ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB009309.2| Hordeum vulgare HvPIP1;5 mRNA, complete cds 367 2e-98
2emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complet... 74 3e-10
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
4dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
5dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
6dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
7dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
8dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
9gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, ... 74 3e-10
10dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for ... 74 3e-10
11gb|AF131201.1| Zea mays plasma membrane MIP protein (pip1-2) mRN... 72 1e-09
12gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence 66 8e-08
13gb|DQ207683.1| Zea mays cultivar inbred line Mo17 IDP251 marker 66 8e-08
14gb|DQ207682.1| Zea mays cultivar B73 IDP251 marker 66 8e-08
15gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein... 66 8e-08
16gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein... 66 8e-08
17gb|AY103580.1| Zea mays PCO072544 mRNA sequence 66 8e-08
18gb|AY170841.1| Axonopus compressus plasma membrane MIP protein m... 58 2e-05
19gb|U87981.1|SBU87981 Sorghum bicolor membrane intrinsic protein ... 58 2e-05
20ref|XM_473480.1| Oryza sativa (japonica cultivar-group), predic... 56 7e-05
21emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 56 7e-05
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
23dbj|AK104736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
24dbj|AK098849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
25dbj|AK065188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
26dbj|AK058323.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
27emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein 54 3e-04
28gb|BT017668.1| Zea mays clone EL01N0441H09.c mRNA sequence 50 0.005
29gb|AY243800.1| Zea mays plasma membrane intrinsic protein (PIP1-... 50 0.005
30emb|X82633.1|ZMTRAPRO Z.mays mRNA for transmembrane protein 50 0.005
31gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, co... 42 1.1
32gb|AC157901.4| Mus musculus chromosome 18, clone RP23-189P21, co... 42 1.1
33ref|XM_788108.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.1
34emb|AL670462.8| Mouse DNA sequence from clone RP23-225F2 on chro... 42 1.1
35ref|NM_123261.3| Arabidopsis thaliana kinase AT5G38990 mRNA, com... 40 4.4
36gb|BC021438.1| Mus musculus cDNA sequence BC021438, mRNA (cDNA c... 40 4.4
37gb|BT000634.1| Arabidopsis thaliana protein kinase - like protei... 40 4.4
38gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 4.4
39gb|AY091785.1| Arabidopsis thaliana AT5g38990/K15E6_170 mRNA, co... 40 4.4
40gb|AC160973.4| Mus musculus BAC clone RP24-171J16 from chromosom... 40 4.4
41emb|BX830054.1|CNS0A1NS Arabidopsis thaliana Full-length cDNA Co... 40 4.4
42ref|XM_575081.1| PREDICTED: Rattus norvegicus similar to hypothe... 40 4.4
43ref|NM_145416.1| Mus musculus cDNA sequence BC021438 (BC021438),... 40 4.4
44dbj|AB016892.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.4
45gb|AC132334.3| Mus musculus BAC clone RP24-228N8 from 6, complet... 40 4.4
46emb|AL824707.7| Mouse DNA sequence from clone RP23-95O1 on chrom... 40 4.4 
>dbj|AB009309.2| Hordeum vulgare HvPIP1;5 mRNA, complete cds
          Length = 1147

 Score =  367 bits (185), Expect = 2e-98
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                        
Query: 145  gagtctggattcaggtaggagagaacatgttcaggagccagggatggagaatcgacggca 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 gagtctggattcaggtaggagagaacatgttcaggagccagggatggagaatcgacggca 1005

                                                                        
Query: 205  gatgcgaaacaggctcgttattccgatcggctttggtagcggagtcggcctaggacctgc 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 gatgcgaaacaggctcgttattccgatcggctttggtagcggagtcggcctaggacctgc 945

                                                                        
Query: 265  tcttgttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgc 324
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  tcttgttgaacggaattgctctgatgatcacctggtggtagacggctgccagggcggcgc 885

                     
Query: 325  caacgaagg 333
            |||||||||
Sbjct: 884  caacgaagg 876



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                     
Query: 61   aatggaaactacagcaaccataaattataacttaaatcttc 101
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 aatggaaactacagcaaccataaattataacttaaatcttc 1107
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>emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complete CDS
          Length = 1139

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
           |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 866 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 818
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                 
Query: 285      ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
                |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 27065623 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 27065575
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>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1486_E07
          Length = 110494

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 285   ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
             |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 37272 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 37224
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>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0461B08
          Length = 153743

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                               
Query: 285    ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
              |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 118825 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 118777
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>dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D06, full
           insert sequence
          Length = 1128

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
           |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 899 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 851
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>dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A07, full
           insert sequence
          Length = 1205

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
           |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 954 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 906
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>dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C05, full
           insert sequence
          Length = 1136

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
           |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 899 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 851
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>gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, complete cds
          Length = 1140

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
           |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 894 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 846
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>dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for water channel
           protein, complete cds
          Length = 1116

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
           |||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 897 ctgatgatcacctggtggtagatggcagccagggcagcgccaacgaagg 849
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>gb|AF131201.1| Zea mays plasma membrane MIP protein (pip1-2) mRNA, complete cds
          Length = 1280

