ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIA_HUMAN (Q9BZP6) Acidic mammalian chitinase precursor (EC 3.2... 28 4.6
2NUCM_TRYBB (P21301) NADH-ubiquinone oxidoreductase 49 kDa subuni... 28 6.0
3IL9R_HUMAN (Q01113) Interleukin-9 receptor precursor (IL-9R) (CD... 28 6.0

>CHIA_HUMAN (Q9BZP6) Acidic mammalian chitinase precursor (EC 3.2.1.14)|
           (AMCase) (TSA1902)
          Length = 476

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 187 SIYVVLCFSYNWSLFS*GLEGTMATNYAACLCVLACVGFVLR 62
           S Y + C+  NW+ +  GL   M  N   CLC      F  R
Sbjct: 20  SAYQLTCYFTNWAQYRPGLGRFMPDNIDPCLCTHLIYAFAGR 61



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>NUCM_TRYBB (P21301) NADH-ubiquinone oxidoreductase 49 kDa subunit homolog (EC|
           1.6.5.3) (NADH dehydrogenase subunit 7 homolog)
          Length = 386

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 191 HLHLCGIVLFVQLELVFVGTRGYHGYKLCCLFVCLGMCWICTALVCRHVHSMLCF 27
           +L L G+  F   +LVF    G        L   LGM W C    C  ++ M C+
Sbjct: 200 YLRLRGLSFFDLYDLVFNSLSGV-------LSRSLGMVWDCRLFSCYELYFMFCY 247



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>IL9R_HUMAN (Q01113) Interleukin-9 receptor precursor (IL-9R) (CD129 antigen)|
          Length = 522

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 169 CFSYNWSLFS*GLEGTMATNYAACLCVLACV 77
           C    W+L S  L   M T   AC+C+  CV
Sbjct: 6   CIWEGWTLESEALRRDMGTWLLACICICTCV 36


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,828,289
Number of Sequences: 219361
Number of extensions: 606235
Number of successful extensions: 1497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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