Clone Name | rbart54a11 |
---|---|
Clone Library Name | barley_pub |
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein Length = 1110 Score = 85.7 bits (43), Expect = 1e-14 Identities = 46/47 (97%) Strand = Plus / Minus Query: 8 ccactactaatcaagaatgaaattaatcaaatcctggacagccacta 54 |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 961 ccactactaatcaagaatcaaattaatcaaatcctggacagccacta 915
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence Length = 124511 Score = 42.1 bits (21), Expect = 0.20 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 agaatgaaattaatcaaatcc 41 ||||||||||||||||||||| Sbjct: 92295 agaatgaaattaatcaaatcc 92315
>emb|AL954345.11| Mouse DNA sequence from clone RP23-79N6 on chromosome X, complete sequence Length = 79546 Score = 40.1 bits (20), Expect = 0.79 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 aatcaagaatgaaattaatcaaat 39 ||||||||||||||||||| |||| Sbjct: 66651 aatcaagaatgaaattaataaaat 66674
>ref|XM_516565.1| PREDICTED: Pan troglodytes similar to Ca2+-dependent secretion activator isoform 3; Ca2+-regulated cytoskeletal protein; Ca2+-dependent activator protein for secretion (LOC460485), mRNA Length = 4869 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 taatcaagaatgaaattaa 33 ||||||||||||||||||| Sbjct: 14 taatcaagaatgaaattaa 32
>gb|AC183322.1| Ornithorhynchus anatinus BAC clone OABb-167O13 from chromosome unknown, complete sequence Length = 141935 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 caaatcctggacagccact 53 ||||||||||||||||||| Sbjct: 34226 caaatcctggacagccact 34244
>gb|AC183321.1| Ornithorhynchus anatinus BAC clone OABb-153H21 from chromosome unknown, complete sequence Length = 161060 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 caaatcctggacagccact 53 ||||||||||||||||||| Sbjct: 159721 caaatcctggacagccact 159739
>emb|AL121996.15|HSG118G19 Human DNA sequence from clone GS1-118G19 on chromosome 1q25.1-31.1 Contains the 5' end of the gene for hemicentin, complete sequence Length = 87461 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 actactaatcaagaatgaa 28 ||||||||||||||||||| Sbjct: 54937 actactaatcaagaatgaa 54919
>gb|AC161424.3| Mus musculus BAC clone RP23-252J6 from chromosome 9, complete sequence Length = 244497 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 aatcaagaatgaaattaat 34 ||||||||||||||||||| Sbjct: 49292 aatcaagaatgaaattaat 49310
>gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, complete sequence Length = 170219 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 taatcaagaatgaaattaa 33 ||||||||||||||||||| Sbjct: 107579 taatcaagaatgaaattaa 107561
>gb|AC114942.2| Homo sapiens chromosome 5 clone CTD-2327J4, complete sequence Length = 118067 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 taatcaagaatgaaattaa 33 ||||||||||||||||||| Sbjct: 26 taatcaagaatgaaattaa 8
>gb|AC093115.2| Homo sapiens chromosome 3 clone RP11-360G1, complete sequence Length = 173493 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 taatcaagaatgaaattaa 33 ||||||||||||||||||| Sbjct: 65764 taatcaagaatgaaattaa 65746
>gb|AC126267.3| Mus musculus BAC clone RP23-191M12 from chromosome 9, complete sequence Length = 218974 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 aatcaagaatgaaattaat 34 ||||||||||||||||||| Sbjct: 213735 aatcaagaatgaaattaat 213753
>gb|AC141872.8| Mus musculus BAC clone RP24-342D9 from chromosome 9, complete sequence Length = 161523 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 aatcaagaatgaaattaat 34 ||||||||||||||||||| Sbjct: 89602 aatcaagaatgaaattaat 89620
>gb|AC023275.3|AC023275 Homo sapiens BAC clone RP11-375L10 from 1, complete sequence Length = 180248 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 actactaatcaagaatgaa 28 ||||||||||||||||||| Sbjct: 104041 actactaatcaagaatgaa 104059
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 aatcaagaatgaaattaat 34 ||||||||||||||||||| Sbjct: 2830221 aatcaagaatgaaattaat 2830203
>gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184447 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 taatcaagaatgaaattaa 33 ||||||||||||||||||| Sbjct: 65756 taatcaagaatgaaattaa 65738
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1364A02 Length = 137933 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 aatcaagaatgaaattaat 34 ||||||||||||||||||| Sbjct: 133782 aatcaagaatgaaattaat 133764
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 aatcaagaatgaaattaat 34 ||||||||||||||||||| Sbjct: 508 aatcaagaatgaaattaat 490 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 619,482 Number of Sequences: 3902068 Number of extensions: 619482 Number of successful extensions: 48478 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48433 Number of HSP's gapped (non-prelim): 45 length of query: 77 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 56 effective length of database: 17,151,101,840 effective search space: 960461703040 effective search space used: 960461703040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)