ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inh... 194 9e-47
2dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhi... 123 3e-25
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
4dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
5gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 56 5e-05
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
7dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
8dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 5e-05
10dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for ch... 56 5e-05
11dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homolo... 56 5e-05
12dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homolo... 56 5e-05
13dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homolo... 56 5e-05
14dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homolo... 56 5e-05
15dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homolo... 56 5e-05
16dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for ... 56 5e-05
17dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
18dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
19dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
20ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.049
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.049
22dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.049
23dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.049
24ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.19
25gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv.... 44 0.19
26gb|AY107125.1| Zea mays PCO125117 mRNA sequence 44 0.19
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.77
28emb|CR661974.2|CNS0F9R0 Tetraodon nigroviridis full-length cDNA 42 0.77
29emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chr... 42 0.77
30emb|CR378665.1| Photobacterium profundum SS9; segment 3/12 42 0.77
31gb|AC129928.3| Homo sapiens chromosome 8, clone RP11-1112C19, co... 42 0.77
32emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in l... 42 0.77
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.77
34gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete ge... 42 0.77
35gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 0.77
36dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 42 0.77
37dbj|BS000117.1| Pan troglodytes chromosome 22 clone:RP43-027E03,... 42 0.77
38dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synth... 42 0.77
39dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.77
40dbj|AP001726.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 0.77
41dbj|AP005362.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 0.77
42dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, co... 42 0.77
43gb|U39744.1| Caenorhabditis elegans cosmid C03F11, complete sequ... 40 3.0
44gb|AC150651.3| Bos taurus BAC CH240-451E16 (Children's Hospital... 40 3.0
45gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome... 40 3.0
46gb|AC185956.1| Populus trichocarpa clone Pop1-93N08, complete se... 40 3.0
47emb|CR318625.10| Zebrafish DNA sequence from clone DKEY-119A7 in... 40 3.0
48emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 40 3.0
49ref|XM_733178.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 3.0
50ref|XM_739283.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 3.0
51gb|AC121238.17| Medicago truncatula clone mth2-34p9, complete se... 40 3.0
52emb|CR762396.8| Zebrafish DNA sequence from clone DKEY-262O12 in... 40 3.0
53emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chro... 40 3.0
54emb|BX855620.10| Zebrafish DNA sequence from clone DKEY-9M4 in l... 40 3.0
55emb|Z73100.2|SPAC26F1 S.pombe chromosome I cosmid c26F1 40 3.0
56emb|CR382398.1| Plasmodium falciparum chromosome 6, complete seq... 40 3.0
57emb|BX950184.7| Zebrafish DNA sequence from clone CH211-103O12 i... 40 3.0
58emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 i... 40 3.0
59emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 i... 40 3.0
60gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complet... 40 3.0
61gb|AF465311.1| Dictyostelium discoideum ABC transporter ABCA.9 (... 40 3.0
62emb|BX119984.15| Zebrafish DNA sequence from clone DKEY-257N17 i... 40 3.0
63gb|AC154693.2| Mus musculus BAC clone RP24-340P22 from chromosom... 40 3.0
64ref|NM_001020312.1| Schizosaccharomyces pombe 972h- hypothetical... 40 3.0
65dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DN... 40 3.0
66emb|BX901933.15| Zebrafish DNA sequence from clone DKEY-114H6 in... 40 3.0
67emb|AL929231.3| Zebrafish DNA sequence from clone BUSM1-46P4, co... 40 3.0
68emb|AL928816.2| Zebrafish DNA sequence from clone BUSM1-265N4, c... 40 3.0
69emb|CR391947.13| Zebrafish DNA sequence from clone DKEYP-88A4 in... 40 3.0
70gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone... 40 3.0
71emb|BX927330.9| Zebrafish DNA sequence from clone DKEY-43B14 in ... 40 3.0
72gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 fr... 40 3.0
73gb|AC004062.1|AC004062 Homo sapiens chromosome 4 clone B316M24 m... 40 3.0
74emb|BX088567.6| Mouse DNA sequence from clone RP23-21L20 on chro... 40 3.0 
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene)
          Length = 915

