ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom... 62 1e-07
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 1e-07
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-07
4dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-07
5dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-07
6gb|AY108935.1| Zea mays PCO091688 mRNA sequence 56 6e-06
7gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold 42 0.097
8gb|AC026398.5| Homo sapiens chromosome 5 clone CTB-127M13, compl... 42 0.097
9emb|AL589703.6| Human DNA sequence from clone RP11-127L21 on chr... 40 0.38
10gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, comp... 40 0.38
11gb|AC016343.5| Homo sapiens chromosome 15, clone RP11-142M4, com... 40 0.38
12gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, com... 40 0.38
13gb|AY177270.1| Squalus acanthias NPY receptor Y4 gene, complete cds 38 1.5
14emb|BX510944.11| Zebrafish DNA sequence from clone DKEY-286H17 i... 38 1.5
15gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, co... 36 6.0
16ref|XM_616682.2| PREDICTED: Bos taurus similar to KPL2 protein i... 36 6.0
17gb|AC113277.8| Mus musculus chromosome 3, clone RP23-386C15, com... 36 6.0
18gb|AC124388.4| Mus musculus BAC clone RP24-426O7 from chromosome... 36 6.0
19emb|Z67882.1|CEF22E10 Caenorhabditis elegans Cosmid F22E10, comp... 36 6.0
20gb|AC034195.7| Homo sapiens chromosome 3 clone RP11-673F20 map 3... 36 6.0
21gb|AC011296.3| Homo sapiens BAC clone RP11-96K1 from 7, complete... 36 6.0
22emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on ch... 36 6.0
23emb|AL512627.6| Human DNA sequence from clone RP11-21A16 on chro... 36 6.0
24emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chro... 36 6.0
25emb|AL390037.16| Human DNA sequence from clone RP5-851M4 on chro... 36 6.0
26emb|AL356307.10| Human DNA sequence from clone RP11-393M20 on ch... 36 6.0
27emb|AL050305.9|HSDA60B16 Human DNA sequence from clone RP6-60B16... 36 6.0
28emb|AL031073.1|HS142F18 Human DNA sequence from clone RP1-142F18... 36 6.0
29emb|AL008987.1|HS849L7 Human DNA sequence from clone RP5-849L7 o... 36 6.0
30gb|AC092695.8| Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cance... 36 6.0
31gb|AC121160.3| Homo sapiens BAC clone RP11-730F8 from 4, complet... 36 6.0
32gb|DQ119847.1| Sus scrofa KPL2 (KPL2) mRNA, complete cds 36 6.0
33gb|AC078788.8| Homo sapiens 3 BAC RP11-292E2 (Roswell Park Cance... 36 6.0
34gb|U97401.1| Caenorhabditis elegans cosmid F21A9, complete sequence 36 6.0
35gb|AC125287.1| Homo sapiens chromosome 4 clone RP11-730F8, compl... 36 6.0
36gb|AC063977.6| Homo sapiens chromosome 19 clone CTD-3187F8, comp... 36 6.0
37gb|AC108082.3| Homo sapiens chromosome 5 clone CTD-2011G17, comp... 36 6.0
38gb|AC104985.3| Homo sapiens chromosome 18, clone RP11-379L18, co... 36 6.0
39gb|AC074044.8| Homo sapiens 3q BAC RP11-484K9 (Roswell Park Canc... 36 6.0
40gb|AC093898.3| Homo sapiens BAC clone RP11-724A24 from 4, comple... 36 6.0
41gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, co... 36 6.0
42gb|AC099788.2| Homo sapiens chromosome 1 clone RP11-97B14, compl... 36 6.0
43gb|AC099486.2| Homo sapiens chromosome 5 clone CTD-2011G10, comp... 36 6.0
44gb|AC092264.2| Homo sapiens chromosome 1 clone RP4-640P3, comple... 36 6.0
45gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3... 36 6.0
46ref|NM_058803.1| Caenorhabditis elegans F21A9.2 (F21A9.2) mRNA, ... 36 6.0
47emb|BX324224.11| Zebrafish DNA sequence from clone CH211-168H21 ... 36 6.0
48dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.0
49gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, comple... 36 6.0
50gb|AC092632.2| Homo sapiens BAC clone RP11-337B18 from 2, comple... 36 6.0
51gb|AC023478.5|AC023478 Homo sapiens chromosome 3 clone RP11-360E... 36 6.0
52gb|AC074019.7| Homo sapiens BAC clone RP11-271M11 from 2, comple... 36 6.0
53gb|AC027663.14|AC027663 Homo sapiens chromosome 1 clone RP11-285... 36 6.0
54dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic D... 36 6.0
55dbj|AP003500.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 36 6.0
56emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on ch... 36 6.0
57gb|AC140327.3| Mus musculus BAC clone RP24-325P20 from 6, comple... 36 6.0
58gb|AC134542.3| Mus musculus BAC clone RP24-441E15 from 6, comple... 36 6.0
59dbj|AP003782.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 36 6.0 
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
             sequence
          Length = 154558

