ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart53h06 |
|---|---|
| Clone Library Name | barley_pub |
>POT1_ARATH (O22397) Potassium transporter 1 (AtPOT1) (AtKUP1) (AtKT1)| Length = 712 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/25 (60%), Positives = 18/25 (72%) Frame = +2 Query: 65 EPQKEEEETTSGKRKKEKTDEIQEA 139 EP EEEE +S +RKKE+ EI EA Sbjct: 626 EPGLEEEEMSSVRRKKEECMEIMEA 650
>UBP35_HUMAN (Q9P2H5) Ubiquitin carboxyl-terminal hydrolase 35 (EC 3.1.2.15)| (Ubiquitin thioesterase 35) (Ubiquitin-specific-processing protease 35) (Deubiquitinating enzyme 35) Length = 1017 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = +2 Query: 50 KRTAIEPQKEEEETTSGKRKKEKTDEIQE 136 +RT E EEEE+T G+ ++EK +E++E Sbjct: 685 ERTEKEEVGEEEESTRGEGEREKEEEVEE 713
>IFH1_YEAST (P39520) Protein IFH1 (Protein RRP3)| Length = 1085 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = +2 Query: 17 LFFNQSRSILPKRTAIEPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ 157 L+ ++ S K + P+KE EE +++KEK ++ ++ N+K+ Sbjct: 192 LYSSRENSNKNKSVKLSPKKENEEEQKEEKEKEKEEQQKQQESNKKE 238
>HS90B_RAT (P34058) Heat shock protein HSP 90-beta (HSP 84)| Length = 723 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 50 KRTAIEPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ*ISCLDKWT 184 ++ IE +EE SGK KK+KT +I+E +Q++ WT Sbjct: 245 EKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWT 289
>HS90B_MOUSE (P11499) Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific| transplantation 84 kDa antigen) (TSTA) Length = 723 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 50 KRTAIEPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ*ISCLDKWT 184 ++ IE +EE SGK KK+KT +I+E +Q++ WT Sbjct: 245 EKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWT 289
>HS90B_HUMAN (P08238) Heat shock protein HSP 90-beta (HSP 84) (HSP 90)| Length = 723 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 50 KRTAIEPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ*ISCLDKWT 184 ++ IE +EE SGK KK+KT +I+E +Q++ WT Sbjct: 245 EKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWT 289
>HS90B_HORSE (Q9GKX8) Heat shock protein HSP 90-beta (HSP 84)| Length = 723 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 50 KRTAIEPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ*ISCLDKWT 184 ++ IE +EE SGK KK+KT +I+E +Q++ WT Sbjct: 245 EKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWT 289
>TRI34_HUMAN (Q9BYJ4) Tripartite motif protein 34 (Interferon-responsive finger| protein 1) (RING finger protein 21) Length = 488 Score = 29.3 bits (64), Expect = 2.5 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Frame = +2 Query: 23 FNQSRSILPKRTAIEPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ-------*ISCLDKW 181 F+Q RSIL E Q+ EEE K+ +K E ++ + QKQ + C +W Sbjct: 187 FDQLRSILNNEEQRELQRLEEEE---KKTLDKFAEAEDELVQQKQLVRELISDVECRSQW 243 Query: 182 TCMHMVDRWS 211 + M ++ S Sbjct: 244 STMELLQDMS 253
>SPB42_CANAL (Q59NP8) ATP-dependent rRNA helicase SPB42 (EC 3.6.1.-)| Length = 631 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +2 Query: 50 KRTAIEPQKEEEETTSGKRKKEKTDEIQE 136 KR AIE Q EEE ++G K++ DE+ E Sbjct: 577 KREAIEKQIMEEERSNGGGNKDEEDEVVE 605
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +2 Query: 26 NQSRSILPKRTAIEPQKEEEETTS---GKRKKEKTDEIQEAIQN 148 +QSRS K + P KE+ + S GK + + D+ +E IQN Sbjct: 236 SQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQN 279
