ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X82149.1|TAVDAC2 T.aestivum VDAC2 mRNA for voltage dependent... 624 e-176
2ref|XM_475771.1| Oryza sativa (japonica cultivar-group), predic... 145 1e-31
3gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome... 145 1e-31
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
5emb|AJ251562.1|OSA251562 Oryza sativa mRNA for voltage-dependent... 145 1e-31
6dbj|AK071833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
7gb|AF178952.1|AF178952 Zea mays voltage-dependent anion channel ... 123 5e-25
8gb|AY104198.1| Zea mays PCO099812 mRNA sequence 123 5e-25
9ref|NM_191753.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
11dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
12dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
13ref|XM_450604.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
14gb|BT012680.1| Lycopersicon esculentum clone 113526R, mRNA sequence 50 0.006
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
16dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
17emb|Y18104.1|OSA18104 Oryza sativa mRNA for voltage-dependent an... 50 0.006
18dbj|AK072129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
19dbj|AK061261.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
20dbj|AK060652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
21gb|AY316737.1| Lotus corniculatus var. japonicus VDAC1.1 mRNA, c... 46 0.097
22emb|X74799.1|PAAS4EF P.anserina AS4 gene for translation elongat... 46 0.097
23dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.097
24dbj|AP004901.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.097
25ref|XM_418162.1| PREDICTED: Gallus gallus similar to type I hair... 42 1.5
26gb|BT014102.1| Lycopersicon esculentum clone 133206R, mRNA sequence 42 1.5
27emb|X80387.1|STPORIN2 S.tuberosum pPOM36II mRNA for 36kDa porinII 42 1.5
28emb|X80386.1|STPORIN1 S.tuberosum pPOM34 mRNA for mitochondrial ... 42 1.5
29emb|X77733.1|TAVDAC1 T.aestivum VDAC 1 mRNA 42 1.5
30gb|AC183761.3| Pan troglodytes BAC clone CH251-710C5 from chromo... 40 6.0
31gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome 40 6.0
32gb|AC122855.4| Mus musculus BAC clone RP23-120H20 from chromosom... 40 6.0
33gb|AY445665.1| Photorhabdus luminescens putative toxin transport... 40 6.0
34gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome... 40 6.0
35gb|AC092637.2| Homo sapiens BAC clone RP11-358M3 from 7, complet... 40 6.0
36emb|AJ616216.2| Takifugu rubripes ifng gene for interferon gamma... 40 6.0
37emb|X80388.1|STPORIN3 S.tuberosum pPOM36I mRNA for 36kDA porinI 40 6.0
38gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome 40 6.0
39dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.0
40gb|AC154461.2| Mus musculus BAC clone RP24-163I13 from 14, compl... 40 6.0
41emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on ch... 40 6.0 
>emb|X82149.1|TAVDAC2 T.aestivum VDAC2 mRNA for voltage dependent anion channel
          Length = 1174

 Score =  624 bits (315), Expect = e-176
 Identities = 422/453 (93%), Gaps = 6/453 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcataacggccagtagcacatatcaactgggtagaaa--cccctcgggtag--caggcta 56
            |||||||| ||||||||||| |||||| |||||||||  |||||| |||||  |||||||
Sbjct: 1015 gcataacgaccagtagcacagatcaacagggtagaaaaccccctcaggtagaacaggcta 956

                                                                        
Query: 57   aaaa-cgacagataagttcgtcgcatcaccaaagttgggcattacaagttccgtccgtcc 115
            |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 955  aaaaacgacagataagtttgtcgcatcaccaaagttgggcattacaagttccgtctgtcc 896

                                                                        
Query: 116  aa-gctttgttcactggaccaagagctgatggtaccaaaatgctagcatcctaatgcacc 174
            || ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 895  aaagctttgttcgctggaccaagagctgatggtaccgaaatgctagcatcctaacgcacc 836

                                                                        
Query: 175  cgcaaatcccacatcagggcttgagtgacagggccagcccgaacttggggctcttctcaa 234
            ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 835  cgcgaatcccaaatcagggcttgagtgacagggccagcccaaacttggggctcttctcaa 776

                                                                        
Query: 235  cggccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgct 294
             ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 775  tggccttggtgtcaacctcggtggagaaggtgatgagagacttgggcctccacgcgtgct 716

                                                                        
Query: 295  ggatgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggt 354
            |||||||||||||||||| ||| ||||||||||| |||||||| |  |||||||||||||
Sbjct: 715  ggatgagcgcacttgcgacgccgaagttgttgtaacgccccttcacagtggtcagggggt 656