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                            
Query: 1     tctgtacgttttccacgtcgagctttttgaagttgctgttcttcctg 47
             |||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 94443 tctggacgttctccacgtccagcttcttgaagttgctgttcttcctg 94489
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 1        tctgtacgttttccacgtcgagctttttgaagttgctgttcttcctg 47
                |||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 23257962 tctggacgttctccacgtccagcttcttgaagttgctgttcttcctg 23258008
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 1        tctgtacgttttccacgtcgagctttttgaagttgctgttcttcctg 47
                |||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 23250990 tctggacgttctccacgtccagcttcttgaagttgctgttcttcctg 23251036
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>dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026A10, full
            insert sequence
          Length = 1337

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 1    tctgtacgttttccacgtcgagctttttgaagttgctgttcttcctg 47
            |||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 1102 tctggacgttctccacgtccagcttcttgaagttgctgttcttcctg 1056
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>dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B03, full
            insert sequence
          Length = 1449

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 1    tctgtacgttttccacgtcgagctttttgaagttgctgttcttcctg 47
            |||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 1208 tctggacgttctccacgtccagcttcttgaagttgctgttcttcctg 1162
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>gb|AY108935.1| Zea mays PCO091688 mRNA sequence
          Length = 1084

 Score = 56.0 bits (28), Expect = 6e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 12  tccacgtcgagctttttgaagttgctgttcttcctg 47
           ||||||| |||||| |||||||||||||||||||||
Sbjct: 805 tccacgttgagcttcttgaagttgctgttcttcctg 770
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>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold
          Length = 489372

 Score = 42.1 bits (21), Expect = 0.097
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     tttttgaagttgctgttcttc 44
              |||||||||||||||||||||
Sbjct: 461046 tttttgaagttgctgttcttc 461026
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>gb|AC026398.5| Homo sapiens chromosome 5 clone CTB-127M13, complete sequence
          Length = 88783

 Score = 42.1 bits (21), Expect = 0.097
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    tttttgaagttgctgttcttc 44
             |||||||||||||||||||||
Sbjct: 44642 tttttgaagttgctgttcttc 44662
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>emb|AL589703.6| Human DNA sequence from clone RP11-127L21 on chromosome 9 Contains a
            novel gene and a pseudogene similar to part of tubulin
            beta chain, complete sequence
          Length = 48697

 Score = 40.1 bits (20), Expect = 0.38
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 26   tttgaagttgctgttcttcc 45
            ||||||||||||||||||||
Sbjct: 3732 tttgaagttgctgttcttcc 3751
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>gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, complete sequence
          Length = 158556

 Score = 40.1 bits (20), Expect = 0.38
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    tttttgaagttgctgttctt 43
             ||||||||||||||||||||
Sbjct: 91702 tttttgaagttgctgttctt 91683
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>gb|AC016343.5| Homo sapiens chromosome 15, clone RP11-142M4, complete sequence
          Length = 177386

