ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54b06 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 174 bits (441), Expect = 1e-43 Identities = 92/106 (86%), Positives = 98/106 (92%), Gaps = 1/106 (0%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 ASQIRQIRRKMVEIM NQA+SCDLKELV+KFIPEVIGKEIEKATSSIFPLQNV+VRKVKI Sbjct: 157 ASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKI 216 Query: 344 LKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 210 LKAPKFDLGKLMEVHGDY KED+G KLDRP DE + G +EVAAAE Sbjct: 217 LKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 159 bits (402), Expect = 4e-39 Identities = 81/104 (77%), Positives = 90/104 (86%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +SQI+QIRRKM EIMV QA +CDLKELV KFIPE IG+EIEKATSSI+PLQNV++RKVKI Sbjct: 157 SSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKI 216 Query: 344 LKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAAA 213 LKAPKFD+GKLMEVHGDY EDVGVKLDRP +E P A EV A Sbjct: 217 LKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 159 bits (401), Expect = 6e-39 Identities = 79/103 (76%), Positives = 88/103 (85%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +SQIRQIRRKM EIMVNQA SCDLK+LV KFIPE IG+EIEKATSSI+PLQNV++RKVKI Sbjct: 157 SSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKI 216 Query: 344 LKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAA 216 LKAPKFDLGKLMEVHGDY ED+G KLDRP + V E + A Sbjct: 217 LKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 150 bits (380), Expect = 2e-36 Identities = 76/105 (72%), Positives = 88/105 (83%), Gaps = 1/105 (0%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +SQIRQIRRKM EIMV +A+SCDLKELV KFIPE IG+EIEKAT I+PLQNV++RKVKI Sbjct: 157 SSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKI 216 Query: 344 LKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 213 LKAPKFDLGKLMEVHGDY EDVGVK+DRP + ++ E+ A Sbjct: 217 LKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 140 bits (354), Expect = 2e-33 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 2/106 (1%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQ-AASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 348 +SQIRQIR KM EIM+ + A+SCDLKELV KFIPE IGK+IEKAT I+PLQNV++RKVK Sbjct: 157 SSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVK 216 Query: 347 ILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 213 ILKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 217 ILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 117 bits (292), Expect = 3e-26 Identities = 62/87 (71%), Positives = 73/87 (83%), Gaps = 1/87 (1%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSS-IFPLQNVYVRKVK 348 +SQI IRRKM EIMV +A +CDLKELV KFIPEVIGKEI++ S I+PLQ+ ++RKVK Sbjct: 155 SSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVK 213 Query: 347 ILKAPKFDLGKLMEVHGDYKEDVGVKL 267 ILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 214 ILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 113 bits (283), Expect = 3e-25 Identities = 56/86 (65%), Positives = 71/86 (82%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +SQIR IR+KM +++ NQ +SC ++ELV K IPEVIG+EIE+AT SIFPLQNV VRKVKI Sbjct: 157 SSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKI 216 Query: 344 LKAPKFDLGKLMEVHGDYKEDVGVKL 267 LKAPK D KL+E+HG+ +DVG K+ Sbjct: 217 LKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 113 bits (283), Expect = 3e-25 Identities = 57/98 (58%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KMVEIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK Sbjct: 159 QVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 113 bits (282), Expect = 4e-25 Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 9/100 (9%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 112 bits (281), Expect = 5e-25 Identities = 56/100 (56%), Positives = 74/100 (74%), Gaps = 9/100 (9%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+PL +VYVRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (280), Expect = 6e-25 Identities = 56/98 (57%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 112 bits (279), Expect = 8e-25 Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 10/101 (9%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+PL +VYVRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 