 Score =  194 bits (98), Expect = 9e-47
 Identities = 107/110 (97%)
 Strand = Plus / Minus

                                                                       
Query: 125 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 915 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtatcggtccca 856

                                                             
Query: 185 gagcatgatgccgccgtagttgtccttcttctgcgacaccggtgcgacgc 234
           ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 855 gagcatgatgccgccgtagttgtccttcttctgcgccaccggcgcgacgc 806
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>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III,
           complete cds
          Length = 934

 Score =  123 bits (62), Expect = 3e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                       
Query: 125 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 184
           ||||||||||||||||||  |||| ||||||| | |||||||||||||||| ||||||||
Sbjct: 932 tcaggcgtagtacttgatgtagctactgtagtcgctctgcttgtcgaagtatcggtccca 873

                                             
Query: 185 gagcatgatgccgccgtagttgtccttcttctgc 218
           ||||||||  ||||||||||||||||||||||||
Sbjct: 872 gagcatgaccccgccgtagttgtccttcttctgc 839
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                            
Query: 137      cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 196
                ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| |||
Sbjct: 14484656 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 14484715

                                       
Query: 197      gccgtagttgtccttcttctgcg 219
                |||||||||||||  ||||||||
Sbjct: 14484716 gccgtagttgtccgccttctgcg 14484738
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>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021M10
          Length = 163416

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                         
Query: 137   cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 196
             ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| |||
Sbjct: 77830 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 77889

                                    
Query: 197   gccgtagttgtccttcttctgcg 219
             |||||||||||||  ||||||||
Sbjct: 77890 gccgtagttgtccgccttctgcg 77912
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>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0022E16 map C481S, complete sequence
          Length = 179668

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 158   ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
             ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 82293 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 82246



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 164   cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
             ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 88121 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 88163



 Score = 42.1 bits (21), Expect = 0.77
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 166   tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
             |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 83663 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 83703
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 158      ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
                ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 28123738 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28123691



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 164      cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 28129566 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28129608



 Score = 42.1 bits (21), Expect = 0.77
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 166      tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 28125108 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28125148
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>dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J19, full
           insert sequence
          Length = 1176

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 988 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 941
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>dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E01, full
           insert sequence
          Length = 1234

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 989 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 942
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 158      ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
                ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 28108616 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28108569



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 164      cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 28114444 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28114486



 Score = 42.1 bits (21), Expect = 0.77
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 166      tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 28109986 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28110026
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>dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
           cds
          Length = 1220

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 963 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 916
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>dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C60571
          Length = 1220

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 975 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 928
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>dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C11701
          Length = 1171

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 933 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 886
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>dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C12269
          Length = 1214

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 973 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 926
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>dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C3540
          Length = 1229

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 972 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 925
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>dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds,clone:C10295
          Length = 1199

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 954 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 907
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>dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for class III chitinase
           homologue (OsChib3H-a)H-, complete cds, clone:C60129
          Length = 1187

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 158 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 205
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 957 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 910
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>dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101A20, full
           insert sequence
          Length = 1162

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 164 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 927 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 885
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>dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E14, full
           insert sequence
          Length = 1193

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 164 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 931 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 889
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>dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048M21, full
           insert sequence
          Length = 1153

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 164 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 918 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 876
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>ref|NM_193094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 951

 Score = 46.1 bits (23), Expect = 0.049
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 160 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           |||||||||||  ||| || ||||||| ||||| |||||||||||||
Sbjct: 916 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttg 870
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.049
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 160      tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
                |||||||||||  ||| || ||||||| ||||| |||||||||||||
Sbjct: 26162477 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttg 26162431
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>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full
           insert sequence
          Length = 1165

 Score = 46.1 bits (23), Expect = 0.049
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 160 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           |||||||||||  ||| || ||||||| ||||| |||||||||||||
Sbjct: 964 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttg 918
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score = 46.1 bits (23), Expect = 0.049
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 160   tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
             |||||||||||  ||| || ||||||| ||||| |||||||||||||
Sbjct: 54335 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttg 54289
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>ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus similar to putative
           endoplasmic reticulum protein, with at least 5
           transmembrane domains, of eukaryotic origin (56.3 kD)
           (4P439) (LOC592817), mRNA
          Length = 1917

