 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -2 Query: 459 RKAYAESRPRVKGRFAKR 406 RK AE RPR+KGRF KR Sbjct: 382 RKLNAEKRPRMKGRFVKR 399
>LIMK1_RAT (P53669) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1)| Length = 647 Score = 29.6 bits (65), Expect = 3.9 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 110 RMHVEQYTPLQPAISQLEKHYMQLYKR 190 RMH+ + PL P + QLE+ + + Y+R Sbjct: 608 RMHLAGHLPLGPQLEQLERGFWETYRR 634
>COL13_ARATH (O82256) Zinc finger protein CONSTANS-LIKE 13| Length = 332 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAK 409 SRK AESR R++GRFAK Sbjct: 311 SRKVRAESRTRIRGRFAK 328
>PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95| (Pseudo-response regulator 95) (OsPRR95) Length = 623 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAKR 406 SRK AE RPRVKG+F ++ Sbjct: 598 SRKLLAEQRPRVKGQFVRQ 616
>COL11_ARATH (O23379) Putative zinc finger protein CONSTANS-LIKE 11| Length = 330 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAK 409 SRKA A++R RVKGRF K Sbjct: 300 SRKARADTRKRVKGRFVK 317
>APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)| Length = 249 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 143 PAISQLEKHYMQLYKREHDACTSARSCRPCRAGLIRHAAGTFAGGSRT 286 P +S+ K ++ +R+ + ++C P L H+AGTF SRT Sbjct: 5 PTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRT 52
>COL12_ARATH (Q9LJ44) Putative zinc finger protein CONSTANS-LIKE 12| Length = 337 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAK 409 SRKA A++R RVKGRF K Sbjct: 304 SRKARADTRKRVKGRFVK 321
>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9| (Pseudo-response regulator 9) Length = 468 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAK 409 SRK AE RPRVKG+F + Sbjct: 441 SRKKLAEQRPRVKGQFVR 458
>LIMK1_HUMAN (P53667) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1)| Length = 647 Score = 28.5 bits (62), Expect = 8.7 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +2 Query: 110 RMHVEQYTPLQPAISQLEKHYMQLYKR 190 RMH+ + PL P + QL++ + + Y+R Sbjct: 608 RMHLAGHLPLGPQLEQLDRGFWETYRR 634
>APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5| (Pseudo-response regulator 5) Length = 558 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -2 Query: 462 SRKAYAESRPRVKGRFAKR 406 SRK AE RPR+KG+F ++ Sbjct: 533 SRKKLAEQRPRIKGQFVRQ 551 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,498,437 Number of Sequences: 219361 Number of extensions: 835195 Number of successful extensions: 2177 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2164 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
