ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart53h03 |
|---|---|
| Clone Library Name | barley_pub |
>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1) Length = 289 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPFNKSRS 257 FVGAALAA+YHQVIIR IPF KSRS Sbjct: 266 FVGAALAAIYHQVIIRAIPF-KSRS 289
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic| protein 1.2) (OsPIP1.2) Length = 282 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/25 (80%), Positives = 23/25 (92%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPFNKSRS 257 F+GAALAA+YHQV+IR IPF KSRS Sbjct: 259 FIGAALAAIYHQVVIRAIPF-KSRS 282
>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)| (PIP1c) (Transmembrane protein B) (TMP-B) Length = 286 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/25 (76%), Positives = 23/25 (92%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPFNKSRS 257 F+GAALAA+YHQ++IR IPF KSRS Sbjct: 263 FIGAALAALYHQLVIRAIPF-KSRS 286
>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic| protein 1.4) (Transmembrane protein C) (TMP-C) Length = 287 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/25 (72%), Positives = 23/25 (92%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPFNKSRS 257 F+GAALAA+YHQ++IR IPF KS+S Sbjct: 264 FIGAALAALYHQIVIRAIPF-KSKS 287
>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein| 7a) (Turgor-responsive protein 31) Length = 289 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/20 (80%), Positives = 19/20 (95%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPF 272 F+GAALAA+YHQV+IR IPF Sbjct: 267 FIGAALAALYHQVVIRAIPF 286
>PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening-associated| membrane protein) (RAMP) Length = 286 Score = 38.9 bits (89), Expect = 0.003 Identities = 15/22 (68%), Positives = 21/22 (95%) Frame = -3 Query: 328 VGAALAAVYHQVIIRVIPFNKS 263 +GAALAA+YHQ+IIR +PF++S Sbjct: 265 IGAALAAIYHQIIIRAMPFHRS 286
>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic| protein 1d) (PIP1d) Length = 287 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPF 272 F+GAALAA+YHQ++IR IPF Sbjct: 264 FIGAALAALYHQIVIRAIPF 283
>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1) Length = 286 Score = 38.5 bits (88), Expect = 0.004 Identities = 19/25 (76%), Positives = 22/25 (88%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPFNKSRS 257 F+GAALAA+YH V+IR IPF KSRS Sbjct: 263 FIGAALAALYHVVVIRAIPF-KSRS 286
>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1) Length = 286 Score = 38.5 bits (88), Expect = 0.004 Identities = 19/25 (76%), Positives = 22/25 (88%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPFNKSRS 257 F+GAALAA+YH V+IR IPF KSRS Sbjct: 263 FIGAALAALYHVVVIRAIPF-KSRS 286
>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)| (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2) Length = 286 Score = 38.1 bits (87), Expect = 0.006 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPFNKSRS 257 F+GAALAA+YH ++IR IPF KSRS Sbjct: 263 FIGAALAALYHVIVIRAIPF-KSRS 286
>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)| (OsPIP1.3) (Water channel protein RWC3) (RWC-3) Length = 288 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/24 (75%), Positives = 21/24 (87%) Frame = -3 Query: 331 FVGAALAAVYHQVIIRVIPFNKSR 260 F+GAALAA+YH V+IR IPF KSR Sbjct: 265 FIGAALAAIYHVVVIRAIPF-KSR 287
>PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4)| (OsPIP2.4) Length = 286 Score = 31.2 bits (69), Expect = 0.67 Identities = 12/16 (75%), Positives = 16/16 (100%) Frame = -3 Query: 331 FVGAALAAVYHQVIIR 284 F+GAA+AA+YHQVI+R Sbjct: 258 FIGAAIAALYHQVILR 273
>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)| (OsPIP2.5) Length = 283 Score = 30.4 bits (67), Expect = 1.1 Identities = 10/16 (62%), Positives = 16/16 (100%) Frame = -3 Query: 331 FVGAALAAVYHQVIIR 284 F+GAA+AA+YHQ+++R Sbjct: 255 FIGAAIAALYHQIVLR 270
