ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CTR9_YEAST (P89105) Protein CTR9 32 0.57
2ACCN3_RAT (O35240) Amiloride-sensitive cation channel 3 (Acid-se... 30 1.3
3ACCN3_MOUSE (Q6X1Y6) Amiloride-sensitive cation channel 3 (Acid-... 30 1.3
4ACCN3_HUMAN (Q9UHC3) Amiloride-sensitive cation channel 3 (Acid-... 29 3.7
5ARD3_ORYSA (Q7XNS7) Putative 1,2-dihydroxy-3-keto-5-methylthiope... 28 4.8

>CTR9_YEAST (P89105) Protein CTR9|
          Length = 1077

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   HWLDVPCKDCNHRPFEKNLHALHLLLPFIYNKLARSQ*ASLHTPNTY-HWAITRLVGLQP 185
           HWL +    CNH    + +  + + L    N    S+ ASLHT  T+ H  + +   L  
Sbjct: 58  HWLTIALAYCNHGKTNEGIKLIEMALDVFQN----SERASLHTFLTWAHLNLAKGQSLSV 113

Query: 186 ATSARTTTESHLAAADVV 239
            T     T++ L   D +
Sbjct: 114 ETKEHELTQAELNLKDAI 131



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>ACCN3_RAT (O35240) Amiloride-sensitive cation channel 3 (Acid-sensing ion|
           channel 3) (ASIC3) (Dorsal root ASIC) (DRASIC)
          Length = 533

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 135 TPNTYHWAITRLVGLQPATSA 197
           TPN  HWA T L+GL PA  A
Sbjct: 104 TPNDLHWAGTALLGLDPAEHA 124



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>ACCN3_MOUSE (Q6X1Y6) Amiloride-sensitive cation channel 3 (Acid-sensing ion|
           channel 3) (ASIC3) (Dorsal root ASIC) (DRASIC)
          Length = 530

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 135 TPNTYHWAITRLVGLQPATSA 197
           TPN  HWA T L+GL PA  A
Sbjct: 104 TPNDLHWAGTALLGLDPAEHA 124



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>ACCN3_HUMAN (Q9UHC3) Amiloride-sensitive cation channel 3 (Acid-sensing ion|
           channel 3) (ASIC3) (hASIC3) (Testis sodium channel 1)
           (hTNaC1)
          Length = 531

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 135 TPNTYHWAITRLVGLQPATSA 197
           TPN  HWA + L+GL PA  A
Sbjct: 103 TPNDLHWAGSALLGLDPAEHA 123



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>ARD3_ORYSA (Q7XNS7) Putative 1,2-dihydroxy-3-keto-5-methylthiopentene|
           dioxygenase 3 (EC 1.13.-.-) (Aci-reductone dioxygenase
           3)
          Length = 206

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 109 LDHNELACIPQIHTIGPSHDWLACNLPHQHAPRRNPTL 222
           LD N      ++ + GP  DW A N PH H P R   L
Sbjct: 150 LDTNNYIKTMRLFSGGP--DWTAYNRPHDHLPERKKYL 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,294,330
Number of Sequences: 219361
Number of extensions: 755174
Number of successful extensions: 2323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2323
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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