ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ000232.1|HVJ000232 Hordeum vulgare mRNA for expressed sequ... 587 e-164
2ref|NM_185747.1| Oryza sativa (japonica cultivar-group), mRNA 210 3e-51
3gb|AY106337.1| Zea mays PCO081460 mRNA sequence 155 1e-34
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
5dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
6gb|BT014256.1| Lycopersicon esculentum clone 133458F, mRNA sequence 46 0.097
7emb|AL928729.2| Human DNA sequence from clone RP11-162I21 on chr... 44 0.38
8emb|AL139238.13| Human DNA sequence from clone RP11-16O1 on chro... 44 0.38
9gb|AC093830.3| Homo sapiens BAC clone RP11-401G24 from 4, comple... 42 1.5
10gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 42 1.5
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
12gb|AC011994.10| Homo sapiens BAC clone RP11-50E1 from 2, complet... 42 1.5
13gb|AC116614.6| Homo sapiens BAC clone CTD-2029L3 from 2, complet... 42 1.5
14dbj|AP007231.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP006065.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17ref|NM_112459.1| Arabidopsis thaliana ATP binding / kinase/ prot... 40 6.0
18gb|AC147341.2| Pan troglodytes BAC clone CH251-31E16 from Y, com... 40 6.0
19ref|XM_543154.2| PREDICTED: Canis familiaris similar to Homeobox... 40 6.0
20emb|BX928750.9| Zebrafish DNA sequence from clone DKEY-162P13 in... 40 6.0
21gb|AC146484.3| Pan troglodytes BAC clone CH251-454A18 from Y, co... 40 6.0
22emb|AL512324.14| Human DNA sequence from clone RP11-432I13 on ch... 40 6.0
23emb|AL355589.8| Human DNA sequence from clone RP11-168F17 on chr... 40 6.0
24emb|AL035603.11|HS179E13 Human DNA sequence from clone RP1-179E1... 40 6.0
25gb|AY305858.1| Rattus norvegicus carbonyl reductase 4 (Cbr4) mRN... 40 6.0
26gb|BC086378.1| Rattus norvegicus carbonic reductase 4, mRNA (cDN... 40 6.0
27ref|NM_182672.1| Rattus norvegicus carbonic reductase 4 (Cbr4), ... 40 6.0
28dbj|BS000561.1| Pan troglodytes chromosome Y clone:PTB-495J17, c... 40 6.0
29dbj|BS000532.1| Pan troglodytes chromosome Y clone:PTB-056N15, c... 40 6.0
30gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.0
31gb|AC010229.7| Homo sapiens chromosome 5 clone CTC-312N19, compl... 40 6.0
32gb|AC008696.6|AC008696 Homo sapiens chromosome 5 clone CTB-70D19... 40 6.0
33emb|BX824680.1|CNS0A5HC Arabidopsis thaliana Full-length cDNA Co... 40 6.0
34gb|AC012068.5|AC012068 Homo sapiens BAC clone RP11-196J6 from Y,... 40 6.0
35gb|AY088361.1| Arabidopsis thaliana clone 6166 mRNA, complete se... 40 6.0
36dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
37dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
38gb|AC136188.2| Homo sapiens 12 BAC RP11-633L8 (Roswell Park Canc... 40 6.0
39gb|AC007014.1|AC007014 Homo sapiens chromosome 16 clone 66H6, co... 40 6.0
40emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, c... 40 6.0 
>emb|AJ000232.1|HVJ000232 Hordeum vulgare mRNA for expressed sequence tag
          Length = 300

 Score =  587 bits (296), Expect = e-164
 Identities = 299/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 94  cttcccaagcagggtctactgcaacaaagttcaggagcacagcagaaacaaagcagagtc 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cttcccaagcagggtctactgcaacaaagttcaggagcacagcagaaacaaagcagagtc 241

                                                                       
Query: 154 attcagcgcagggtgcaggtggaggttggtatgaagctgaggctcagaagtctgggcctt 213
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 240 attcagcgcagggtgcaggtggaggttggtatgaagctgagtctcagaagtctgggcctt 181

                                                                       
Query: 214 gctggaagaactcgaggtctgggtgagtgcttccacctggatgcctcgaacgccttacaa 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gctggaagaactcgaggtctgggtgagtgcttccacctggatgcctcgaacgccttacaa 121

                                                                       
Query: 274 agcgagatggttcaaatcctggaacatcgggcgggccaattggatcgtaacggccaccag 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agcgagatggttcaaatcctggaacatcgggcgggccaattggatcgtaacggccaccag 61

