ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein... 125 4e-29
2VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein... 125 5e-29
3VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin ... 121 7e-28
4VDAC_PEA (P42054) Outer plastidial membrane protein porin (Volta... 121 7e-28
5VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin ... 118 6e-27
6VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin ... 116 3e-26
7VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin ... 115 5e-26
8VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Vol... 113 2e-25
9VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protei... 33 0.25
10VIRB9_AGRTU (P0A3W6) Protein virB9 precursor 32 0.93
11VIRB9_AGRT9 (P0A3W7) Protein virB9 precursor 32 0.93
12VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin 30 2.1
13VIRB9_AGRT5 (P17799) Protein virB9 precursor 30 2.1
14TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40... 30 2.1
15PEX5_PICPA (P33292) Peroxisomal targeting signal receptor (Perox... 30 3.5
16CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel al... 29 4.6
17WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC... 29 6.0
18TDHA_HAEIN (P44523) TonB-dependent heme receptor A precursor 29 6.0
19DYR1A_RAT (Q63470) Dual specificity tyrosine-phosphorylation-reg... 29 6.0
20TDHA_HAEI8 (Q4QP67) TonB-dependent heme receptor A precursor 28 7.9
21CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alph... 28 7.9
22DYR1A_HUMAN (Q13627) Dual specificity tyrosine-phosphorylation-r... 28 7.9

>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 34)
          Length = 275

 Score =  125 bits (315), Expect = 4e-29
 Identities = 60/82 (73%), Positives = 70/82 (85%)
 Frame = -3

Query: 436 TTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFS 257
           +TAVGAE+ HSFS+NEN ITVGTQH LDPLT++K R NNFG ASAL+QH WRPKS+ T S
Sbjct: 194 STAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVS 253

Query: 256 TEVDTKAVEKSPKFGLALSLKP 191
            EVDTK+V+K  KFGLAL+LKP
Sbjct: 254 GEVDTKSVDKGAKFGLALALKP 275



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>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 36)
          Length = 275

 Score =  125 bits (314), Expect = 5e-29
 Identities = 59/81 (72%), Positives = 70/81 (86%)
 Frame = -3

Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254
           TAVGAE+ HSFSSNENT+T+GTQH LDPLTT+K R N++G ASALIQH WRPKS+ T S 
Sbjct: 195 TAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISG 254

Query: 253 EVDTKAVEKSPKFGLALSLKP 191
           EVDT+A+EKS K GLA++LKP
Sbjct: 255 EVDTRAIEKSAKIGLAVALKP 275



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>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 273

 Score =  121 bits (304), Expect = 7e-28
 Identities = 57/81 (70%), Positives = 68/81 (83%)
 Frame = -3

Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254
           TAVGAE+ HSFSSNEN++T GTQH LDPLT +K R+NN G ASAL+QH WRPKSV T S 
Sbjct: 193 TAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISA 252

Query: 253 EVDTKAVEKSPKFGLALSLKP 191
           EVDTKA++KS K G+A++LKP
Sbjct: 253 EVDTKAIDKSSKVGIAVALKP 273



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>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 275

 Score =  121 bits (304), Expect = 7e-28
 Identities = 58/81 (71%), Positives = 68/81 (83%)
 Frame = -3

Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254
           TAVG +I+H FS+ ENT T+GTQH LDPLTT+KGR  N G ASALIQH WRPKS+IT S+
Sbjct: 195 TAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISS 254

Query: 253 EVDTKAVEKSPKFGLALSLKP 191
           EVDTKA+EKS K GL+L+LKP
Sbjct: 255 EVDTKAIEKSAKIGLSLALKP 275



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>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2|
           (Voltage-dependent anion-selective channel protein 2)
           (VDAC 2)
          Length = 273

 Score =  118 bits (296), Expect = 6e-27
 Identities = 56/85 (65%), Positives = 69/85 (81%)
 Frame = -3

Query: 445 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 266
           V  +T VGAEI+H+F++ EN ITVGTQH LDPLTT+K R NN G+A+ALIQH WRPKS  
Sbjct: 189 VSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFF 248