                                                                        
Query: 355  ccagctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtgagcga 414
            ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct: 655  ccagctcgtgctgcgtcccaatggtgatggtgttctcgttgcttgagaagctgtgagcga 596

                                             
Query: 415  tctctgctcccacagcagtggtgagctgcacct 447
            ||||||||||||||||||||||| |||||||||
Sbjct: 595  tctctgctcccacagcagtggtgcgctgcacct 563
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>ref|XM_475771.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 843

 Score =  145 bits (73), Expect = 1e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                       
Query: 203 cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 262
           ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 828 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 769

                                                                       
Query: 263 ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 322
           ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 768 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 709

                                                                       
Query: 323 gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 382
           |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 708 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 649

                                                            
Query: 383 ggtgttctcgttgctcgagaagctgtgagcgatctctgctcccacagca 431
            ||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 648 agtgttctcgttgctcgagaagctgtgagccagctctgctccaacagca 600
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>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01,
             complete sequence
          Length = 147704

 Score =  145 bits (73), Expect = 1e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                         
Query: 203   cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 262
             ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 69059 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 69000

                                                                         
Query: 263   ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 322
             ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 68999 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 68940

                                                                         
Query: 323   gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 382
             |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 68939 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 68880

                                                              
Query: 383   ggtgttctcgttgctcgagaagctgtgagcgatctctgctcccacagca 431
              ||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 68879 agtgttctcgttgctcgagaagctgtgagccagctctgctccaacagca 68831
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  145 bits (73), Expect = 1e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                            
Query: 203      cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 262
                ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 26424368 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 26424309

                                                                            
Query: 263      ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 322
                ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 26424308 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 26424249

                                                                            
Query: 323      gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 382
                |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 26424248 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 26424189

                                                                 
Query: 383      ggtgttctcgttgctcgagaagctgtgagcgatctctgctcccacagca 431
                 ||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 26424188 agtgttctcgttgctcgagaagctgtgagccagctctgctccaacagca 26424140
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>emb|AJ251562.1|OSA251562 Oryza sativa mRNA for voltage-dependent anion channel (VDAC2 gene)
          Length = 1189

 Score =  145 bits (73), Expect = 1e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                       
Query: 203 cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 262
           ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 867 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 808

                                                                       
Query: 263 ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 322
           ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 807 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 748

                                                                       
Query: 323 gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 382
           |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 747 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 688

                                                            
Query: 383 ggtgttctcgttgctcgagaagctgtgagcgatctctgctcccacagca 431
            ||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 687 agtgttctcgttgctcgagaagctgtgagccagctctgctccaacagca 639
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>dbj|AK071833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121K13, full
           insert sequence
          Length = 1231

 Score =  145 bits (73), Expect = 1e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                       
Query: 203 cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 262
           ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 911 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 852

                                                                       
Query: 263 ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 322
           ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 851 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 792

                                                                       
Query: 323 gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 382
           |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 791 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 732

                                                            
Query: 383 ggtgttctcgttgctcgagaagctgtgagcgatctctgctcccacagca 431
            ||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 731 agtgttctcgttgctcgagaagctgtgagccagctctgctccaacagca 683
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>gb|AF178952.1|AF178952 Zea mays voltage-dependent anion channel protein 2 (vdac2) mRNA,
           complete cds; nuclear gene for mitochondrial product
          Length = 1129

 Score =  123 bits (62), Expect = 5e-25
 Identities = 155/186 (83%)
 Strand = Plus / Minus

                                                                       
Query: 224 gctcttctcaacggccttggtatcaacctcggtggagaaggtgatgacagacttgggcct 283
           ||||||||| | ||||||||| || ||||| ||||||| |||||  |  |||||||||||
Sbjct: 881 gctcttctcgatggccttggtgtccacctccgtggagatggtgaccagtgacttgggcct 822

                                                                       
Query: 284 ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggt 343
           |||| |||| ||||| || |||||||| |||||  |||||||| ||||  |||| |  ||
Sbjct: 821 ccactcgtgttggatcagtgcacttgccatgccgtagttgttgaagcgtgccttcacagt 762

                                                                       
Query: 344 ggtcagggggtccagctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaa 403
           |||||| ||||||||  | ||||||||||| | ||||||||||||| ||||| |||||||
Sbjct: 761 ggtcagagggtccagggcatgctgcgtcccaaaggtgatggtgttcccgttggtcgagaa 702

