Clone Name | rbart54c01 |
---|---|
Clone Library Name | barley_pub |
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 125 bits (315), Expect = 4e-29 Identities = 60/82 (73%), Positives = 70/82 (85%) Frame = -3 Query: 436 TTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFS 257 +TAVGAE+ HSFS+NEN ITVGTQH LDPLT++K R NNFG ASAL+QH WRPKS+ T S Sbjct: 194 STAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVS 253 Query: 256 TEVDTKAVEKSPKFGLALSLKP 191 EVDTK+V+K KFGLAL+LKP Sbjct: 254 GEVDTKSVDKGAKFGLALALKP 275
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 125 bits (314), Expect = 5e-29 Identities = 59/81 (72%), Positives = 70/81 (86%) Frame = -3 Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254 TAVGAE+ HSFSSNENT+T+GTQH LDPLTT+K R N++G ASALIQH WRPKS+ T S Sbjct: 195 TAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISG 254 Query: 253 EVDTKAVEKSPKFGLALSLKP 191 EVDT+A+EKS K GLA++LKP Sbjct: 255 EVDTRAIEKSAKIGLAVALKP 275
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 121 bits (304), Expect = 7e-28 Identities = 57/81 (70%), Positives = 68/81 (83%) Frame = -3 Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254 TAVGAE+ HSFSSNEN++T GTQH LDPLT +K R+NN G ASAL+QH WRPKSV T S Sbjct: 193 TAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISA 252 Query: 253 EVDTKAVEKSPKFGLALSLKP 191 EVDTKA++KS K G+A++LKP Sbjct: 253 EVDTKAIDKSSKVGIAVALKP 273
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 121 bits (304), Expect = 7e-28 Identities = 58/81 (71%), Positives = 68/81 (83%) Frame = -3 Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254 TAVG +I+H FS+ ENT T+GTQH LDPLTT+KGR N G ASALIQH WRPKS+IT S+ Sbjct: 195 TAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISS 254 Query: 253 EVDTKAVEKSPKFGLALSLKP 191 EVDTKA+EKS K GL+L+LKP Sbjct: 255 EVDTKAIEKSAKIGLSLALKP 275
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 118 bits (296), Expect = 6e-27 Identities = 56/85 (65%), Positives = 69/85 (81%) Frame = -3 Query: 445 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 266 V +T VGAEI+H+F++ EN ITVGTQH LDPLTT+K R NN G+A+ALIQH WRPKS Sbjct: 189 VSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFF 248 Query: 265 TFSTEVDTKAVEKSPKFGLALSLKP 191 T S EVD+KA++KS K G+AL+LKP Sbjct: 249 TVSGEVDSKAIDKSAKVGIALALKP 273
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 116 bits (290), Expect = 3e-26 Identities = 55/81 (67%), Positives = 67/81 (82%) Frame = -3 Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254 TAVGAE++H SS ++TITVGTQH LDPLT++K R N+ GIASALIQH W+PKS T S Sbjct: 195 TAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISG 254 Query: 253 EVDTKAVEKSPKFGLALSLKP 191 EVDTK+++KS K GLAL+LKP Sbjct: 255 EVDTKSIDKSAKVGLALALKP 275
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 115 bits (288), Expect = 5e-26 Identities = 56/81 (69%), Positives = 66/81 (81%) Frame = -3 Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254 TAVGAE+ HSFSSNEN++T GTQH LDPLT +K R NN G ASALIQH + PKS+ T S Sbjct: 195 TAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISA 254 Query: 253 EVDTKAVEKSPKFGLALSLKP 191 EVDTKA+EKS K G+A++LKP Sbjct: 255 EVDTKAIEKSSKVGIAIALKP 275
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 113 bits (282), Expect = 2e-25 Identities = 52/80 (65%), Positives = 66/80 (82%) Frame = -3 Query: 433 TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFST 254 TAVGAE++HS S NE+T+ G+QH LDP TT+K R+NN+G+ASAL+QH WRPKS +T S Sbjct: 197 TAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISG 256 Query: 253 EVDTKAVEKSPKFGLALSLK 194 +VDTKA+EKS K GL+L LK Sbjct: 257 DVDTKAIEKSTKVGLSLVLK 276
>VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protein porin| Length = 282 Score = 33.5 bits (75), Expect = 0.25 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Frame = -3 Query: 424 GAEIAHSFSSNENTITV--GTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTE 251 G + +S N IT+ +++ LD T +KG+ N+ G+A+ RP + + Sbjct: 202 GGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQ 261 Query: 250 VDTKAV-EKSPKFGLALS 200 +DT+ + + + K GL+L+ Sbjct: 262 LDTQRLGQPAHKAGLSLA 279
>VIRB9_AGRTU (P0A3W6) Protein virB9 precursor| Length = 293 Score = 31.6 bits (70), Expect = 0.93 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = -3 Query: 445 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 266 V+L+TAVGA + +F++NE +V + D +G Y F + L +P V+ Sbjct: 45 VRLSTAVGATLVVTFATNETVTSVAVSNSKDLAALPRGNYLFFKASQVLTP---QPVIVL 101 Query: 265 TFS 257 T S Sbjct: 102 TAS 104