                                                                       
Query: 334 gtggaacactcccagggccaccaaaaggagcaggaaaaggatttgaagggaagaagcgtg 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gtggaacactcccagggccaccaaaaggagcaggaaaaggatttgaagggaagaagcgtg 1
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>ref|NM_185747.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 843

 Score =  210 bits (106), Expect = 3e-51
 Identities = 190/218 (87%)
 Strand = Plus / Minus

                                                                       
Query: 214 gctggaagaactcgaggtctgggtgagtgcttccacctggatgcctcgaacgccttacaa 273
           ||||||||||||| ||||||||||||||  | ||| ||||| |||||| |||||| ||||
Sbjct: 820 gctggaagaactcaaggtctgggtgagtagtcccagctggaggcctcggacgcctcacaa 761

                                                                       
Query: 274 agcgagatggttcaaatcctggaacatcgggcgggccaattggatcgtaacggccaccag 333
           ||||||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| |
Sbjct: 760 agcgagaaggttcaaatcctggaacatctggtggaccaattggatcataacgaccacctg 701

                                                                       
Query: 334 gtggaacactcccagggccaccaaaaggagcaggaaaaggatttgaagggaagaagcgtg 393
           ||||||||||||||||||||||||| ||  |||| || ||||| ||||| ||||||||||
Sbjct: 700 gtggaacactcccagggccaccaaagggcacagggaagggattagaaggaaagaagcgtg 641

                                                 
Query: 394 gatcatttggaccgacgtgcatactaccacccgcacca 431
           |||| |||||||| || ||||| || |||||| |||||
Sbjct: 640 gatcgtttggaccaacatgcatgctgccacccccacca 603
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>gb|AY106337.1| Zea mays PCO081460 mRNA sequence
          Length = 1287

 Score =  155 bits (78), Expect = 1e-34
 Identities = 194/232 (83%), Gaps = 3/232 (1%)
 Strand = Plus / Minus

                                                                        
Query: 196  ctcagaagtctgggccttgctggaagaactcgaggtctgggtgagtgcttccacctggat 255
            ||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||| 
Sbjct: 1053 ctcagaagtctgggccttgctggaagaactcgaggtcggggtgggtgctcccgcctggag 994

                                                                        
Query: 256  gcctc---gaacgccttacaaagcgagatggttcaaatcctggaacatcgggcgggccaa 312
            ||| |   | |||||| ||||||| |||||| ||||| ||||| || || || |||||||
Sbjct: 993  gccgccttggacgcctaacaaagctagatggctcaaaccctgggacgtcaggtgggccaa 934

                                                                        
Query: 313  ttggatcgtaacggccaccaggtggaacactcccagggccaccaaaaggagcaggaaaag 372
            ||||||| || || | ||| ||||||||||||||| | |||||||| || ||||  || |
Sbjct: 933  ttggatcatagcgactacctggtggaacactcccaagcccaccaaatggggcagagaagg 874

                                                                
Query: 373  gatttgaagggaagaagcgtggatcatttggaccgacgtgcatactaccacc 424
            |||| ||||| |||||||| |||||||| ||||| || ||||| || |||||
Sbjct: 873  gattagaaggaaagaagcgcggatcattaggaccaacatgcatgctgccacc 822
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                            
Query: 270      acaaagcgagatggttcaaatcctggaacatcgggcgggccaattggatcgtaacggcca 329
                ||||||||||| |||||||||||||||||||| || || ||||||||||| ||||| |||
Sbjct: 21735722 acaaagcgagaaggttcaaatcctggaacatctggtggaccaattggatcataacgacca 21735781

                                
Query: 330      ccaggtggaacactcc 345
                || |||||||||||||
Sbjct: 21735782 cctggtggaacactcc 21735797



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 344      cccagggccaccaaaaggagcaggaaaaggatttgaagggaagaagcgtggatcatttgg 403
                ||||||||||||||| ||  |||| || ||||| ||||| |||||||||||||| |||||
Sbjct: 21735884 cccagggccaccaaagggcacagggaagggattagaaggaaagaagcgtggatcgtttgg 21735943

                   
Query: 404      acc 406
                |||
Sbjct: 21735944 acc 21735946



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 214      gctggaagaactcgaggtctgggtgagtgcttccacctggatgcctcgaacgcct 268
                ||||||||||||| ||||||||||||||  | ||| ||||| |||||| ||||||
Sbjct: 21735306 gctggaagaactcaaggtctgggtgagtagtcccagctggaggcctcggacgcct 21735360
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>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534A03
          Length = 153170