                 
Query: 404 gctgtg 409
           ||||||
Sbjct: 701 gctgtg 696
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>gb|AY104198.1| Zea mays PCO099812 mRNA sequence
          Length = 1156

 Score =  123 bits (62), Expect = 5e-25
 Identities = 155/186 (83%)
 Strand = Plus / Minus

                                                                       
Query: 224 gctcttctcaacggccttggtatcaacctcggtggagaaggtgatgacagacttgggcct 283
           ||||||||| | ||||||||| || ||||| ||||||| |||||  |  |||||||||||
Sbjct: 915 gctcttctcgatggccttggtgtccacctccgtggagatggtgaccagtgacttgggcct 856

                                                                       
Query: 284 ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggt 343
           |||| |||| ||||| || |||||||| |||||  |||||||| ||||  |||| |  ||
Sbjct: 855 ccactcgtgttggatcagtgcacttgccatgccgtagttgttgaagcgtgccttcacagt 796

                                                                       
Query: 344 ggtcagggggtccagctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaa 403
           |||||| ||||||||  | ||||||||||| | ||||||||||||| ||||| |||||||
Sbjct: 795 ggtcagagggtccagggcatgctgcgtcccaaaggtgatggtgttcccgttggtcgagaa 736

                 
Query: 404 gctgtg 409
           ||||||
Sbjct: 735 gctgtg 730
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>ref|NM_191753.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 140/173 (80%)
 Strand = Plus / Minus

                                                                       
Query: 237 gccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgctgg 296
           |||||||| || ||||||| |||||  || | || ||||||||| |||||| ||||||||
Sbjct: 905 gccttggtgtcgacctcggcggagagcgttaagaaagacttgggtctccactcgtgctgg 846

                                                                       
Query: 297 atgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggtcc 356
           ||||| || ||  | |||||   ||||||||||||| |||| | ||| || || ||||||
Sbjct: 845 atgagggcgctgaccatgccgtggttgttgtagcgcgccttcacggtagtgagagggtcc 786

                                                                
Query: 357 agctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtg 409
           ||  |||||||| |||| | | ||| ||||||||| ||| |||||||||||||
Sbjct: 785 agggcgtgctgcatcccgaagctgagggtgttctccttggtcgagaagctgtg 733
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 140/173 (80%)
 Strand = Plus / Plus

                                                                            
Query: 237      gccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgctgg 296
                |||||||| || ||||||| |||||  || | || ||||||||| |||||| ||||||||
Sbjct: 29763787 gccttggtgtcgacctcggcggagagcgttaagaaagacttgggtctccactcgtgctgg 29763846

                                                                            
Query: 297      atgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggtcc 356
                ||||| || ||  | |||||   ||||||||||||| |||| | ||| || || ||||||
Sbjct: 29763847 atgagggcgctgaccatgccgtggttgttgtagcgcgccttcacggtagtgagagggtcc 29763906

                                                                     
Query: 357      agctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtg 409
                ||  |||||||| |||| | | ||| ||||||||| ||| |||||||||||||
Sbjct: 29763907 agggcgtgctgcatcccgaagctgagggtgttctccttggtcgagaagctgtg 29763959
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>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0683B11
          Length = 155955

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 140/173 (80%)
 Strand = Plus / Plus

                                                                        
Query: 237  gccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgctgg 296
            |||||||| || ||||||| |||||  || | || ||||||||| |||||| ||||||||
Sbjct: 7882 gccttggtgtcgacctcggcggagagcgttaagaaagacttgggtctccactcgtgctgg 7941

                                                                        
Query: 297  atgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggtcc 356
            ||||| || ||  | |||||   ||||||||||||| |||| | ||| || || ||||||
Sbjct: 7942 atgagggcgctgaccatgccgtggttgttgtagcgcgccttcacggtagtgagagggtcc 8001

                                                                 
Query: 357  agctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtg 409
            ||  |||||||| |||| | | ||| ||||||||| ||| |||||||||||||
Sbjct: 8002 agggcgtgctgcatcccgaagctgagggtgttctccttggtcgagaagctgtg 8054
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>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1131B07
          Length = 109135

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 140/173 (80%)
 Strand = Plus / Plus

                                                                         
Query: 237   gccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgctgg 296
             |||||||| || ||||||| |||||  || | || ||||||||| |||||| ||||||||
Sbjct: 93518 gccttggtgtcgacctcggcggagagcgttaagaaagacttgggtctccactcgtgctgg 93577