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 147 ctgctgtagttggtctgcttgt 168
           ||||||||||||||||||||||
Sbjct: 86  ctgctgtagttggtctgcttgt 107
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>gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv. INRA 258,
           mercuric chloride-treated, leaves, mRNA Partial, 945 nt]
          Length = 945

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 177 cggtcccagagcatgatgccgccgtagttg 206
           |||||||| | |||||||||||||||||||
Sbjct: 870 cggtcccacaccatgatgccgccgtagttg 841
to top
>gb|AY107125.1| Zea mays PCO125117 mRNA sequence
          Length = 1252

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 177 cggtcccagagcatgatgccgccgtagttg 206
           |||||||| | |||||||||||||||||||
Sbjct: 928 cggtcccacaccatgatgccgccgtagttg 899
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 18      attattatttttatttatcca 38
               |||||||||||||||||||||
Sbjct: 9296566 attattatttttatttatcca 9296586
to top
>emb|CR661974.2|CNS0F9R0 Tetraodon nigroviridis full-length cDNA
          Length = 1323

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 20   tattatttttatttatccaag 40
            |||||||||||||||||||||
Sbjct: 1059 tattatttttatttatccaag 1079
to top
>emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chromosome 6, complete
             sequence
          Length = 200337

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    attattatttttatttatcca 38
             |||||||||||||||||||||
Sbjct: 75724 attattatttttatttatcca 75704
to top
>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12
          Length = 347213

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    attattatttttatttatcca 38
             |||||||||||||||||||||
Sbjct: 55388 attattatttttatttatcca 55368
to top
>gb|AC129928.3| Homo sapiens chromosome 8, clone RP11-1112C19, complete sequence
          Length = 141478

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     caattattatttttatttatc 36
              |||||||||||||||||||||
Sbjct: 106374 caattattatttttatttatc 106394
to top
>emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in linkage group 2, complete
              sequence
          Length = 264534

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 18     attattatttttatttatccaagta 42
              |||||||||||||||||| ||||||
Sbjct: 242608 attattatttttatttattcaagta 242584
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 18      attattatttttatttatcca 38
               |||||||||||||||||||||
Sbjct: 9294399 attattatttttatttatcca 9294419
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>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome
          Length = 335593

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 3      aagaacaactgttcaattattattt 27
              ||||||||||||||||||| |||||
Sbjct: 243278 aagaacaactgttcaattaatattt 243302
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>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0014A21, from chromosome 3, complete sequence
          Length = 134014

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    attattatttttatttatcca 38
             |||||||||||||||||||||
Sbjct: 59687 attattatttttatttatcca 59667
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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     ttcaattattatttttattta 34
              |||||||||||||||||||||
Sbjct: 956438 ttcaattattatttttattta 956458
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>dbj|BS000117.1| Pan troglodytes chromosome 22 clone:RP43-027E03, map 22, complete
             sequences
          Length = 155641

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tcaattattatttttatttat 35
             |||||||||||||||||||||
Sbjct: 82472 tcaattattatttttatttat 82492
to top
>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds
          Length = 250000

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     tcaattattatttttatttat 35
              |||||||||||||||||||||
Sbjct: 217230 tcaattattatttttatttat 217210
to top
>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full
           insert sequence
          Length = 1161

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 166 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 206
           |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 940 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 900
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>dbj|AP001726.1| Homo sapiens genomic DNA, chromosome 21q, section 70/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     tcaattattatttttatttat 35
              |||||||||||||||||||||
Sbjct: 335682 tcaattattatttttatttat 335702
to top
>dbj|AP005362.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1574E2, complete
              sequence
          Length = 219049

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     caattattatttttatttatc 36
              |||||||||||||||||||||
Sbjct: 147526 caattattatttttatttatc 147506
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>dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:D8F6,
             CBR1-HLCS region
          Length = 39159

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tcaattattatttttatttat 35
             |||||||||||||||||||||
Sbjct: 21346 tcaattattatttttatttat 21366
to top
>gb|U39744.1| Caenorhabditis elegans cosmid C03F11, complete sequence
          Length = 30601

