ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart54c02 |
|---|---|
| Clone Library Name | barley_pub |
>PSMF1_ARATH (Q9M330) Probable proteasome inhibitor| Length = 302 Score = 57.4 bits (137), Expect = 2e-08 Identities = 25/42 (59%), Positives = 27/42 (64%) Frame = -3 Query: 325 RYDPIGPPDVPGFEPSRFVRRSRHPGGSTHPDLEFFQQGPDF 200 R+DP GPP VPGFEP RF R+ G HPDLE F G DF Sbjct: 260 RFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPGGSDF 301
>MYOZ3_HUMAN (Q8TDC0) Myozenin-3 (Calsarcin-3) (FATZ-related protein 3)| Length = 251 Score = 33.5 bits (75), Expect = 0.24 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +3 Query: 6 EDRSIYNCRGNRYKALSGR*TQKFTFMFPTSQ----AGSTATKFRSTAETKQSHSAQGAG 173 E+ S+ N RG+ R QKFTF SQ AGS K TAE+ +A G Sbjct: 39 EELSLRNNRGSLLFQKRQRRVQKFTFELAASQRAMLAGSARRKVTGTAESGTVANANGPE 98 Query: 174 GGWYEAE 194 G Y +E Sbjct: 99 GPNYRSE 105
>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining| factor) Length = 355 Score = 32.7 bits (73), Expect = 0.41 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +1 Query: 286 QILEHRAGQLDRNGHQVEHSQGHQKEQEKDLKGRSVDHLDRRAYYHPHHH 435 Q +H Q + HQ + Q H +Q+K + DH ++ +H HHH Sbjct: 169 QFHDHHQQQQQFHDHQQQQQQFHDHQQQKQ---QFHDHQQQQQQFHDHHH 215 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = +1 Query: 286 QILEHRAGQLDRNGHQVEHSQGHQKEQEKDLKGRSVDHLDRRAYYHPHHH 435 Q +H+ Q + HQ + Q H +Q++ + H ++ +H HHH Sbjct: 179 QFHDHQQQQQQFHDHQQQKQQFHDHQQQQQ-QFHDHHHQQQQQQFHDHHH 227
>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining| factor) Length = 395 Score = 32.3 bits (72), Expect = 0.53 Identities = 12/46 (26%), Positives = 24/46 (52%) Frame = +1 Query: 298 HRAGQLDRNGHQVEHSQGHQKEQEKDLKGRSVDHLDRRAYYHPHHH 435 H+ Q + Q + HQ++Q++ + + DH ++ +H HHH Sbjct: 209 HQEQQFHDHHQQQQQFHDHQQQQQQQQQQQFHDHHQQKQQFHDHHH 254 Score = 31.2 bits (69), Expect = 1.2 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +1 Query: 286 QILEHRAGQLDRNGHQVEHSQGHQKEQEKDLKGRSVDHLDRRAYYHPHHH 435 Q +H+ Q + HQ + Q H Q+K + DH ++ +H HHH Sbjct: 260 QFHDHQQQQQQFHDHQQQQHQFHDHPQQKQ---QFHDHPQQQQQFHDHHH 306 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Frame = +1 Query: 247 HLDASNALQSEMVQILEHRAGQLDRNGHQVEHSQGHQKEQEKD---LKGRSVDHLDRRAY 417 HL Q + H+ Q + HQ + Q Q++Q D K + DH ++ Sbjct: 142 HLQQQQQQQQQQQFHNHHQQQQQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQ 201 Query: 418 YHPHHH 435 +H HHH Sbjct: 202 FHDHHH 207
>DLGD_PASMU (Q9CLH5) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 31.2 bits (69), Expect = 1.2 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +3 Query: 150 SHSAQGAGGGWYEAEAQKSGPCWKNSRSG*VLPP 251 +H +G G GW AE G CW NS + V+PP Sbjct: 115 NHWMRGGGYGWQAAEKGYIGICWTNSIA--VMPP 146
>KNG1_HUMAN (P01042) Kininogen-1 precursor (Alpha-2-thiol proteinase inhibitor)| [Contains: Kininogen-1 heavy chain; Bradykinin (Kallidin I); Lysyl-bradykinin (Kallidin II); Kininogen-1 light chain; Low molecular weight growth-promoting factor] Length = 644 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%) Frame = +1 Query: 292 LEHRAGQLDRNGHQVEHSQGHQKEQEKDLK-----GRSVDHL 402 LEH+ G + +GH+ +H GH K + K K G +HL Sbjct: 483 LEHQGGHVLDHGHKHKHGHGHGKHKNKGKKNGKHNGWKTEHL 524
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = +1 Query: 295 EHRAGQLDRNGHQVEHSQGHQKEQEKDLKGRSVDHLD--RRAYYHPHHH 435 +H+ Q HQ + Q HQ++Q+ + + D L + HPH H Sbjct: 651 QHQHQQQQHQHHQQQQQQQHQQQQQHQQQQQQADMLQGLGQPQAHPHQH 699
>WC1_NEUCR (Q01371) White collar 1 protein (WC1)| Length = 1167 Score = 29.6 bits (65), Expect = 3.5 Identities = 11/42 (26%), Positives = 23/42 (54%) Frame = +1 Query: 247 HLDASNALQSEMVQILEHRAGQLDRNGHQVEHSQGHQKEQEK 372 HL ++ M ++ +H+ Q + HQ +H Q HQ++ ++ Sbjct: 1082 HLQGTHLNAQAMQRVHQHKQHQQHQQQHQQQHQQQHQQQHQQ 1123