111 bits (278), Expect = 1e-24 Identities = 56/98 (57%), Positives = 73/98 (74%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK Sbjct: 159 QVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 111 bits (278), Expect = 1e-24 Identities = 56/98 (57%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 111 bits (277), Expect = 1e-24 Identities = 55/98 (56%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 111 bits (277), Expect = 1e-24 Identities = 55/98 (56%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 111 bits (277), Expect = 1e-24 Identities = 55/98 (56%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 111 bits (277), Expect = 1e-24 Identities = 55/98 (56%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK Sbjct: 156 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 215 Query: 338 APKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 KPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 110 bits (276), Expect = 2e-24 Identities = 55/98 (56%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 110 bits (276), Expect = 2e-24 Identities = 55/98 (56%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 110 bits (274), Expect = 3e-24 Identities = 54/98 (55%), Positives = 74/98 (75%), Gaps = 7/98 (7%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK++EKA SI+PL +V+VRKVK+LK Sbjct: 159 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLK 218 Query: 338 APKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 219 KPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 109 bits (272), Expect = 5e-24 Identities = 54/86 (62%), Positives = 70/86 (81%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +SQIR I +KM +++ NQA C +KELV K IPEVIG+ IEKAT++I+PLQNV+VRKVKI Sbjct: 157 SSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKI 216 Query: 344 LKAPKFDLGKLMEVHGDYKEDVGVKL 267 LKAPK D KL+E+HG+ +DVG K+ Sbjct: 217 LKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 101 bits (251), Expect = 1e-21 Identities = 50/100 (50%), Positives = 71/100 (71%), Gaps = 8/100 (8%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 +Q++ IR+KMVEI+ + +S D+KE+VNK IP+ IGK+IEK+ I+PL +V + KVK+L Sbjct: 158 AQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVL 217 Query: 341 KAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 246 K PKFD+GKLME+HG+ + G K+DR DG E Sbjct: 218 KKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYE 257
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 100 bits (249), Expect = 2e-21 Identities = 48/96 (50%), Positives = 72/96 (75%), Gaps = 1/96 (1%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +S++R+ R+KM+EI+ + ++C L +L +K IPEVIG+EIEK+T +IFPLQNV++RKVK+ Sbjct: 157 SSKLREARKKMIEIIEREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKL 216 Query: 344 LKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDGDEVI 240 LK PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 217 LKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 98.6 bits (244), Expect = 9e-21 Identities = 49/94 (52%), Positives = 67/94 (71%), Gaps = 2/94 (2%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 S+IR+IR +M+ + + CDLKE+V+K IP+ IGK+IEK S ++PLQ VY+RKVKI+ Sbjct: 156 SKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKII 215 Query: 341 KAPKFDLGKLMEVHGD--YKEDVGVKLDRPDGDE 246 K PK DLG+L ++HGD G K+DRPD E Sbjct: 216 KRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 95.9 bits (237), Expect = 6e-20 Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 8/100 (8%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ+R+IR +M +I+ N+ + DLK+LVNK + I K+IEK+ I+PL +VY+RKVK+L Sbjct: 161 SQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVL 220 Query: 341 KAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 246 K P+FD+ KL+E+HGD G +DRP+G E Sbjct: 221 KKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 90.9 bits (224), Expect = 2e-18 Identities = 43/77 (55%), Positives = 57/77 (74%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +S IR IR+ + EI+ + + L +L +K IPEVI KEIE AT IFPLQN++VRKVK+ Sbjct: 157 SSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKL 216 Query: 344 LKAPKFDLGKLMEVHGD 294 LK PKFD+G LM +HG+ Sbjct: 217 LKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 90.5 bits (223), Expect = 3e-18 Identities = 43/77 (55%), Positives = 56/77 (72%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +S IR IR+ + EI+ + L +L +K IPEVI KEIE AT IFPLQN++VRKVK+ Sbjct: 157 SSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKL 216 Query: 344 LKAPKFDLGKLMEVHGD 294 LK PKFD+G LM +HG+ Sbjct: 217 LKQPKFDVGALMALHGE 233
