ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 1.3
2emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chr... 40 1.3
3emb|AL589737.11| Mouse DNA sequence from clone RP23-43L14 on chr... 40 1.3

>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of
              11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     aaaaccatccgcagcaaagt 87
              ||||||||||||||||||||
Sbjct: 428819 aaaaccatccgcagcaaagt 428800



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>emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chromosome 13 Contains an
              ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G
              variant 1 (ATP6V1G1) pseudogene, complete sequence
          Length = 192963

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     aaaaccatccgcagcaaagt 87
              ||||||||||||||||||||
Sbjct: 155356 aaaaccatccgcagcaaagt 155337



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>emb|AL589737.11| Mouse DNA sequence from clone RP23-43L14 on chromosome 13, complete
             sequence
          Length = 202855

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    aagtaagcccctgaatattt 103
             ||||||||||||||||||||
Sbjct: 55303 aagtaagcccctgaatattt 55284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 337,393
Number of Sequences: 3902068
Number of extensions: 337393
Number of successful extensions: 18948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18944
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 89
effective length of database: 17,151,101,840
effective search space: 1526448063760
effective search space used: 1526448063760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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