Query: 265 TFSTEVDTKAVEKSPKFGLALSLKP 191
           T S EVD+KA++KS K G+AL+LKP
Sbjct: 249 TVSGEVDSKAIDKSAKVGIALALKP 273



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>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1|
           (Voltage-dependent anion-selective channel protein 1)
           (VDAC 1)
          Length = 275

 Score =  116 bits (290), Expect = 3e-26
 Identities = 55/81 (67%), Positives = 67/81 (82%)
 Frame = -3

Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254
           TAVGAE++H  SS ++TITVGTQH LDPLT++K R N+ GIASALIQH W+PKS  T S 
Sbjct: 195 TAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISG 254

Query: 253 EVDTKAVEKSPKFGLALSLKP 191
           EVDTK+++KS K GLAL+LKP
Sbjct: 255 EVDTKSIDKSAKVGLALALKP 275



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>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 275

 Score =  115 bits (288), Expect = 5e-26
 Identities = 56/81 (69%), Positives = 66/81 (81%)
 Frame = -3

Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254
           TAVGAE+ HSFSSNEN++T GTQH LDPLT +K R NN G ASALIQH + PKS+ T S 
Sbjct: 195 TAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISA 254

Query: 253 EVDTKAVEKSPKFGLALSLKP 191
           EVDTKA+EKS K G+A++LKP
Sbjct: 255 EVDTKAIEKSSKVGIAIALKP 275



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>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 277

 Score =  113 bits (282), Expect = 2e-25
 Identities = 52/80 (65%), Positives = 66/80 (82%)
 Frame = -3

Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254
           TAVGAE++HS S NE+T+  G+QH LDP TT+K R+NN+G+ASAL+QH WRPKS +T S 
Sbjct: 197 TAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISG 256

Query: 253 EVDTKAVEKSPKFGLALSLK 194
           +VDTKA+EKS K GL+L LK
Sbjct: 257 DVDTKAIEKSTKVGLSLVLK 276



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>VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protein porin|
          Length = 282

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = -3

Query: 424 GAEIAHSFSSNENTITV--GTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTE 251
           G  +    +S  N IT+   +++ LD  T +KG+ N+ G+A+       RP   +    +
Sbjct: 202 GGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQ 261

Query: 250 VDTKAV-EKSPKFGLALS 200
           +DT+ + + + K GL+L+
Sbjct: 262 LDTQRLGQPAHKAGLSLA 279



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>VIRB9_AGRTU (P0A3W6) Protein virB9 precursor|
          Length = 293

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 445 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 266
           V+L+TAVGA +  +F++NE   +V   +  D     +G Y  F  +  L     +P  V+
Sbjct: 45  VRLSTAVGATLVVTFATNETVTSVAVSNSKDLAALPRGNYLFFKASQVLTP---QPVIVL 101

Query: 265 TFS 257
           T S
Sbjct: 102 TAS 104



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>VIRB9_AGRT9 (P0A3W7) Protein virB9 precursor|
          Length = 293

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 445 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 266
           V+L+TAVGA +  +F++NE   +V   +  D     +G Y  F  +  L     +P  V+
Sbjct: 45  VRLSTAVGATLVVTFATNETVTSVAVSNSKDLAALPRGNYLFFKASQVLTP---QPVIVL 101

Query: 265 TFS 257
           T S
Sbjct: 102 TAS 104



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>VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin|
          Length = 283

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/62 (22%), Positives = 33/62 (53%)
 Frame = -3

Query: 409 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 230
           +S + N   + V T++ +DP++ +KG+ N+ G+A+       R    +      DT+ ++
Sbjct: 210 NSKTGNTVGLEVATKYRIDPVSFVKGKINDRGVAAIAYNVLLREGVTLGVGASFDTQKLD 269

Query: 229 KS 224
           ++
Sbjct: 270 QA 271



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>VIRB9_AGRT5 (P17799) Protein virB9 precursor|
          Length = 293

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 445 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASAL 299
           V+L+TAVGA +  +F +NE    V   +  D     +G Y  F  +  L
Sbjct: 45  VRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALPRGNYLFFKASKVL 93



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>TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40 homolog 1|
           (Translocase of outer membrane 40 kDa subunit homolog 1)
          Length = 308

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/78 (25%), Positives = 41/78 (52%)
 Frame = -3

Query: 430 AVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTE 251
           ++  +  +++ S + T +VG  + L     ++G+ ++ G+ASAL++           S E
Sbjct: 233 SLATDFMYNYFSRDVTASVGYDYMLRQ-ARVRGKIDSNGVASALLEERLSMGLNFLLSAE 291

Query: 250 VDTKAVEKSPKFGLALSL 197
           +D K  +K  KFG  L++
Sbjct: 292 LDHK--KKDYKFGFGLTV 307



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>PEX5_PICPA (P33292) Peroxisomal targeting signal receptor (Peroxisomal protein|
           PAS8) (Peroxin-5) (PTS1 receptor)
          Length = 576

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 10  PVAHINWVETPRVAG*KRQISSSHHQSWALQVPSVQA-LFTGPRADGTKML 159
           PV   NW +  + AG + Q  +  HQ   L VP V+A ++ G R  G  M+
Sbjct: 122 PVQSTNWAQDFQQAGPEVQHHAQQHQHPILSVPGVRAGIYGGGRLMGGSMM 172



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>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.3)
            (Ca(v)3.3)
          Length = 2223

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -1

Query: 426  WEQRSLTASRATRTPSPWGRSTSW 355
            ++QRSL++SR++    PWGRS +W
Sbjct: 962  YDQRSLSSSRSSYY-GPWGRSAAW 984



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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 408  TASRATRTPSPWGRSTSWTP*PPLRGAT 325
            T SR  R+ S WGR ++    PP RGA+
Sbjct: 1302 TPSRGGRSGSNWGRGSNMNSGPPRRGAS 1329



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>TDHA_HAEIN (P44523) TonB-dependent heme receptor A precursor|
          Length = 744

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 399 RATRTPSPWGRSTSWTP*PPLRGATTTLASQV 304
           R T   +PWG++++W    P R ATT L   V
Sbjct: 620 RDTSPRNPWGKTSTWIAEIPPRKATTALGFNV 651



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>DYR1A_RAT (Q63470) Dual specificity tyrosine-phosphorylation-regulated kinase|
           1A (EC 2.7.12.2) (Protein kinase minibrain homolog)
           (MNBH) (RP86) (Dual specificity YAK1-related kinase)
          Length = 763

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  GITSSVRPSFVHWTKS*WYQNASILMHPQIPH-QGLSDRASPNL 221
           G TS+ +PS V    S  +  A + M  Q+PH    SDR  PN+
Sbjct: 5   GETSACKPSSVRLAPSFSFHAAGLQMAAQMPHSHQYSDRRQPNI 48



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>TDHA_HAEI8 (Q4QP67) TonB-dependent heme receptor A precursor|
          Length = 745

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 399 RATRTPSPWGRSTSWTP*PPLRGATTTLASQV 304
           R T   +PWG++++W    P R ATT L   +
Sbjct: 621 RDTSPRNPWGKTSTWIAEIPPRKATTALGFNI 652



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>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.3)
           (CaVT.3)
          Length = 2201

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -1

Query: 426 WEQRSLTASRATRTPSPWGRSTSW 355
           ++QRSL++SR++    PWGRS +W
Sbjct: 920 YDQRSLSSSRSSYY-GPWGRSGTW 942



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>DYR1A_HUMAN (Q13627) Dual specificity tyrosine-phosphorylation-regulated kinase|
           1A (EC 2.7.12.1) (Protein kinase minibrain homolog)
           (MNBH) (HP86) (Dual specificity YAK1-related kinase)
          Length = 763

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  GITSSVRPSFVHWTKS*WYQNASILMHPQIPH-QGLSDRASPNL 221
           G TS+ +PS V    S  +  A + M  Q+PH    SDR  PN+
Sbjct: 5   GETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNI 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,902,361
Number of Sequences: 219361
Number of extensions: 1270920
Number of successful extensions: 3363
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3360
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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