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 270 ttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgccaacg 329
           |||||||| ||  |||||||||||||||||||||||| ||| |||||||| ||||||| |
Sbjct: 917 ttgaacgggatggctctgatgatcacctggtggtagatggcagccagggcagcgccaatg 858

               
Query: 330 aagg 333
           ||||
Sbjct: 857 aagg 854
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>gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence
          Length = 1154

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           |||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 801 ctgatgatcacctggtggtagatggcagccagggcggcgcc 761
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>gb|DQ207683.1| Zea mays cultivar inbred line Mo17 IDP251 marker
          Length = 824

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           |||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 277 ctgatgatcacctggtggtagatggcagccagggcggcgcc 317
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>gb|DQ207682.1| Zea mays cultivar B73 IDP251 marker
          Length = 763

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           |||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 500 ctgatgatcacctggtggtagatggcagccagggcggcgcc 460
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>gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein ZmPIP1-4 mRNA, complete
           cds
          Length = 1153

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           |||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 951 ctgatgatcacctggtggtagatggcagccagggcggcgcc 911
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>gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein ZmPIP1-3 mRNA, complete
           cds
          Length = 1296

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           |||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 946 ctgatgatcacctggtggtagatggcagccagggcggcgcc 906
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>gb|AY103580.1| Zea mays PCO072544 mRNA sequence
          Length = 1633

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 285  ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
            |||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1275 ctgatgatcacctggtggtagatggcagccagggcggcgcc 1235
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>gb|AY170841.1| Axonopus compressus plasma membrane MIP protein mRNA, partial cds
          Length = 423

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
           |||||||||||||||||||||| ||| || ||||| ||||||| |||||
Sbjct: 395 ctgatgatcacctggtggtagatggcggctagggcagcgccaatgaagg 347
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>gb|U87981.1|SBU87981 Sorghum bicolor membrane intrinsic protein (Mip1) mRNA, partial cds
          Length = 539

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgccaacgaagg 333
           |||||||||||||||||||||| ||| |||||||| || |||| |||||
Sbjct: 327 ctgatgatcacctggtggtagatggcagccagggcagcaccaatgaagg 279
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>ref|XM_473480.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 849

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 270 ttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgccaacg 329
           ||||| |||||| | ||||||| |||||||||||||| ||| || ||||| ||||||| |
Sbjct: 836 ttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaatg 777

               
Query: 330 aagg 333
           ||||
Sbjct: 776 aagg 773
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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 270   ttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgccaacg 329
             ||||| |||||| | ||||||| |||||||||||||| ||| || ||||| ||||||| |
Sbjct: 28667 ttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaatg 28608

                 
Query: 330   aagg 333
             ||||
Sbjct: 28607 aagg 28604
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 270      ttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgccaacg 329
                ||||| |||||| | ||||||| |||||||||||||| ||| || ||||| ||||||| |
Sbjct: 28021441 ttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaatg 28021382

                    
Query: 330      aagg 333
                ||||
Sbjct: 28021381 aagg 28021378
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>dbj|AK104736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D02, full
           insert sequence
          Length = 1163

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 270 ttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgccaacg 329
           ||||| |||||| | ||||||| |||||||||||||| ||| || ||||| ||||||| |
Sbjct: 913 ttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaatg 854

               
Query: 330 aagg 333
           ||||
Sbjct: 853 aagg 850
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>dbj|AK098849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E16, full
           insert sequence
          Length = 1164

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 270 ttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgccaacg 329
           ||||| |||||| | ||||||| |||||||||||||| ||| || ||||| ||||||| |
Sbjct: 914 ttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaatg 855

               
Query: 330 aagg 333
           ||||
Sbjct: 854 aagg 851
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>dbj|AK065188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E02, full
           insert sequence
          Length = 1167

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 270 ttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgccaacg 329
           ||||| |||||| | ||||||| |||||||||||||| ||| || ||||| ||||||| |
Sbjct: 916 ttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaatg 857

               
Query: 330 aagg 333
           ||||
Sbjct: 856 aagg 853
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>dbj|AK058323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B07, full
            insert sequence
          Length = 1462

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                        
Query: 270  ttgaacggaattactctgatgatcacctggtggtagacggctgccagggcggcgccaacg 329
            ||||| |||||| | ||||||| |||||||||||||| ||| || ||||| ||||||| |
Sbjct: 1212 ttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaatg 1153

                
Query: 330  aagg 333
            ||||
Sbjct: 1152 aagg 1149
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>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein
          Length = 1225

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 283 ctctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           ||||||||| |||||||||||||| ||| ||||| ||||||||
Sbjct: 911 ctctgatgaccacctggtggtagatggcggccagcgcggcgcc 869
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>gb|BT017668.1| Zea mays clone EL01N0441H09.c mRNA sequence
          Length = 698

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           |||||||||||||||||||||| ||| ||||| || |||||
Sbjct: 408 ctgatgatcacctggtggtagatggcagccagcgcagcgcc 368
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>gb|AY243800.1| Zea mays plasma membrane intrinsic protein (PIP1-1) mRNA, complete
           cds
          Length = 1086