                                                                         
Query: 297   atgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggtcc 356
             ||||| || ||  | |||||   ||||||||||||| |||| | ||| || || ||||||
Sbjct: 93578 atgagggcgctgaccatgccgtggttgttgtagcgcgccttcacggtagtgagagggtcc 93637

                                                                  
Query: 357   agctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtg 409
             ||  |||||||| |||| | | ||| ||||||||| ||| |||||||||||||
Sbjct: 93638 agggcgtgctgcatcccgaagctgagggtgttctccttggtcgagaagctgtg 93690
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>ref|XM_450604.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1124

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 377 ggtgatggtgttctcgttgctcgagaagctgtg 409
           ||||| || ||||||||||||||||||||||||
Sbjct: 725 ggtgagggagttctcgttgctcgagaagctgtg 693
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>gb|BT012680.1| Lycopersicon esculentum clone 113526R, mRNA sequence
          Length = 1095

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 362 gtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtga 410
           |||||| || |||||||||||| ||||||| ||| | ||||||||||||
Sbjct: 706 gtgctgagtacccacggtgatgatgttctcattggtagagaagctgtga 658
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 377      ggtgatggtgttctcgttgctcgagaagctgtg 409
                ||||| || ||||||||||||||||||||||||
Sbjct: 11754767 ggtgagggagttctcgttgctcgagaagctgtg 11754735
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 377    ggtgatggtgttctcgttgctcgagaagctgtg 409
              ||||| || ||||||||||||||||||||||||
Sbjct: 189401 ggtgagggagttctcgttgctcgagaagctgtg 189369
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>emb|Y18104.1|OSA18104 Oryza sativa mRNA for voltage-dependent anion channel
          Length = 1093

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 377 ggtgatggtgttctcgttgctcgagaagctgtg 409
           ||||| || ||||||||||||||||||||||||
Sbjct: 662 ggtgagggagttctcgttgctcgagaagctgtg 630
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>dbj|AK072129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126C04, full
            insert sequence
          Length = 3071

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 377  ggtgatggtgttctcgttgctcgagaagctgtg 409
            ||||| || ||||||||||||||||||||||||
Sbjct: 2672 ggtgagggagttctcgttgctcgagaagctgtg 2640
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>dbj|AK061261.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C01, full
           insert sequence
          Length = 1125

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 377 ggtgatggtgttctcgttgctcgagaagctgtg 409
           ||||| || ||||||||||||||||||||||||
Sbjct: 725 ggtgagggagttctcgttgctcgagaagctgtg 693
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>dbj|AK060652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H05, full
           insert sequence
          Length = 1242

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 377 ggtgatggtgttctcgttgctcgagaagctgtg 409
           ||||| || ||||||||||||||||||||||||
Sbjct: 739 ggtgagggagttctcgttgctcgagaagctgtg 707
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>gb|AY316737.1| Lotus corniculatus var. japonicus VDAC1.1 mRNA, complete cds
          Length = 1203

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 284 ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttg 326
           |||| ||||||||||||| ||||||||  |||| |||||||||
Sbjct: 814 ccactcgtgctggatgagagcacttgccttgccgaagttgttg 772
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>emb|X74799.1|PAAS4EF P.anserina AS4 gene for translation elongation factor EF-1-alpha
          Length = 2157

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 215  gaacttggggctcttctcaacggcctt 241
            |||||||||||||| ||||||||||||
Sbjct: 1898 gaacttggggctctcctcaacggcctt 1872
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>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199,
              complete sequence
          Length = 123325

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 284    ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttg 326
              |||| ||||||||||||| ||||||||  |||| |||||||||
Sbjct: 119547 ccactcgtgctggatgagagcacttgccttgccgaagttgttg 119589
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>dbj|AP004901.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13M13, TM0051b,
            complete sequence
          Length = 54022

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 284  ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttg 326
            |||| ||||||||||||| ||||||||  |||| |||||||||
Sbjct: 8671 ccactcgtgctggatgagagcacttgccttgccgaagttgttg 8629
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>ref|XM_418162.1| PREDICTED: Gallus gallus similar to type I hair keratin KA31
           (LOC420039), mRNA
          Length = 2583

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 236 ggccttggtatcaacctcggtggag 260
           ||||||||||||| |||||||||||
Sbjct: 226 ggccttggtatcagcctcggtggag 250
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>gb|BT014102.1| Lycopersicon esculentum clone 133206R, mRNA sequence
          Length = 1133

