ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransgl... 86 1e-14
2gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F1... 42 0.20
3emb|AL954345.11| Mouse DNA sequence from clone RP23-79N6 on chro... 40 0.79
4ref|XM_516565.1| PREDICTED: Pan troglodytes similar to Ca2+-depe... 38 3.1
5gb|AC183322.1| Ornithorhynchus anatinus BAC clone OABb-167O13 fr... 38 3.1
6gb|AC183321.1| Ornithorhynchus anatinus BAC clone OABb-153H21 fr... 38 3.1
7emb|AL121996.15|HSG118G19 Human DNA sequence from clone GS1-118G... 38 3.1
8gb|AC161424.3| Mus musculus BAC clone RP23-252J6 from chromosome... 38 3.1
9gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, comp... 38 3.1
10gb|AC114942.2| Homo sapiens chromosome 5 clone CTD-2327J4, compl... 38 3.1
11gb|AC093115.2| Homo sapiens chromosome 3 clone RP11-360G1, compl... 38 3.1
12gb|AC126267.3| Mus musculus BAC clone RP23-191M12 from chromosom... 38 3.1
13gb|AC141872.8| Mus musculus BAC clone RP24-342D9 from chromosome... 38 3.1
14gb|AC023275.3|AC023275 Homo sapiens BAC clone RP11-375L10 from 1... 38 3.1
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.1
16gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell P... 38 3.1
17dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 38 3.1
18dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 38 3.1

>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
          Length = 1110

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 46/47 (97%)
 Strand = Plus / Minus

                                                          
Query: 8   ccactactaatcaagaatgaaattaatcaaatcctggacagccacta 54
           |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 961 ccactactaatcaagaatcaaattaatcaaatcctggacagccacta 915



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>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete
             sequence
          Length = 124511

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    agaatgaaattaatcaaatcc 41
             |||||||||||||||||||||
Sbjct: 92295 agaatgaaattaatcaaatcc 92315



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>emb|AL954345.11| Mouse DNA sequence from clone RP23-79N6 on chromosome X, complete
             sequence
          Length = 79546

 Score = 40.1 bits (20), Expect = 0.79
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    aatcaagaatgaaattaatcaaat 39
             ||||||||||||||||||| ||||
Sbjct: 66651 aatcaagaatgaaattaataaaat 66674



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>ref|XM_516565.1| PREDICTED: Pan troglodytes similar to Ca2+-dependent secretion
          activator isoform 3; Ca2+-regulated cytoskeletal
          protein; Ca2+-dependent activator protein for secretion
          (LOC460485), mRNA
          Length = 4869

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 15 taatcaagaatgaaattaa 33
          |||||||||||||||||||
Sbjct: 14 taatcaagaatgaaattaa 32



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>gb|AC183322.1| Ornithorhynchus anatinus BAC clone OABb-167O13 from chromosome unknown,
             complete sequence
          Length = 141935

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    caaatcctggacagccact 53
             |||||||||||||||||||
Sbjct: 34226 caaatcctggacagccact 34244



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>gb|AC183321.1| Ornithorhynchus anatinus BAC clone OABb-153H21 from chromosome unknown,
              complete sequence
          Length = 161060

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     caaatcctggacagccact 53
              |||||||||||||||||||
Sbjct: 159721 caaatcctggacagccact 159739



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>emb|AL121996.15|HSG118G19 Human DNA sequence from clone GS1-118G19 on chromosome 1q25.1-31.1
             Contains the 5' end of the gene for hemicentin, complete
             sequence
          Length = 87461

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    actactaatcaagaatgaa 28
             |||||||||||||||||||
Sbjct: 54937 actactaatcaagaatgaa 54919



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>gb|AC161424.3| Mus musculus BAC clone RP23-252J6 from chromosome 9, complete sequence
          Length = 244497

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    aatcaagaatgaaattaat 34
             |||||||||||||||||||
Sbjct: 49292 aatcaagaatgaaattaat 49310



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>gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, complete sequence
          Length = 170219

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     taatcaagaatgaaattaa 33
              |||||||||||||||||||
Sbjct: 107579 taatcaagaatgaaattaa 107561



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>gb|AC114942.2| Homo sapiens chromosome 5 clone CTD-2327J4, complete sequence
          Length = 118067

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 15 taatcaagaatgaaattaa 33
          |||||||||||||||||||
Sbjct: 26 taatcaagaatgaaattaa 8



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>gb|AC093115.2| Homo sapiens chromosome 3 clone RP11-360G1, complete sequence
          Length = 173493

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    taatcaagaatgaaattaa 33
             |||||||||||||||||||
Sbjct: 65764 taatcaagaatgaaattaa 65746



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>gb|AC126267.3| Mus musculus BAC clone RP23-191M12 from chromosome 9, complete sequence
          Length = 218974

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     aatcaagaatgaaattaat 34
              |||||||||||||||||||
Sbjct: 213735 aatcaagaatgaaattaat 213753



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>gb|AC141872.8| Mus musculus BAC clone RP24-342D9 from chromosome 9, complete sequence
          Length = 161523

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    aatcaagaatgaaattaat 34
             |||||||||||||||||||
Sbjct: 89602 aatcaagaatgaaattaat 89620



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>gb|AC023275.3|AC023275 Homo sapiens BAC clone RP11-375L10 from 1, complete sequence
          Length = 180248

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     actactaatcaagaatgaa 28
              |||||||||||||||||||
Sbjct: 104041 actactaatcaagaatgaa 104059



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 16      aatcaagaatgaaattaat 34
               |||||||||||||||||||
Sbjct: 2830221 aatcaagaatgaaattaat 2830203



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>gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184447

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    taatcaagaatgaaattaa 33
             |||||||||||||||||||
Sbjct: 65756 taatcaagaatgaaattaa 65738



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>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1364A02
          Length = 137933

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     aatcaagaatgaaattaat 34
              |||||||||||||||||||
Sbjct: 133782 aatcaagaatgaaattaat 133764



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>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           BAC clone:OSJNBb0050B07
          Length = 142134

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 16  aatcaagaatgaaattaat 34
           |||||||||||||||||||
Sbjct: 508 aatcaagaatgaaattaat 490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 619,482
Number of Sequences: 3902068
Number of extensions: 619482
Number of successful extensions: 48478
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48433
Number of HSP's gapped (non-prelim): 45
length of query: 77
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 56
effective length of database: 17,151,101,840
effective search space: 960461703040
effective search space used: 960461703040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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