ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54b10 |
|---|---|
| Clone Library Name | barley_pub |
>RPA3_SCHPO (O14086) DNA-directed RNA polymerase I 49 kDa polypeptide (EC| 2.7.7.6) (A49) Length = 425 Score = 30.8 bits (68), Expect = 1.4 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 13/92 (14%) Frame = -1 Query: 426 STEKYELLINYILVLTLFADDFRSEPTDICADLKMNRQMLKPYYDQLGCKSVS------- 268 S+ + + +I YILVL L D++ ++ + DL + + +GC+ ++ Sbjct: 333 SSREVDKIICYILVLCLIVDNYSTDVLTLANDLNVKTMKANELFRTVGCRIMAYTETQRM 392 Query: 267 ------TGAFKPFFMTLPAPLKFPQQVTRRRR 190 T A L PL+FP+ R R Sbjct: 393 ALGLNKTDAKNHKRAVLKIPLEFPKPRRGRAR 424
>HEMA_IAXIA (P28731) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain] (Fragment) Length = 344 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 127 KLCALSSVSPLLLGNCYKRGTIL 59 KLC L ++PL LGNC G IL Sbjct: 57 KLCRLKGIAPLQLGNCSIAGWIL 79
>HEMA_IATAI (P12590) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain] (Fragment) Length = 344 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 127 KLCALSSVSPLLLGNCYKRGTIL 59 KLC L ++PL LGNC G IL Sbjct: 57 KLCRLKGIAPLQLGNCSIAGWIL 79
>HEMA_IAHAR (P28730) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain] (Fragment) Length = 344 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 127 KLCALSSVSPLLLGNCYKRGTIL 59 KLC L ++PL LGNC G IL Sbjct: 57 KLCRLKGIAPLQLGNCSIAGWIL 79
>NADD_STRR6 (P65505) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 209 Score = 29.3 bits (64), Expect = 4.0 Identities = 24/88 (27%), Positives = 36/88 (40%) Frame = -2 Query: 266 QVLLNPFL*HFQPPSSSHNKSQGEGGENNHLSTGFHLIGKVCIAPVEAVCPQLSFTIVAW 87 QVLL P +QPP ++ E L I + I +E +S+T Sbjct: 55 QVLLMP---EYQPPHVDKKETIPEHHRLKMLELAIEGIDGLVIETIELERKGISYTYDTM 111 Query: 86 ELLQERNHITDI*FACYWNLVFDATSWY 3 ++L E+N TD F ++V WY Sbjct: 112 KILTEKNPDTDYYFIIGADMVDYLPKWY 139
>NADD_STRPN (P65504) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 209 Score = 29.3 bits (64), Expect = 4.0 Identities = 24/88 (27%), Positives = 36/88 (40%) Frame = -2 Query: 266 QVLLNPFL*HFQPPSSSHNKSQGEGGENNHLSTGFHLIGKVCIAPVEAVCPQLSFTIVAW 87 QVLL P +QPP ++ E L I + I +E +S+T Sbjct: 55 QVLLMP---EYQPPHVDKKETIPEHHRLKMLELAIEGIDGLVIETIELERKGISYTYDTM 111 Query: 86 ELLQERNHITDI*FACYWNLVFDATSWY 3 ++L E+N TD F ++V WY Sbjct: 112 KILTEKNPDTDYYFIIGADMVDYLPKWY 139
>ATL_STAES (Q8CPQ1) Bifunctional autolysin precursor [Includes:| N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28); Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)] Length = 1335 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -1 Query: 426 STEKYELLINYILVLTLFADDFRSEPTDICADLKMNRQMLKPYYDQ 289 ST+ NY V+ F +PT K NR LKPYY+Q Sbjct: 1019 STDAQSTPYNYTFVINNSKSYFYMDPT------KANRYSLKPYYEQ 1058
>ATL_STAEQ (Q5HQB9) Bifunctional autolysin precursor [Includes:| N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28); Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)] Length = 1335 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -1 Query: 426 STEKYELLINYILVLTLFADDFRSEPTDICADLKMNRQMLKPYYDQ 289 ST+ NY V+ F +PT K NR LKPYY+Q Sbjct: 1019 STDAQSTPYNYTFVINNSKSYFYMDPT------KANRYSLKPYYEQ 1058
>ATL_STAEP (O33635) Bifunctional autolysin precursor (AtlE) [Includes:| N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28); Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)] Length = 1335 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -1 Query: 426 STEKYELLINYILVLTLFADDFRSEPTDICADLKMNRQMLKPYYDQ 289 ST+ NY V+ F +PT K NR LKPYY+Q Sbjct: 1019 STDAQSTPYNYTFVINNSKSYFYMDPT------KANRYSLKPYYEQ 1058
>TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP-12)| Length = 534 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = +2 Query: 251 GLKAPVDTDLHPSWS 295 GLK P DLHPSWS Sbjct: 482 GLKEPESEDLHPSWS 496
>HEMA_IADA4 (P26562) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 566 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -3 Query: 127 KLCALSSVSPLLLGNCYKRGTIL 59 KLC+L+ ++PL LG C G +L Sbjct: 57 KLCSLNGIAPLQLGKCNVAGWLL 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,615,258 Number of Sequences: 219361 Number of extensions: 1285901 Number of successful extensions: 2934 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2932 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