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 89.0 bits (219), Expect = 7e-18 Identities = 41/76 (53%), Positives = 55/76 (72%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQI+ IR KM I+ + S DLK +V K +P+ I K+IEKA ++PL +VY+RKVK+L Sbjct: 161 SQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVL 220 Query: 341 KAPKFDLGKLMEVHGD 294 K P+FDL LME+HGD Sbjct: 221 KKPRFDLSSLMELHGD 236
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 45.4 bits (106), Expect = 9e-05 Identities = 23/64 (35%), Positives = 37/64 (57%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K+L Sbjct: 132 SQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVL 191 Query: 341 KAPK 330 + P+ Sbjct: 192 EEPQ 195
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K+L Sbjct: 133 SQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIKVL 192 Query: 341 KAPK 330 P+ Sbjct: 193 GEPE 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K+L Sbjct: 134 SQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIKVL 193 Query: 341 KAPK 330 P+ Sbjct: 194 GEPE 197
>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae| Length = 211 Score = 42.4 bits (98), Expect = 8e-04 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIP----EVIGKEIEKATSSIFPLQNVYVRK 354 SQ R IR++M +++ A CD E + + + E I ++I++A I+P++ +RK Sbjct: 125 SQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEIRK 184 Query: 353 VKILKAP 333 ++L+ P Sbjct: 185 TEVLEEP 191
>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae| Length = 211 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/63 (31%), Positives = 37/63 (58%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ R IR M +I+V +A+S + + + + + + EI K I+P++ V +RK+++L Sbjct: 135 SQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIELL 194 Query: 341 KAP 333 P Sbjct: 195 AEP 197
>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae| Length = 221 Score = 39.3 bits (90), Expect = 0.007 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 +Q +R+KM+E +V +AA D + + + + + ++ I P++ V + K+K+L Sbjct: 141 AQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVL 200 Query: 341 KAP 333 K P Sbjct: 201 KYP 203
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 38.9 bits (89), Expect = 0.009 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ R IR+ + +I+ +A + + V + + I EI K I+P++ VRK+K+L Sbjct: 136 SQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIKVL 195 Query: 341 KAP 333 P Sbjct: 196 AEP 198
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ IR+ + +I +A D + V I + +I + I+PL+ V + K K+L Sbjct: 133 SQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLL 192 Query: 341 KAPK 330 KAPK Sbjct: 193 KAPK 196
>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae| Length = 203 Score = 38.1 bits (87), Expect = 0.015 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +SQ++ IR MVEI+ +AA D + + + I + I + I+PL+ V +RK ++ Sbjct: 131 SSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTEV 190 Query: 344 LKAP 333 P Sbjct: 191 ETIP 194
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 37.4 bits (85), Expect = 0.025 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ +IR+ + I+ +A+ E V + + +I + I+PL+ V V K K+L Sbjct: 130 SQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLL 189 Query: 341 KAP 333 KAP Sbjct: 190 KAP 192
>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae| Length = 215 Score = 37.0 bits (84), Expect = 0.033 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = -2 Query: 509 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 330 QIR+ + + ++N+ S E V I + I ++ AT I+PL+ + VRK +++ Sbjct: 137 QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMISATKDIYPLKKIEVRKSELV---- 192 Query: 329 FDLGKLMEVH 300 L + E+H Sbjct: 193 -SLSGISEIH 201