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                         
Query: 270   acaaagcgagatggttcaaatcctggaacatcgggcgggccaattggatcgtaacggcca 329
             ||||||||||| |||||||||||||||||||| || || ||||||||||| ||||| |||
Sbjct: 52905 acaaagcgagaaggttcaaatcctggaacatctggtggaccaattggatcataacgacca 52964

                             
Query: 330   ccaggtggaacactcc 345
             || |||||||||||||
Sbjct: 52965 cctggtggaacactcc 52980



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 344   cccagggccaccaaaaggagcaggaaaaggatttgaagggaagaagcgtggatcatttgg 403
             ||||||||||||||| ||  |||| || ||||| ||||| |||||||||||||| |||||
Sbjct: 53067 cccagggccaccaaagggcacagggaagggattagaaggaaagaagcgtggatcgtttgg 53126

                
Query: 404   acc 406
             |||
Sbjct: 53127 acc 53129



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 214   gctggaagaactcgaggtctgggtgagtgcttccacctggatgcctcgaacgcct 268
             ||||||||||||| ||||||||||||||  | ||| ||||| |||||| ||||||
Sbjct: 52489 gctggaagaactcaaggtctgggtgagtagtcccagctggaggcctcggacgcct 52543
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>gb|BT014256.1| Lycopersicon esculentum clone 133458F, mRNA sequence
          Length = 1088

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                       
Query: 272 aaagcgagatggttcaaatcctggaacatcgggcgggccaattggatcgtaacggccacc 331
           |||||||  ||||||||| || |||||||| || || |||  ||||||  ||||| ||||
Sbjct: 861 aaagcgacctggttcaaagccaggaacatctggtggaccatatggatcaaaacgggcacc 802

                      
Query: 332 aggtggaacac 342
           |||||||||||
Sbjct: 801 aggtggaacac 791
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>emb|AL928729.2| Human DNA sequence from clone RP11-162I21 on chromosome 10 Contains a
             novel gene and the 5' end of the MRC1 gene for mannose
             receptor C type 1, complete sequence
          Length = 98910

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 190   ctgaggctcagaagtctgggccttgc 215
             ||||||||||||| ||||||||||||
Sbjct: 49288 ctgaggctcagaaatctgggccttgc 49313
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>emb|AL139238.13| Human DNA sequence from clone RP11-16O1 on chromosome 10 Contains a
             novel gene and the 5' end of the gene for a novel protein
             similar to mannose receptor C type 1 (MRC1), complete
             sequence
          Length = 106029

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 190   ctgaggctcagaagtctgggccttgc 215
             ||||||||||||| ||||||||||||
Sbjct: 51258 ctgaggctcagaaatctgggccttgc 51283
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>gb|AC093830.3| Homo sapiens BAC clone RP11-401G24 from 4, complete sequence
          Length = 153887

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    ttacaaagcattgtctggaag 61
             |||||||||||||||||||||
Sbjct: 27171 ttacaaagcattgtctggaag 27191
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>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
              sequence
          Length = 143507

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 372    ggatttgaagggaagaagcgtggatcatttgga 404
              ||||| ||||| ||||||| |||||||||||||
Sbjct: 114425 ggattagaaggaaagaagcttggatcatttgga 114393
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 372      ggatttgaagggaagaagcgtggatcatttgga 404
                ||||| ||||| ||||||| |||||||||||||
Sbjct: 30209992 ggattagaaggaaagaagcttggatcatttgga 30210024



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 372      ggatttgaagggaagaagcgtggatcatttgga 404
                ||||| ||||| ||||||| |||||||||||||
Sbjct: 30129822 ggattagaaggaaagaagcttggatcatttgga 30129854



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 372      ggatttgaagggaagaagcgtggatcatttgga 404
                ||||| ||||| ||||||| |||||||||||||
Sbjct: 30033728 ggattagaaggaaagaagcttggatcatttgga 30033696



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 87       ttcccaacttcccaagcagg 106
                ||||||||||||||||||||
Sbjct: 25884437 ttcccaacttcccaagcagg 25884418
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>gb|AC011994.10| Homo sapiens BAC clone RP11-50E1 from 2, complete sequence
          Length = 176933

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 374   atttgaagggaagaagcgtgg 394
             |||||||||||||||||||||
Sbjct: 22685 atttgaagggaagaagcgtgg 22705
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>gb|AC116614.6| Homo sapiens BAC clone CTD-2029L3 from 2, complete sequence
          Length = 129814