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           |||||||||||||||||||||| ||| ||||| || |||||
Sbjct: 839 ctgatgatcacctggtggtagatggcagccagcgcagcgcc 799
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>emb|X82633.1|ZMTRAPRO Z.mays mRNA for transmembrane protein
          Length = 1169

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 285 ctgatgatcacctggtggtagacggctgccagggcggcgcc 325
           |||||||||||||||||||||| ||| ||||| || |||||
Sbjct: 896 ctgatgatcacctggtggtagatggcagccagcgcagcgcc 856
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>gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, complete sequence
          Length = 192276

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 156   caggtaggagagaacatgttc 176
             |||||||||||||||||||||
Sbjct: 56029 caggtaggagagaacatgttc 56009
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>gb|AC157901.4| Mus musculus chromosome 18, clone RP23-189P21, complete sequence
          Length = 191242

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 156   caggtaggagagaacatgttc 176
             |||||||||||||||||||||
Sbjct: 51673 caggtaggagagaacatgttc 51693
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>ref|XM_788108.1| PREDICTED: Strongylocentrotus purpuratus similar to Early endosome
           antigen 1 (Endosome-associated protein p162) (Zinc
           finger FYVE domain containing protein 2) (LOC588422),
           partial mRNA
          Length = 3969

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 251 ggcctaggacctgctcttgttgaac 275
           |||||||||||||||||| ||||||
Sbjct: 241 ggcctaggacctgctcttcttgaac 217
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>emb|AL670462.8| Mouse DNA sequence from clone RP23-225F2 on chromosome X, complete
             sequence
          Length = 199841

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    actacagcaaccataaattat 88
             |||||||||||||||||||||
Sbjct: 19804 actacagcaaccataaattat 19784
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>ref|NM_123261.3| Arabidopsis thaliana kinase AT5G38990 mRNA, complete cds
          Length = 2785

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  gatggagaatcgacggcaga 206
            ||||||||||||||||||||
Sbjct: 1555 gatggagaatcgacggcaga 1536
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>gb|BC021438.1| Mus musculus cDNA sequence BC021438, mRNA (cDNA clone MGC:29361
            IMAGE:5039543), complete cds
          Length = 2604

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  tcaggagccagggatggaga 194
            ||||||||||||||||||||
Sbjct: 2445 tcaggagccagggatggaga 2426
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>gb|BT000634.1| Arabidopsis thaliana protein kinase - like protein
            (At5g38990/K15E6_170) mRNA, complete cds
          Length = 2643

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  gatggagaatcgacggcaga 206
            ||||||||||||||||||||
Sbjct: 1545 gatggagaatcgacggcaga 1526
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     cggctgccagggcggcgcca 326
               ||||||||||||||||||||
Sbjct: 2089043 cggctgccagggcggcgcca 2089024
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>gb|AY091785.1| Arabidopsis thaliana AT5g38990/K15E6_170 mRNA, complete cds
          Length = 2821

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  gatggagaatcgacggcaga 206
            ||||||||||||||||||||
Sbjct: 1591 gatggagaatcgacggcaga 1572
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>gb|AC160973.4| Mus musculus BAC clone RP24-171J16 from chromosome 6, complete sequence
          Length = 159284

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   tcaggtaggagagaacatgttcag 178
             ||||| ||||||||||||||||||
Sbjct: 50922 tcaggaaggagagaacatgttcag 50945
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>emb|BX830054.1|CNS0A1NS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB56ZC11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2788

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  gatggagaatcgacggcaga 206
            ||||||||||||||||||||
Sbjct: 1605 gatggagaatcgacggcaga 1586
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>ref|XM_575081.1| PREDICTED: Rattus norvegicus similar to hypothetical gene supported
           by AK097565; BC033939 (LOC499746), mRNA
          Length = 2080

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 gttcaggagccagggatgga 192
           ||||||||||||||||||||
Sbjct: 60  gttcaggagccagggatgga 79
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>ref|NM_145416.1| Mus musculus cDNA sequence BC021438 (BC021438), mRNA
          Length = 2604

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  tcaggagccagggatggaga 194
            ||||||||||||||||||||
Sbjct: 2445 tcaggagccagggatggaga 2426
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>dbj|AB016892.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXF12
          Length = 66237

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  gatggagaatcgacggcaga 206
            ||||||||||||||||||||
Sbjct: 1121 gatggagaatcgacggcaga 1102
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>gb|AC132334.3| Mus musculus BAC clone RP24-228N8 from 6, complete sequence
          Length = 150109

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 155   tcaggtaggagagaacatgttcag 178
             ||||| ||||||||||||||||||
Sbjct: 25179 tcaggaaggagagaacatgttcag 25156
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>emb|AL824707.7| Mouse DNA sequence from clone RP23-95O1 on chromosome 4, complete
              sequence
          Length = 225002

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     cagcaaccataaattataac 91
              ||||||||||||||||||||
Sbjct: 142848 cagcaaccataaattataac 142867


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,026,682
Number of Sequences: 3902068
Number of extensions: 2026682
Number of successful extensions: 34949
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34862
Number of HSP's gapped (non-prelim): 87
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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