>VP5_WTV (P12366) Outer coat protein P5|
          Length = 804

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 237 RTSWKYINDNYAFCRRTLQG-ANEVISTCSFS 329
           +TSW+Y+ D   F R  L G A+ ++  CSF+
Sbjct: 170 KTSWRYVIDYSMFTRSALVGFASHMMDECSFA 201

>Y994_METTH (O27075) Hypothetical protein MTH994|
          Length = 384

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 193 GNIHDDGTNIVREQCVRAGNT*MIIMLSADEHYRVQTRSYQHAPLAE 333
           G I D+  +I+ E+C RAG    I  +   EH   Q RS +   ++E
Sbjct: 183 GEITDETASIIVEECERAGK---IASIHVAEHRESQRRSLEDTGMSE 226

>GNRHR_TRIVU (Q9TTI8) Gonadotropin-releasing hormone receptor (GnRH receptor)|
           (GnRH-R)
          Length = 328

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 193 RPIYISSNKPFGYSSFSDSWFTSVLMIGFYLQI 95
           RP+ + SN   G S  + +WF S+++ G  L I
Sbjct: 145 RPLAVKSNTKVGQSLIAVAWFLSIVLAGPQLYI 177

>YA71_SCHPO (Q09758) Hypothetical protein C24H6.01c in chromosome I|
          Length = 588

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 273 KHNYHLCISSSYALLTHNICSIIMYITVPFISQAIS 166
           K+NY LC S  +ALL +    +I  +T+  I+  IS
Sbjct: 151 KNNYRLCFSLLFALLVYG-TGVIYVLTIALINYLIS 185

>RPOA_LDVP (Q83017) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP1
          Length = 3616

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
 Frame = -2

Query: 306  PRLHPVVFVGRKHNYHLCIS----SSYALLTHNICSIIMYITVPFISQAISPLGIQALAT 139
            P  +PVV  G   N HLCIS    +S  +L++++    + I V      I+ + I  +A 
Sbjct: 1327 PFSYPVVGQGVMCNSHLCISEDGLTSPMVLSYSLIDWALMIAV------IATVAI-FIAK 1379

Query: 138  LGLLVS***VFICKFRIII--LSRFVF*FPRVL 46
            + LLV    VF+C    +   LS   F FP  L
Sbjct: 1380 VSLLVDVICVFLCLLMYVFPPLSVIAFAFPFAL 1412

>Y566_STAAM (Q99W43) UPF0343 protein SAV0566|
          Length = 292

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 190 DGNIHDDGTNIVREQCVRAGNT*MIIMLSADEHYRVQTRSYQHAPLAEDMAAIILIELL 366
           D NI DD  N + +      ++ +  +L   +  RV  R+Y++    ED+  +I  +L+
Sbjct: 203 DQNIVDDYKNKILDAMEANASSILYPILKRPDEKRVTERAYENPRFVEDLIRLIAADLV 261

>Y524_STAAN (Q7A777) UPF0343 protein SA0524|
          Length = 292

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 190 DGNIHDDGTNIVREQCVRAGNT*MIIMLSADEHYRVQTRSYQHAPLAEDMAAIILIELL 366
           D NI DD  N + +      ++ +  +L   +  RV  R+Y++    ED+  +I  +L+
Sbjct: 203 DQNIVDDYKNKILDAMEANASSILYPILKRPDEKRVTERAYENPRFVEDLIRLIAADLV 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,430,693
Number of Sequences: 219361
Number of extensions: 983739
Number of successful extensions: 2099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2099
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)