>CAC1H_RAT (Q9EQ60) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2359 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 250 DSATKADRNNEPVSHLPSILHPW 182 D A AD +E VSH+ S HPW Sbjct: 2086 DEAEAADPADEEVSHITSSAHPW 2108
>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2365 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 250 DSATKADRNNEPVSHLPSILHPW 182 D A AD +E VSH+ S HPW Sbjct: 2092 DDAEAADPADEEVSHITSSAHPW 2114
>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic| protein 2a) (PIP2a) (OsPIP2.1) Length = 290 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -3 Query: 331 FVGAALAAVYHQVIIR 284 FVGAA+AA YHQ I+R Sbjct: 261 FVGAAIAAFYHQYILR 276
>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2e) (PIP2e) Length = 289 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = -3 Query: 331 FVGAALAAVYHQVIIR 284 FVGAA+AA YHQ ++R Sbjct: 255 FVGAAIAAFYHQFVLR 270
>FABH1_BACCR (Q81GM0) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 (EC| 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III protein 1) (Beta-ketoacyl-ACP synthase III 1) (KAS III 1) Length = 310 Score = 28.5 bits (62), Expect = 4.4 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +2 Query: 92 LNLPQQEHTQLSH*ITHTSLDSGRREHVQEPGMENRRQMRNRLVIPIGFGSGVGLG 259 LNLPQ++ + +TS S V+E ++N R L+I +GFG G+ G Sbjct: 249 LNLPQEKMSMTIEKFGNTSASSIPIAMVEE--LQNGRIQDGDLIILVGFGGGLTWG 302
>FABH1_BACAN (Q81JG0) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 (EC| 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III protein 1) (Beta-ketoacyl-ACP synthase III 1) (KAS III 1) Length = 310 Score = 28.5 bits (62), Expect = 4.4 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +2 Query: 92 LNLPQQEHTQLSH*ITHTSLDSGRREHVQEPGMENRRQMRNRLVIPIGFGSGVGLG 259 LNLPQ++ + +TS S V+E ++N R L+I +GFG G+ G Sbjct: 249 LNLPQEKMSMTIEKFGNTSASSIPIAMVEE--LQNGRIQDGDLIILVGFGGGLTWG 302
>PROS_DROME (P29617) Protein prospero| Length = 1403 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%) Frame = -3 Query: 325 GAALAAVYHQVIIRVIPFNKSRS*ADS------ATKADRNNEPVSHLPSILHPWLL 176 G A AA HQ + P ++S + S A R++ P+ H PS+LHP LL Sbjct: 1119 GQATAAQLHQHHQQHHPHHQSMQLSSSPPGSLGALMDSRDSPPLPHPPSMLHPALL 1174
>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)| (PIP2a) Length = 287 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = -3 Query: 331 FVGAALAAVYHQVIIR 284 F+GAA+AA YHQ ++R Sbjct: 256 FIGAAIAAFYHQFVLR 271
>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)| (PIP2b) (TMP2b) Length = 285 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = -3 Query: 331 FVGAALAAVYHQVIIR 284 F+GAA+AA YHQ ++R Sbjct: 254 FIGAAIAAFYHQFVLR 269
>LRP10_HUMAN (Q7Z4F1) Low-density lipoprotein receptor-related protein 10| precursor Length = 713 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 227 PIGFGSGVGLGPALVERNYSD 289 P G GSG+G G L ER YS+ Sbjct: 314 PCGLGSGLGAGEGLGERCYSE 334
>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex| protein Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) (Fragment) Length = 1085 Score = 27.3 bits (59), Expect = 9.7 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Frame = +2 Query: 2 QSNLNSTHVNVPNATTGSC*METTATINYNLNLPQQEHTQLSH*ITHTSLDSGRREHV-- 175 Q S N+ ++ G C +T T+ + + E T S ++ S+ SG + Sbjct: 627 QEAQKSQDENIASSADGMCTDDTKVTVPFLCKSEEPEFTTKS--VSSPSVSSGTVDKPVD 684 Query: 176 ----QEPGMENRRQMRNRLVIPIGFGSGVGLGPALVERNYSDD 292 +E ++ Q+ ++ V GFGSG GL A + + S D Sbjct: 685 LSTRKENDADSTSQVESKTVT-FGFGSGPGLSFADLASSNSGD 726 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,403,773 Number of Sequences: 219361 Number of extensions: 936179 Number of successful extensions: 2693 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2624 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2691 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