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 6    aacaactgttcaattattattttt 29
            ||||||||||||||| ||||||||
Sbjct: 6467 aacaactgttcaatttttattttt 6444
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>gb|AC150651.3| Bos taurus  BAC CH240-451E16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 174648

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    attattatttttatttatccaagt 41
             |||||||||||||||||| |||||
Sbjct: 12410 attattatttttatttattcaagt 12387
to top
>gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome 12, complete sequence
          Length = 190196

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ttcaattattatttttattt 33
             ||||||||||||||||||||
Sbjct: 37564 ttcaattattatttttattt 37545
to top
>gb|AC185956.1| Populus trichocarpa clone Pop1-93N08, complete sequence
          Length = 73786

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aattattatttttatttatc 36
             ||||||||||||||||||||
Sbjct: 35552 aattattatttttatttatc 35533
to top
>emb|CR318625.10| Zebrafish DNA sequence from clone DKEY-119A7 in linkage group 17,
              complete sequence
          Length = 142057

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ttcaattattatttttattt 33
              ||||||||||||||||||||
Sbjct: 125089 ttcaattattatttttattt 125070
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>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
             complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ttattatttttatttatcca 38
             ||||||||||||||||||||
Sbjct: 12184 ttattatttttatttatcca 12165
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>ref|XM_733178.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000260.02.0)
           partial mRNA
          Length = 234

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  aattattatttttatttatc 36
           ||||||||||||||||||||
Sbjct: 232 aattattatttttatttatc 213
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>ref|XM_739283.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000521.03.0)
           partial mRNA
          Length = 471

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 12  tgttcaattattatttttatttat 35
           |||| |||||||||||||||||||
Sbjct: 156 tgttaaattattatttttatttat 133
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>gb|AC121238.17| Medicago truncatula clone mth2-34p9, complete sequence
          Length = 104878

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    attattatttttatttatcc 37
             ||||||||||||||||||||
Sbjct: 98119 attattatttttatttatcc 98138
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>emb|CR762396.8| Zebrafish DNA sequence from clone DKEY-262O12 in linkage group 1,
              complete sequence
          Length = 163635

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ttcaattattatttttattt 33
              ||||||||||||||||||||
Sbjct: 118265 ttcaattattatttttattt 118284
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>emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chromosome Xp11.22-11.3
              Contains a nicolin 1 (NICN1) pseudogene, a novel gene, the
              5'end of the ZNF157 gene for zinc finger protein 157
              (HZF22) and a UBX domain containing 2 (UBXD2) pseudogene,
              complete sequence
          Length = 152659

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     caattattatttttatttat 35
              ||||||||||||||||||||
Sbjct: 121322 caattattatttttatttat 121341
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>emb|BX855620.10| Zebrafish DNA sequence from clone DKEY-9M4 in linkage group 15,
             complete sequence
          Length = 33169

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aattattatttttatttatc 36
             ||||||||||||||||||||
Sbjct: 19986 aattattatttttatttatc 19967
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>emb|Z73100.2|SPAC26F1 S.pombe chromosome I cosmid c26F1
          Length = 37960

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  ctgcgacaccggtgcgacgc 234
            ||||||||||||||||||||
Sbjct: 7670 ctgcgacaccggtgcgacgc 7651
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>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5
          Length = 349418

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ttcaattattatttttattt 33
              ||||||||||||||||||||
Sbjct: 132191 ttcaattattatttttattt 132210
to top
>emb|BX950184.7| Zebrafish DNA sequence from clone CH211-103O12 in linkage group 12,
             complete sequence
          Length = 150475

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tgttcaattattatttttat 31
             ||||||||||||||||||||
Sbjct: 97242 tgttcaattattatttttat 97223
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>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7
             Contains three CpG islands, complete sequence
          Length = 110786

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    caatacatcagaatcaaatc 89
             ||||||||||||||||||||
Sbjct: 43424 caatacatcagaatcaaatc 43405
to top
>emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 in linkage group 10,
             complete sequence
          Length = 162115

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tcaattattatttttattta 34
             ||||||||||||||||||||
Sbjct: 25547 tcaattattatttttattta 25566
to top
>gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complete sequence
          Length = 195930