 Score = 40.1 bits (20), Expect = 0.38
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    tttttgaagttgctgttctt 43
             ||||||||||||||||||||
Sbjct: 29399 tttttgaagttgctgttctt 29418
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>gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, complete sequence
          Length = 158682

 Score = 40.1 bits (20), Expect = 0.38
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttttgaagttgctgttctt 43
              ||||||||||||||||||||
Sbjct: 134423 tttttgaagttgctgttctt 134442
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>gb|AY177270.1| Squalus acanthias NPY receptor Y4 gene, complete cds
          Length = 1116

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 23  ctttttgaagttgctgttc 41
           |||||||||||||||||||
Sbjct: 984 ctttttgaagttgctgttc 966
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>emb|BX510944.11| Zebrafish DNA sequence from clone DKEY-286H17 in linkage group 14,
             complete sequence
          Length = 131659

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    ttttgaagttgctgttctt 43
             |||||||||||||||||||
Sbjct: 47808 ttttgaagttgctgttctt 47790
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>gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, complete sequence
          Length = 157225

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    ttgaagttgctgttcttc 44
             ||||||||||||||||||
Sbjct: 57661 ttgaagttgctgttcttc 57644
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>ref|XM_616682.2| PREDICTED: Bos taurus similar to KPL2 protein isoform 1 (LOC536549),
            partial mRNA
          Length = 1514

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 27   ttgaagttgctgttcttc 44
            ||||||||||||||||||
Sbjct: 1351 ttgaagttgctgttcttc 1368
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>gb|AC113277.8| Mus musculus chromosome 3, clone RP23-386C15, complete sequence
          Length = 210390

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    ttttgaagttgctgttct 42
             ||||||||||||||||||
Sbjct: 95382 ttttgaagttgctgttct 95365
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>gb|AC124388.4| Mus musculus BAC clone RP24-426O7 from chromosome 13, complete sequence
          Length = 149152

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 129987 tttgaagttgctgttctt 129970
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>emb|Z67882.1|CEF22E10 Caenorhabditis elegans Cosmid F22E10, complete sequence
          Length = 37527

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 23    ctttttgaagttgctgttcttc 44
             |||||||||| |||||||||||
Sbjct: 10498 ctttttgaagctgctgttcttc 10519
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>gb|AC034195.7| Homo sapiens chromosome 3 clone RP11-673F20 map 3p, complete sequence
          Length = 189848

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 48727 tttgaagttgctgttctt 48744



 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 47999 tttgaagttgctgttctt 48016
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>gb|AC011296.3| Homo sapiens BAC clone RP11-96K1 from 7, complete sequence
          Length = 130513

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 62736 tttgaagttgctgttctt 62753
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>emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on chromosome Xq24-25
             Contains a ribosomal protein L3 (RPL3) pseudogene,
             complete sequence
          Length = 137154

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 40704 tttgaagttgctgttctt 40687
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>emb|AL512627.6| Human DNA sequence from clone RP11-21A16 on chromosome 10 Contains a
            CpG island, complete sequence
          Length = 27079

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   tttgaagttgctgttctt 43
            ||||||||||||||||||
Sbjct: 1920 tttgaagttgctgttctt 1903
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>emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chromosome 13, complete
              sequence
          Length = 165011

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 132282 tttgaagttgctgttctt 132265
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>emb|AL390037.16| Human DNA sequence from clone RP5-851M4 on chromosome 20 Contains ESTs,
             STSs and GSSs, complete sequence
          Length = 79531

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 28    tgaagttgctgttcttcc 45
             ||||||||||||||||||
Sbjct: 49487 tgaagttgctgttcttcc 49470
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>emb|AL356307.10| Human DNA sequence from clone RP11-393M20 on chromosome 10, complete
             sequence
          Length = 83539