>YFI6_YEAST (P43597) Hypothetical 137.7 kDa protein in UGS1-FAB1 intergenic| region Length = 1233 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 65 EPQKEEEETTSGKRKKEKTDEIQEAIQNQK 154 E ++EEE +T K KKE QEA++N + Sbjct: 471 EEEEEEENSTFSKVKKENVTGEQEAVRNNE 500
>MYLK_HUMAN (Q15746) Myosin light chain kinase, smooth muscle and non-muscle| isozymes (EC 2.7.11.18) (MLCK) [Contains: Telokin (Kinase-related protein) (KRP)] Length = 1914 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +2 Query: 65 EPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ 157 EP +E E TT G++ +E DE++ + ++K+ Sbjct: 1414 EPSQESELTTVGEKPEEPKDEVEVSDDDEKE 1444
>MYLK_RABIT (P29294) Myosin light chain kinase, smooth muscle (EC 2.7.11.18)| (MLCK) [Contains: Telokin] Length = 1147 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +2 Query: 65 EPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ 157 EP +E E TT G++ +E DE++E + ++ Sbjct: 645 EPSQESELTTVGEKPEEPKDEVEEVSDDDEK 675
>DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA| Length = 653 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +1 Query: 70 PKGRGRNYVGQKKKREDG*DSGSYPKPKAMNFLSGQVDMHAHG*SMELEPNRIDQMSTAQ 249 P G G+ + + +G + Y + +A + G D H G +L P+R DQ+ TA+ Sbjct: 112 PSGPGQGRDPYESRGREGYEG--YGRHRADDHRQGHNDRHQGGPGDQLPPSRGDQLPTAR 169 Query: 250 AA 255 A Sbjct: 170 PA 171
>YJN1_YEAST (P47015) Hypothetical 41.5 kDa protein in MRS3-URA2 intergenic| region Length = 356 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +2 Query: 41 ILPKRTAIEPQKEEEETTSGKRKKEKTDEIQEAIQNQK 154 ++PK ++PQ ++ RKKE+ +++Q+ IQ +K Sbjct: 317 LIPKD--VKPQNNDKRALKELRKKERQEKLQKRIQRKK 352
>DNL1_HUMAN (P18858) DNA ligase 1 (EC 6.5.1.1) (DNA ligase I)| (Polydeoxyribonucleotide synthase [ATP] 1) Length = 919 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +2 Query: 32 SRSILPKRTAIEPQKE--EEETTSGKRKKEKTDE 127 +R LPKRT E +E E+E KRKKE+ +E Sbjct: 124 ARKQLPKRTIQEVLEEQSEDEDREAKRKKEEEEE 157
>DNJCC_RAT (Q925T0) DnaJ homolog subfamily C member 12 (J domain-containing| protein 1) Length = 198 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/49 (24%), Positives = 25/49 (51%) Frame = +2 Query: 65 EPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ*ISCLDKWTCMHMVDRWS 211 E ++ + ++T K +++++ ++ I Q L W C H+ RWS Sbjct: 134 ETKQGDPDSTPEKMMQKESESPEKGISPQNPDSPGLSDWNCGHLHFRWS 182
>CTL4_RAT (Q6MG71) Choline transporter-like protein 4 (Solute carrier family| 44 member 4) Length = 707 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -1 Query: 275 YFRFQQAAACAVDI*SIRFGSSSIDQPCACMSTCPDKKFIAFGF 144 YF AA A+++ SI P C+S+CP ++ GF Sbjct: 86 YFNILSCAA-AINVISIAENGLQCPTPQVCVSSCPQTPWVVEGF 128
>PTHR_RABIT (Q9GLC7) Parathyroid hormone-related protein precursor (PTH-rP)| (PTHrP) [Contains: Osteostatin] Length = 177 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +2 Query: 26 NQSRSILPKRTAIEPQKEEEETTSGKRKKEKTDEIQEAIQNQKQ 157 ++ R + + +EP KE+ T GK+KK K + +E + +++ Sbjct: 99 DEGRYLTQETNKVEPYKEQPLKTPGKKKKGKPGKRKEQEKKKRR 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,740,568 Number of Sequences: 219361 Number of extensions: 492894 Number of successful extensions: 2260 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2093 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2233 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