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 363 tgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtgag 411
           ||||| ||||| | |||||  |||||||| ||||| |||||||||||||
Sbjct: 731 tgctgtgtcccaatggtgagtgtgttctcattgcttgagaagctgtgag 683
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>emb|X80387.1|STPORIN2 S.tuberosum pPOM36II mRNA for 36kDa porinII
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 363 tgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtgag 411
           ||||| ||||| | |||||  |||||||| ||||| |||||||||||||
Sbjct: 699 tgctgtgtcccaatggtgagtgtgttctcattgcttgagaagctgtgag 651
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>emb|X80386.1|STPORIN1 S.tuberosum pPOM34 mRNA for mitochondrial 34kDa porin
          Length = 1210

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 362 gtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtga 410
           |||||| || |||||||| ||| ||||||| ||| | ||||||||||||
Sbjct: 707 gtgctgagtacccacggtaatgatgttctcattggtggagaagctgtga 659
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>emb|X77733.1|TAVDAC1 T.aestivum VDAC 1 mRNA
          Length = 1159

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 385 tgttctcgttgctcgagaagctgtg 409
           ||||||||||||| |||||||||||
Sbjct: 682 tgttctcgttgcttgagaagctgtg 658
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>gb|AC183761.3| Pan troglodytes BAC clone CH251-710C5 from chromosome 7, complete
              sequence
          Length = 205916

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    aatgctagcatcctaatgca 172
              ||||||||||||||||||||
Sbjct: 191956 aatgctagcatcctaatgca 191975
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>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 378    gtgatggtgttctcgttgctcgag 401
              |||||||||| |||||||||||||
Sbjct: 742998 gtgatggtgtcctcgttgctcgag 742975
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>gb|AC122855.4| Mus musculus BAC clone RP23-120H20 from chromosome 14, complete
             sequence
          Length = 202424

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   ctctgctcccacagcagtgg 435
             ||||||||||||||||||||
Sbjct: 36917 ctctgctcccacagcagtgg 36936
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>gb|AY445665.1| Photorhabdus luminescens putative toxin transporter (mtpB) gene,
            partial cds; and putative toxin transporter (mtpD),
            putative toxin transporter (mtpE), and Mcf2 (mcf2) genes,
            complete cds
          Length = 13732

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 250  cctcggtggagaaggtgatgacag 273
            ||||| ||||||||||||||||||
Sbjct: 1468 cctcgctggagaaggtgatgacag 1491
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>gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome 14, complete sequence
          Length = 179789

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   ctctgctcccacagcagtgg 435
             ||||||||||||||||||||
Sbjct: 25947 ctctgctcccacagcagtgg 25928
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>gb|AC092637.2| Homo sapiens BAC clone RP11-358M3 from 7, complete sequence
          Length = 126643

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   aatgctagcatcctaatgca 172
             ||||||||||||||||||||
Sbjct: 88845 aatgctagcatcctaatgca 88826
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>emb|AJ616216.2| Takifugu rubripes ifng gene for interferon gamma, exons 1-4
          Length = 3030

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 141  tgatggtaccaaaatgctagcatcctaa 168
            |||||||||||| |||||||||| ||||
Sbjct: 1679 tgatggtaccaacatgctagcatgctaa 1706
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>emb|X80388.1|STPORIN3 S.tuberosum pPOM36I mRNA for 36kDA porinI
          Length = 1030

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 384 gtgttctcgttgctcgagaagctgtgag 411
           |||||||| ||||| |||||||||||||
Sbjct: 638 gtgttctcattgcttgagaagctgtgag 611
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>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 378    gtgatggtgttctcgttgctcgag 401
              |||||||||| |||||||||||||
Sbjct: 740272 gtgatggtgtcctcgttgctcgag 740249
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 286     acgcgtgctggatgagcgca 305
               ||||||||||||||||||||
Sbjct: 4144682 acgcgtgctggatgagcgca 4144701
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>gb|AC154461.2| Mus musculus BAC clone RP24-163I13 from 14, complete sequence
          Length = 202273

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   ctctgctcccacagcagtgg 435
             ||||||||||||||||||||
Sbjct: 12685 ctctgctcccacagcagtgg 12704
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>emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on chromosome 14, complete
              sequence
          Length = 201441

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    ctctgctcccacagcagtgg 435
              ||||||||||||||||||||
Sbjct: 181837 ctctgctcccacagcagtgg 181856


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,702,315
Number of Sequences: 3902068
Number of extensions: 2702315
Number of successful extensions: 44703
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44585
Number of HSP's gapped (non-prelim): 112
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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