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 83459 tttgaagttgctgttctt 83442
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>emb|AL050305.9|HSDA60B16 Human DNA sequence from clone RP6-60B16 on chromosome Xp11.21-22.2
             Contains the 5' end of one variant of the DMD gene for
             dystrophin (muscular dystrophy, Duchenne and Becker
             types), and a lysosomal-associated membrane protein 1
             (LAMP1) pseudogene, complete sequence
          Length = 139258

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 33592 tttgaagttgctgttctt 33575
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>emb|AL031073.1|HS142F18 Human DNA sequence from clone RP1-142F18 on chromosome Xq26.3-27.2
              Contains the MAGEE1 gene for melanoma antigen, family E 1,
              a  melanoma antigen, family E 1(MAGEE1) pseudogene, and a
              CpG island, complete sequence
          Length = 141672

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 136360 tttgaagttgctgttctt 136377
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>emb|AL008987.1|HS849L7 Human DNA sequence from clone RP5-849L7 on chromosome Xq21 Contains a
             dendritic cell protein (GA17) pseudogene, complete
             sequence
          Length = 128169

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 76273 tttgaagttgctgttctt 76290
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>gb|AC092695.8| Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166471

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 109212 tttgaagttgctgttctt 109195
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>gb|AC121160.3| Homo sapiens BAC clone RP11-730F8 from 4, complete sequence
          Length = 110227

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 107535 tttgaagttgctgttctt 107518
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>gb|DQ119847.1| Sus scrofa KPL2 (KPL2) mRNA, complete cds
          Length = 5439

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 27   ttgaagttgctgttcttc 44
            ||||||||||||||||||
Sbjct: 5276 ttgaagttgctgttcttc 5293
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>gb|AC078788.8| Homo sapiens 3 BAC RP11-292E2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166538

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 60890 tttgaagttgctgttctt 60907
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>gb|U97401.1| Caenorhabditis elegans cosmid F21A9, complete sequence
          Length = 13469

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 18   tcgagctttttgaagttg 35
            ||||||||||||||||||
Sbjct: 6819 tcgagctttttgaagttg 6836
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>gb|AC125287.1| Homo sapiens chromosome 4 clone RP11-730F8, complete sequence
          Length = 110227

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 107535 tttgaagttgctgttctt 107518
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>gb|AC063977.6| Homo sapiens chromosome 19 clone CTD-3187F8, complete sequence
          Length = 212752

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 15376 tttgaagttgctgttctt 15393
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>gb|AC108082.3| Homo sapiens chromosome 5 clone CTD-2011G17, complete sequence
          Length = 114475

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   tttgaagttgctgttctt 43
            ||||||||||||||||||
Sbjct: 8517 tttgaagttgctgttctt 8500
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>gb|AC104985.3| Homo sapiens chromosome 18, clone RP11-379L18, complete sequence
          Length = 172187

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 162682 tttgaagttgctgttctt 162699
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>gb|AC074044.8| Homo sapiens 3q BAC RP11-484K9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 194006

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 57687 tttgaagttgctgttctt 57704
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>gb|AC093898.3| Homo sapiens BAC clone RP11-724A24 from 4, complete sequence
          Length = 183273

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 99905 tttgaagttgctgttctt 99922
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>gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, complete sequence
          Length = 171501

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 32455 tttgaagttgctgttctt 32472
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>gb|AC099788.2| Homo sapiens chromosome 1 clone RP11-97B14, complete sequence
          Length = 148679

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 123615 tttgaagttgctgttctt 123598
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>gb|AC099486.2| Homo sapiens chromosome 5 clone CTD-2011G10, complete sequence
          Length = 112226

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 26  tttgaagttgctgttctt 43
           ||||||||||||||||||
Sbjct: 395 tttgaagttgctgttctt 412
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>gb|AC092264.2| Homo sapiens chromosome 1 clone RP4-640P3, complete sequence
          Length = 113330