>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) Length = 659 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +3 Query: 93 TSQAGSTATKFRSTAETKQSHSAQGAGGGWYEA--EAQKSGPCWKNSRS 233 +S + S+A++ S+ + +S S GGG+Y + A+ W SRS Sbjct: 364 SSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRS 412
>UL25_SHV21 (Q01004) Virion gene 19 protein| Length = 543 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +3 Query: 9 DRSIYNCRGNRYKALSGR*TQKFTFMFPTS-QAGSTATKFR 128 D+ N GNR++ + QKFTF P S A TA +F+ Sbjct: 453 DKPFINLTGNRFQDIFEIINQKFTFKDPVSLMAAQTALRFK 493
>BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1161 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = +1 Query: 319 RNGHQVEHSQGHQKEQEKDLKGRSVDHLDRRAYYHPHHH 435 R+ HQ + Q Q++Q++ + + ++ ++H HHH Sbjct: 456 RHPHQQQQQQQQQQQQQQQQQQQQQQQQQQQHHHHHHHH 494
>SSB_WOLSU (P59933) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 162 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +3 Query: 93 TSQAGSTATKFRSTAETKQSHSAQGAGGGWYEAEAQKS 206 T Q+G +K TAE+ Q ++GA G YE E S Sbjct: 85 TDQSGQKRSKHSVTAESLQMLDSKGASQGGYEGEDYSS 122
>RS19B_YEAST (P07281) 40S ribosomal protein S19-B (S16B) (YS16) (RP55)| Length = 143 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +1 Query: 145 SRVIQRRVQVEVGMKLRLRSLGLAGRTRGLGECFHLDASNALQSEMVQILE 297 +R I R QV VG +L L ++RG+ H+DAS ++ +++Q LE Sbjct: 61 ARHIYMRKQVGVG---KLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALE 108
>RS19A_YEAST (P07280) 40S ribosomal protein S19-A (S16A) (YS16) (RP55) (YP45)| Length = 143 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +1 Query: 145 SRVIQRRVQVEVGMKLRLRSLGLAGRTRGLGECFHLDASNALQSEMVQILE 297 +R I R QV VG +L L ++RG+ H+DAS ++ +++Q LE Sbjct: 61 ARHIYMRKQVGVG---KLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALE 108
>DLGD_SHIFL (Q83PQ6) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 150 SHSAQGAGGGWYEAEAQKSGPCWKNSRSG*VLPP 251 +H +G GW AE G CW NS + V+PP Sbjct: 115 NHWMRGGSYGWQAAEKGYIGICWTNSIA--VMPP 146
>DLGD_SALTY (Q8ZL83) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 150 SHSAQGAGGGWYEAEAQKSGPCWKNSRSG*VLPP 251 +H +G GW AE G CW NS + V+PP Sbjct: 115 NHWMRGGSYGWQAAEKGYIGICWTNSIA--VMPP 146
>DLGD_SALTI (Q8Z2C5) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 150 SHSAQGAGGGWYEAEAQKSGPCWKNSRSG*VLPP 251 +H +G GW AE G CW NS + V+PP Sbjct: 115 NHWMRGGSYGWQAAEKGYIGICWTNSIA--VMPP 146
>DLGD_SALPA (Q5PLN6) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 150 SHSAQGAGGGWYEAEAQKSGPCWKNSRSG*VLPP 251 +H +G GW AE G CW NS + V+PP Sbjct: 115 NHWMRGGSYGWQAAEKGYIGICWTNSIA--VMPP 146
>DLGD_ECOLI (P37672) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 150 SHSAQGAGGGWYEAEAQKSGPCWKNSRSG*VLPP 251 +H +G GW AE G CW NS + V+PP Sbjct: 115 NHWMRGGSYGWQAAEKGYIGICWTNSIA--VMPP 146
>DLGD_ECOL6 (Q8FCD6) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 150 SHSAQGAGGGWYEAEAQKSGPCWKNSRSG*VLPP 251 +H +G GW AE G CW NS + V+PP Sbjct: 115 NHWMRGGSYGWQAAEKGYIGICWTNSIA--VMPP 146
>VP12_RDVA (Q05054) Nonstructural protein Pns12A| Length = 312 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = +3 Query: 93 TSQAGSTATKFRSTAETKQSHSAQGAGG 176 TS A TAT R + E KQS S + AGG Sbjct: 120 TSDARHTATDSRLSQEVKQSFSEENAGG 147
>RS19_EMENI (P27073) 40S ribosomal protein S19 (S16)| Length = 148 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +1 Query: 145 SRVIQRRVQVEVGMKLRLRSLGLAGRTRGLGECFHLDASNALQSEMVQILEHRAGQLDRN 324 +R I R V VG RLR + + + RG H+DAS A+ +++Q LE + G L+++ Sbjct: 61 ARHIYLRKTVGVG---RLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSLE-KIGVLEQD 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,582,296 Number of Sequences: 219361 Number of extensions: 1069397 Number of successful extensions: 4602 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4234 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4557 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