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 170   aggtggaggttggtatgaagctgaggctc 198
             ||||||||||||| ||||||| |||||||
Sbjct: 55353 aggtggaggttgggatgaagcagaggctc 55381



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 170   aggtggaggttggtatgaagctgaggctc 198
             ||||||||||||| ||||||| |||||||
Sbjct: 55172 aggtggaggttgggatgaagcagaggctc 55200
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>dbj|AP007231.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0535F09
          Length = 175050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 372   ggatttgaagggaagaagcgtggatcatttgga 404
             ||||| ||||| ||||||| |||||||||||||
Sbjct: 76327 ggattagaaggaaagaagcttggatcatttgga 76359
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>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0541C02
          Length = 150660

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 372    ggatttgaagggaagaagcgtggatcatttgga 404
              ||||| ||||| ||||||| |||||||||||||
Sbjct: 109876 ggattagaaggaaagaagcttggatcatttgga 109844
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>dbj|AP006065.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0076I16
          Length = 151711

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 372    ggatttgaagggaagaagcgtggatcatttgga 404
              ||||| ||||| ||||||| |||||||||||||
Sbjct: 121804 ggattagaaggaaagaagcttggatcatttgga 121836



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 372   ggatttgaagggaagaagcgtggatcatttgga 404
             ||||| ||||| ||||||| |||||||||||||
Sbjct: 25710 ggattagaaggaaagaagcttggatcatttgga 25678
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>ref|NM_112459.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
           serine/threonine kinase/ protein-tyrosine kinase
           AT3G15890 mRNA, complete cds
          Length = 1388

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 366 ggaaaaggatttgaagggaagaag 389
           |||||||||||||| |||||||||
Sbjct: 166 ggaaaaggatttgatgggaagaag 189
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>gb|AC147341.2| Pan troglodytes BAC clone CH251-31E16 from Y, complete sequence
          Length = 193163

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 189   gctgaggctcagaagtctgggcct 212
             ||||||||| ||||||||||||||
Sbjct: 17189 gctgaggctgagaagtctgggcct 17212
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>ref|XM_543154.2| PREDICTED: Canis familiaris similar to Homeobox protein CDX-2
           (Caudal-type homeobox protein 2) (CDX-3) (LOC486028),
           mRNA
          Length = 945

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 416 actaccacccgcaccaccac 435
           ||||||||||||||||||||
Sbjct: 335 actaccacccgcaccaccac 354
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>emb|BX928750.9| Zebrafish DNA sequence from clone DKEY-162P13 in linkage group 6,
              complete sequence
          Length = 178487

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gttcaggagcacagcagaaa 141
              ||||||||||||||||||||
Sbjct: 122501 gttcaggagcacagcagaaa 122482
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>gb|AC146484.3| Pan troglodytes BAC clone CH251-454A18 from Y, complete sequence
          Length = 205077

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  gctgaggctcagaagtctgggcct 212
            ||||||||| ||||||||||||||
Sbjct: 1454 gctgaggctgagaagtctgggcct 1431
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>emb|AL512324.14| Human DNA sequence from clone RP11-432I13 on chromosome 10 Contains the
             3' end of a breast cancer antigen (NY-BR-1) pseudogene,
             the 3' end of a novel gene, a pseudogene similar to part
             of cubilin (intrinsic factor-cobalamin receptor, CUBN), a
             seven transmembrane helix receptor (FLJ31393) pseudogene,
             the OR13A1 gene for olfactory receptor family 13 subfamily
             A member 1 and two CpG islands, complete sequence
          Length = 168473

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 188   agctgaggctcagaagtctgggcc 211
             |||||||||||||||||| |||||
Sbjct: 90508 agctgaggctcagaagtcagggcc 90485
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>emb|AL355589.8| Human DNA sequence from clone RP11-168F17 on chromosome 9 Contains a
             CpG island, complete sequence
          Length = 143499

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   agcaggaaaaggatttgaag 381
             ||||||||||||||||||||
Sbjct: 35506 agcaggaaaaggatttgaag 35487
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>emb|AL035603.11|HS179E13 Human DNA sequence from clone RP1-179E13 on chromosome 6q22.1-22.33
             Contains ribosomal protein S4, X-linked (cell cycle gene
             2, single-copy abundant mRNA, ribosomal protein S4X
             variant, 40S ribosomal protein S4, X variant)
             (RPS4X)(CCG2, SCAR, SCR10, DXS306) pseudogene, complete
             sequence
          Length = 138443