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 14829 tttgaagttgctgttctt 14812
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>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence
          Length = 177721

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 36245 tttgaagttgctgttctt 36228



 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 35517 tttgaagttgctgttctt 35500
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>ref|NM_058803.1| Caenorhabditis elegans F21A9.2 (F21A9.2) mRNA, complete cds
          Length = 1119

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 18  tcgagctttttgaagttg 35
           ||||||||||||||||||
Sbjct: 745 tcgagctttttgaagttg 728
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>emb|BX324224.11| Zebrafish DNA sequence from clone CH211-168H21 in linkage group 13,
             complete sequence
          Length = 147168

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 22    gctttttgaagttgctgttctt 43
             ||||| ||||||||||||||||
Sbjct: 23083 gctttctgaagttgctgttctt 23104
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 20       gagctttttgaagttgct 37
                ||||||||||||||||||
Sbjct: 19699970 gagctttttgaagttgct 19699953
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>gb|AC124861.3| Homo sapiens BAC clone RP11-622A18 from 2, complete sequence
          Length = 153731

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 25728 tttgaagttgctgttctt 25711
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>gb|AC092632.2| Homo sapiens BAC clone RP11-337B18 from 2, complete sequence
          Length = 199385

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 22     gctttttgaagttgctgttctt 43
              ||||||||||||| ||||||||
Sbjct: 161190 gctttttgaagtttctgttctt 161211
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>gb|AC023478.5|AC023478 Homo sapiens chromosome 3 clone RP11-360E14 map 3p, complete sequence
          Length = 167881

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 141815 tttgaagttgctgttctt 141798



 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     tttgaagttgctgttctt 43
              ||||||||||||||||||
Sbjct: 141087 tttgaagttgctgttctt 141070
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>gb|AC074019.7| Homo sapiens BAC clone RP11-271M11 from 2, complete sequence
          Length = 127559

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 26   tttgaagttgctgttctt 43
            ||||||||||||||||||
Sbjct: 7325 tttgaagttgctgttctt 7342
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>gb|AC027663.14|AC027663 Homo sapiens chromosome 1 clone RP11-285I23, complete sequence
          Length = 170969

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    tttgaagttgctgttctt 43
             ||||||||||||||||||
Sbjct: 10972 tttgaagttgctgttctt 10955
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>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0001B21
          Length = 143722

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 20    gagctttttgaagttgct 37
             ||||||||||||||||||
Sbjct: 84426 gagctttttgaagttgct 84409
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>dbj|AP003500.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-237N19, complete
             sequence
          Length = 161078

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    ctttttgaagttgctgtt 40
             ||||||||||||||||||
Sbjct: 39529 ctttttgaagttgctgtt 39512
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>emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on chromosome 4, complete
              sequence
          Length = 224031

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     tttttgaagttgctgttc 41
              ||||||||||||||||||
Sbjct: 115519 tttttgaagttgctgttc 115502
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>gb|AC140327.3| Mus musculus BAC clone RP24-325P20 from 6, complete sequence
          Length = 154692

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 25     ttttgaagttgctgttct 42
              ||||||||||||||||||
Sbjct: 149402 ttttgaagttgctgttct 149419
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>gb|AC134542.3| Mus musculus BAC clone RP24-441E15 from 6, complete sequence
          Length = 175750

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     ttttgaagttgctgttct 42
              ||||||||||||||||||
Sbjct: 154968 ttttgaagttgctgttct 154951
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>dbj|AP003782.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-589G12, complete
              sequence
          Length = 180303

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ctttttgaagttgctgtt 40
              ||||||||||||||||||
Sbjct: 159660 ctttttgaagttgctgtt 159643


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 384,261
Number of Sequences: 3902068
Number of extensions: 384261
Number of successful extensions: 95520
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95353
Number of HSP's gapped (non-prelim): 167
length of query: 47
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 27
effective length of database: 17,155,003,908
effective search space: 463185105516
effective search space used: 463185105516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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