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aattattatttttatttatc 36
              ||||||||||||||||||||
Sbjct: 126479 aattattatttttatttatc 126460
to top
>gb|AF465311.1| Dictyostelium discoideum ABC transporter ABCA.9 (abca9) gene, partial
            cds
          Length = 4234

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   ttcaattattatttttattt 33
            ||||||||||||||||||||
Sbjct: 4043 ttcaattattatttttattt 4024
to top
>emb|BX119984.15| Zebrafish DNA sequence from clone DKEY-257N17 in linkage group 1,
             complete sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgttcaattattatttttat 31
             ||||||||||||||||||||
Sbjct: 15731 tgttcaattattatttttat 15750
to top
>gb|AC154693.2| Mus musculus BAC clone RP24-340P22 from chromosome 14, complete
             sequence
          Length = 182996

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 17    aattattatttttatttatccaagtaca 44
             |||||||||||||| || ||||||||||
Sbjct: 98061 aattattatttttaattttccaagtaca 98088
to top
>ref|NM_001020312.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPAC26F1.12c), partial mRNA
          Length = 1071

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 215 ctgcgacaccggtgcgacgc 234
           ||||||||||||||||||||
Sbjct: 634 ctgcgacaccggtgcgacgc 615
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>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence
          Length = 94287

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 185   gagcatgatgccgccgtagttgtccttc 212
             ||||||||||| |||| |||||||||||
Sbjct: 66383 gagcatgatgcggccggagttgtccttc 66356
to top
>emb|BX901933.15| Zebrafish DNA sequence from clone DKEY-114H6 in linkage group 22,
             complete sequence
          Length = 42656

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    ttattatttttatttatccaagta 42
             ||||||||||| ||||||||||||
Sbjct: 17692 ttattatttttttttatccaagta 17715
to top
>emb|AL929231.3| Zebrafish DNA sequence from clone BUSM1-46P4, complete sequence
          Length = 85305

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgttcaattattatttttat 31
             ||||||||||||||||||||
Sbjct: 73280 tgttcaattattatttttat 73299
to top
>emb|AL928816.2| Zebrafish DNA sequence from clone BUSM1-265N4, complete sequence
          Length = 98918

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgttcaattattatttttat 31
             ||||||||||||||||||||
Sbjct: 33614 tgttcaattattatttttat 33633
to top
>emb|CR391947.13| Zebrafish DNA sequence from clone DKEYP-88A4 in linkage group 1, complete
              sequence
          Length = 167207

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ttcaattattatttttattt 33
              ||||||||||||||||||||
Sbjct: 137407 ttcaattattatttttattt 137426
to top
>gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone rp23-327i21, complete
             sequence
          Length = 218889

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ttcaattattatttttattt 33
             ||||||||||||||||||||
Sbjct: 18723 ttcaattattatttttattt 18742
to top
>emb|BX927330.9| Zebrafish DNA sequence from clone DKEY-43B14 in linkage group 2,
             complete sequence
          Length = 203149

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aattattatttttatttatc 36
             ||||||||||||||||||||
Sbjct: 33340 aattattatttttatttatc 33321
to top
>gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 from chromosome unknown,
             complete sequence
          Length = 128941

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    attatttttatttatccaagtaca 44
             ||||| ||||||||||||||||||
Sbjct: 66721 attatctttatttatccaagtaca 66744
to top
>gb|AC004062.1|AC004062 Homo sapiens chromosome 4 clone B316M24 map 4q25, complete sequence
          Length = 154252

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ttcaattattatttttattt 33
             ||||||||||||||||||||
Sbjct: 20307 ttcaattattatttttattt 20288
to top
>emb|BX088567.6| Mouse DNA sequence from clone RP23-21L20 on chromosome X, complete
             sequence
          Length = 150122

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ttattatttttatttatcca 38
             ||||||||||||||||||||
Sbjct: 84264 ttattatttttatttatcca 84245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,029,688
Number of Sequences: 3902068
Number of extensions: 3029688
Number of successful extensions: 124426
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124071
Number of HSP's gapped (non-prelim): 355
length of query: 236
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 214
effective length of database: 17,147,199,772
effective search space: 3669500751208
effective search space used: 3669500751208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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