>VIRB9_AGRT9 (P0A3W7) Protein virB9 precursor| Length = 293 Score = 31.6 bits (70), Expect = 0.93 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = -3 Query: 445 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 266 V+L+TAVGA + +F++NE +V + D +G Y F + L +P V+ Sbjct: 45 VRLSTAVGATLVVTFATNETVTSVAVSNSKDLAALPRGNYLFFKASQVLTP---QPVIVL 101 Query: 265 TFS 257 T S Sbjct: 102 TAS 104
>VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin| Length = 283 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/62 (22%), Positives = 33/62 (53%) Frame = -3 Query: 409 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 230 +S + N + V T++ +DP++ +KG+ N+ G+A+ R + DT+ ++ Sbjct: 210 NSKTGNTVGLEVATKYRIDPVSFVKGKINDRGVAAIAYNVLLREGVTLGVGASFDTQKLD 269 Query: 229 KS 224 ++ Sbjct: 270 QA 271
>VIRB9_AGRT5 (P17799) Protein virB9 precursor| Length = 293 Score = 30.4 bits (67), Expect = 2.1 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = -3 Query: 445 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASAL 299 V+L+TAVGA + +F +NE V + D +G Y F + L Sbjct: 45 VRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALPRGNYLFFKASKVL 93
>TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40 homolog 1| (Translocase of outer membrane 40 kDa subunit homolog 1) Length = 308 Score = 30.4 bits (67), Expect = 2.1 Identities = 20/78 (25%), Positives = 41/78 (52%) Frame = -3 Query: 430 AVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTE 251 ++ + +++ S + T +VG + L ++G+ ++ G+ASAL++ S E Sbjct: 233 SLATDFMYNYFSRDVTASVGYDYMLRQ-ARVRGKIDSNGVASALLEERLSMGLNFLLSAE 291 Query: 250 VDTKAVEKSPKFGLALSL 197 +D K +K KFG L++ Sbjct: 292 LDHK--KKDYKFGFGLTV 307
>PEX5_PICPA (P33292) Peroxisomal targeting signal receptor (Peroxisomal protein| PAS8) (Peroxin-5) (PTS1 receptor) Length = 576 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +1 Query: 10 PVAHINWVETPRVAG*KRQISSSHHQSWALQVPSVQA-LFTGPRADGTKML 159 PV NW + + AG + Q + HQ L VP V+A ++ G R G M+ Sbjct: 122 PVQSTNWAQDFQQAGPEVQHHAQQHQHPILSVPGVRAGIYGGGRLMGGSMM 172
>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (Ca(v)3.3) Length = 2223 Score = 29.3 bits (64), Expect = 4.6 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = -1 Query: 426 WEQRSLTASRATRTPSPWGRSTSW 355 ++QRSL++SR++ PWGRS +W Sbjct: 962 YDQRSLSSSRSSYY-GPWGRSAAW 984
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -1 Query: 408 TASRATRTPSPWGRSTSWTP*PPLRGAT 325 T SR R+ S WGR ++ PP RGA+ Sbjct: 1302 TPSRGGRSGSNWGRGSNMNSGPPRRGAS 1329
>TDHA_HAEIN (P44523) TonB-dependent heme receptor A precursor| Length = 744 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 399 RATRTPSPWGRSTSWTP*PPLRGATTTLASQV 304 R T +PWG++++W P R ATT L V Sbjct: 620 RDTSPRNPWGKTSTWIAEIPPRKATTALGFNV 651
>DYR1A_RAT (Q63470) Dual specificity tyrosine-phosphorylation-regulated kinase| 1A (EC 2.7.12.2) (Protein kinase minibrain homolog) (MNBH) (RP86) (Dual specificity YAK1-related kinase) Length = 763 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +3 Query: 93 GITSSVRPSFVHWTKS*WYQNASILMHPQIPH-QGLSDRASPNL 221 G TS+ +PS V S + A + M Q+PH SDR PN+ Sbjct: 5 GETSACKPSSVRLAPSFSFHAAGLQMAAQMPHSHQYSDRRQPNI 48
>TDHA_HAEI8 (Q4QP67) TonB-dependent heme receptor A precursor| Length = 745 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 399 RATRTPSPWGRSTSWTP*PPLRGATTTLASQV 304 R T +PWG++++W P R ATT L + Sbjct: 621 RDTSPRNPWGKTSTWIAEIPPRKATTALGFNI 652
>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (CaVT.3) Length = 2201 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = -1 Query: 426 WEQRSLTASRATRTPSPWGRSTSW 355 ++QRSL++SR++ PWGRS +W Sbjct: 920 YDQRSLSSSRSSYY-GPWGRSGTW 942
>DYR1A_HUMAN (Q13627) Dual specificity tyrosine-phosphorylation-regulated kinase| 1A (EC 2.7.12.1) (Protein kinase minibrain homolog) (MNBH) (HP86) (Dual specificity YAK1-related kinase) Length = 763 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +3 Query: 93 GITSSVRPSFVHWTKS*WYQNASILMHPQIPH-QGLSDRASPNL 221 G TS+ +PS V S + A + M Q+PH SDR PN+ Sbjct: 5 GETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNI 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,902,361 Number of Sequences: 219361 Number of extensions: 1270920 Number of successful extensions: 3363 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3276 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3360 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)