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   ttggtatgaagctgaggctcagaa 202
             |||||||| |||||||||||||||
Sbjct: 80915 ttggtatgtagctgaggctcagaa 80892
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>gb|AY305858.1| Rattus norvegicus carbonyl reductase 4 (Cbr4) mRNA, complete cds
          Length = 1188

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 gaggttggtatgaagctgag 194
           ||||||||||||||||||||
Sbjct: 429 gaggttggtatgaagctgag 410
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>gb|BC086378.1| Rattus norvegicus carbonic reductase 4, mRNA (cDNA clone MGC:105271
           IMAGE:7302014), complete cds
          Length = 1150

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 gaggttggtatgaagctgag 194
           ||||||||||||||||||||
Sbjct: 395 gaggttggtatgaagctgag 376
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>ref|NM_182672.1| Rattus norvegicus carbonic reductase 4 (Cbr4), mRNA
          Length = 1188

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 gaggttggtatgaagctgag 194
           ||||||||||||||||||||
Sbjct: 429 gaggttggtatgaagctgag 410
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>dbj|BS000561.1| Pan troglodytes chromosome Y clone:PTB-495J17, complete sequences
          Length = 130326

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 189   gctgaggctcagaagtctgggcct 212
             ||||||||| ||||||||||||||
Sbjct: 94657 gctgaggctgagaagtctgggcct 94680
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>dbj|BS000532.1| Pan troglodytes chromosome Y clone:PTB-056N15, complete sequences
          Length = 144899

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 189  gctgaggctcagaagtctgggcct 212
            ||||||||| ||||||||||||||
Sbjct: 3399 gctgaggctgagaagtctgggcct 3422
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 189      gctgaggctcagaagtctgggcct 212
                ||||||||| ||||||||||||||
Sbjct: 23028434 gctgaggctgagaagtctgggcct 23028411
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>gb|AC010229.7| Homo sapiens chromosome 5 clone CTC-312N19, complete sequence
          Length = 70533

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  ctcccagggccaccaaaagg 361
            ||||||||||||||||||||
Sbjct: 7176 ctcccagggccaccaaaagg 7157
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>gb|AC008696.6|AC008696 Homo sapiens chromosome 5 clone CTB-70D19, complete sequence
          Length = 155666

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    ctcccagggccaccaaaagg 361
              ||||||||||||||||||||
Sbjct: 152196 ctcccagggccaccaaaagg 152177
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>emb|BX824680.1|CNS0A5HC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH64ZB04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1323

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 366 ggaaaaggatttgaagggaagaag 389
           |||||||||||||| |||||||||
Sbjct: 145 ggaaaaggatttgatgggaagaag 168
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>gb|AC012068.5|AC012068 Homo sapiens BAC clone RP11-196J6 from Y, complete sequence
          Length = 166516

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 189    gctgaggctcagaagtctgggcct 212
              ||||||||| ||||||||||||||
Sbjct: 141260 gctgaggctgagaagtctgggcct 141283
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>gb|AY088361.1| Arabidopsis thaliana clone 6166 mRNA, complete sequence
          Length = 1388

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 366 ggaaaaggatttgaagggaagaag 389
           |||||||||||||| |||||||||
Sbjct: 167 ggaaaaggatttgatgggaagaag 190
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>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    ttcccaacttcccaagcagg 106
             ||||||||||||||||||||
Sbjct: 39535 ttcccaacttcccaagcagg 39516
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>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0416A11
          Length = 171519

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ttcccaacttcccaagcagg 106
              ||||||||||||||||||||
Sbjct: 166641 ttcccaacttcccaagcagg 166622
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>gb|AC136188.2| Homo sapiens 12 BAC RP11-633L8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 70901

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   atgaagctgaggctcagaagtctg 207
             ||||||||||||||||||| ||||
Sbjct: 43233 atgaagctgaggctcagaactctg 43256
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>gb|AC007014.1|AC007014 Homo sapiens chromosome 16 clone 66H6, complete sequence
          Length = 167080

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   agcagaaacaaagcagagtc 153
             ||||||||||||||||||||
Sbjct: 49640 agcagaaacaaagcagagtc 49659
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>emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, complete sequence
          Length = 231581

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gttcaggagcacagcagaaa 141
              ||||||||||||||||||||
Sbjct: 165001 gttcaggagcacagcagaaa 164982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,956,444
Number of Sequences: 3902068
Number of extensions: 3956444
Number of successful extensions: 79778
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79636
Number of HSP's gapped (non-prelim): 141
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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