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 37.0 bits (84), Expect = 0.033 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = -2 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 342 SQ IR+ + E + +A+ + + + + EI +A I+PL+ + K K+L Sbjct: 131 SQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVL 190 Query: 341 KAPKFDLGKLME 306 K P+ +LGK +E Sbjct: 191 KVPE-NLGKQVE 201
>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae| Length = 204 Score = 35.8 bits (81), Expect = 0.073 Identities = 18/64 (28%), Positives = 35/64 (54%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +SQ++ IR MV+I+ +A+ D + + + I + I + I+PL+ V +RK ++ Sbjct: 131 SSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQV 190 Query: 344 LKAP 333 P Sbjct: 191 EAMP 194
>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae| Length = 213 Score = 34.3 bits (77), Expect = 0.21 Identities = 23/92 (25%), Positives = 43/92 (46%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 ASQ + IRR M++++ A ++L++ + + I I+PL+ V ++K + Sbjct: 128 ASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKTTL 187 Query: 344 LKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGD 249 P+ EV + E+ V +D D D Sbjct: 188 EARPE-------EVAAE--EETAVDVDEEDVD 210
>RS3A_METTH (O27630) 30S ribosomal protein S3Ae| Length = 195 Score = 32.3 bits (72), Expect = 0.81 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 +SQ + +R+ + E + A+ +ELV + I EI I+PL+ V + K ++ Sbjct: 131 SSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSRV 190 Query: 344 LKAP 333 L+ P Sbjct: 191 LEEP 194
>RS3A_METJA (P54059) 30S ribosomal protein S3Ae| Length = 222 Score = 32.3 bits (72), Expect = 0.81 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -2 Query: 518 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 339 Q IR+KM EI+ A + V + + ++I+ IFP++NV + K ++L Sbjct: 140 QKSDIRKKMEEIIKAMAKEKTFPQYVQAMLFGEMAEKIKNECKKIFPIKNVIIYKSEVLS 199 Query: 338 APK 330 K Sbjct: 200 LAK 202
>RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae| Length = 215 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/97 (20%), Positives = 43/97 (44%) Frame = -2 Query: 509 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 330 +IR+ + +V++ + + V I + ++ +AT +I+PL+ + +RK Sbjct: 137 EIRKALTSFIVSKGSQLSYADFVRYLIGDDSYNDMVEATKNIYPLRKIEIRK-------- 188 Query: 329 FDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVA 219 +L+ + G + P +E PG E +A Sbjct: 189 ---SELVSLSG---------MQEPQKNEPAPGGEAIA 213
>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae| Length = 209 Score = 30.4 bits (67), Expect = 3.1 Identities = 13/61 (21%), Positives = 32/61 (52%) Frame = -2 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 345 A++ ++R K++ + + S L EL I + + +I ++P++ + +RK ++ Sbjct: 131 ANKRGEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEV 190 Query: 344 L 342 L Sbjct: 191 L 191
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -2 Query: 422 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 246 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 245 VIPGAEEV 222 + PG ++ Sbjct: 847 LPPGVNQL 854
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -2 Query: 422 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 246 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 245 VIPGAEEV 222 + PG ++ Sbjct: 867 LPPGVNQL 874
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase| Length = 483 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Frame = -2 Query: 416 GKEIEKATSSIFPLQNVYVRKVKILKAPKFDL---------GKLMEVHGDYKEDVGVKLD 264 G++I+KA I P + LK+ +D GK+M + G Y+ +G +D Sbjct: 286 GEKIDKADLIILPGTKSVRDDLAYLKSQGWDKDILRHIRLGGKVMGICGGYQM-LGKTID 344 Query: 263 RPDGDEVIPGAEE 225 PDG E PG+ E Sbjct: 345 DPDGVEGEPGSSE 357
>OAS3_HUMAN (Q9Y6K5) 2'-5'-oligoadenylate synthetase 3 (EC 2.7.7.-)| ((2-5')oligo(A) synthetase 3) (2-5A synthetase 3) (p100 OAS) (p100OAS) Length = 1087 Score = 28.9 bits (63), Expect = 9.0 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +3 Query: 237 RNDLISIRPVKLHTNILLVVTVHLHELSQVKLRGLQDLHLADVHVLE 377 R + ++IRP KL ILLV H QV L+GL L V+ LE Sbjct: 188 RRNFVNIRPAKLKNLILLV----KHWYHQVCLQGLWKETLPPVYALE 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,540,952 Number of Sequences: 219361 Number of extensions: 1061760 Number of successful extensions: 2823 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 2741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2818 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
