ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart53h02 |
|---|---|
| Clone Library Name | barley_pub |
>NDC1_PONPY (Q5RBY5) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 674 Score = 31.6 bits (70), Expect = 0.52 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -2 Query: 135 IEGLLQLAVLYALWCCGAVLVSLHFRRVWLLASFLAS 25 + GLL L++LY +W CGA L++ + W+L A+ Sbjct: 261 VSGLLNLSLLYHVWLCGAFLLTTWYVS-WILFKIYAT 296
>SUHW3_HUMAN (Q8ND82) Suppressor of hairy wing homolog 3| Length = 737 Score = 30.8 bits (68), Expect = 0.88 Identities = 23/78 (29%), Positives = 30/78 (38%) Frame = +1 Query: 94 PQCV*YCKLEQPFDTHIHAHQMKQNKNSTKCSKPTLKSLENTLGSSQCEHFIRDTKTEYF 273 P C+ K+ P+ H HQ K KC L S E +Q FI+ + E Sbjct: 445 PFCLKVSKMATPYMNHYMKHQKKGVHRCPKCRLQFLTSKEKAEHKAQHRTFIKPKELEGL 504 Query: 274 IPRHENGLRYPSPASRGP 327 P G + AS GP Sbjct: 505 PP----GAKVTIRASLGP 518
>Y1018_TREPA (O83981) UPF0144 protein TP1018| Length = 504 Score = 30.4 bits (67), Expect = 1.2 Identities = 23/48 (47%), Positives = 25/48 (52%) Frame = -2 Query: 168 VLFHLVCVDMCIEGLLQLAVLYALWCCGAVLVSLHFRRVWLLASFLAS 25 VLF L DMC EG+ L LY G V H + V LLAS LAS Sbjct: 290 VLFDLGIHDMCPEGVRALGRLYFRTSYGQ-NVLYHSKEVALLASMLAS 336
>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)| Length = 674 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 135 IEGLLQLAVLYALWCCGAVLVSLHFRRVWLLASFLAS 25 + GLL L++LY +W CG L++ + W+L A+ Sbjct: 261 VSGLLNLSLLYHVWLCGVFLLTTWYVS-WILFKIYAT 296
>PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95| (Pseudo-response regulator 95) (OsPRR95) Length = 623 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/67 (23%), Positives = 29/67 (43%) Frame = +1 Query: 109 YCKLEQPFDTHIHAHQMKQNKNSTKCSKPTLKSLENTLGSSQCEHFIRDTKTEYFIPRHE 288 + ++E P D H S+ K+L ++ S H I T++ +P + Sbjct: 506 HLRIEIPTDEPRHVSPTTGESGSSTVLDSARKTLSGSVCDSSSNHMIAPTESSNVVPENP 565 Query: 289 NGLRYPS 309 +GLR+ S Sbjct: 566 DGLRHLS 572
>SO1C1_MACFA (Q9GMU6) Solute carrier organic anion transporter family member 1C1| (Solute carrier family 21 member 14) Length = 602 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +1 Query: 187 SKPTLKSLENTLGSSQCEHFIRDTKTEYFIPRHEN 291 S P +S E++ SS+ FIRD T+Y P+ EN Sbjct: 188 SLPRSQSREDSNSSSEKSKFIRDDHTDYQTPQGEN 222
>NDC1_MOUSE (Q8VCB1) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 673 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -2 Query: 135 IEGLLQLAVLYALWCCGAVLVSLHFRRVWLLASFLASW 22 I GLL +++LY +W CG V+LL ++ +SW Sbjct: 262 IGGLLNVSLLYHVWLCG----------VFLLVTWYSSW 289
>PP2C5_YEAST (Q12511) Protein phosphatase 2C homolog 5 (EC 3.1.3.16) (PP2C-5)| Length = 572 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +3 Query: 144 PRTPDETKQKLDKVL*AHLEITRKYTRQFPMRTFYSRHENRIFYSETR 287 P T +K KVL + + R+YT++F R + + H N +YS T+ Sbjct: 3 PLTRTVAIKKTVKVL-SKCQSGREYTQKFLQRAYSTSHANSTYYSRTK 49
>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)| Length = 2798 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +1 Query: 133 DTHIHAHQMKQNKNSTKCSKPTLKSLENTLGSSQCEHFIRDTKTE 267 D + +MKQN++ SKP EN LG S+ +TKTE Sbjct: 605 DPELSKSEMKQNESRLSESKPN----ENQLGESKSNESKLETKTE 645
>ATL5J_ARATH (Q8L9W3) RING-H2 finger protein ATL5J| Length = 163 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -2 Query: 198 GGLRALCRVFVLFHLVCVDMCIEGLLQLAVLYALWC 91 GG + VF+ L CV MCI + L L+ LWC Sbjct: 24 GGGTMIATVFMALLLPCVGMCI---VFLIYLFLLWC 56
>SYGA_RICCN (Q92G10) Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)| (Glycine--tRNA ligase alpha chain) (GlyRS) Length = 288 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = -3 Query: 329 PGPRDAGEGYLRPFSCLGIKYSVFVSRIKCSHWELPSV 216 P P + E YL+ CLGI + R WE P++ Sbjct: 86 PSPDNIQELYLKSLECLGIDLKIHDIRFVEDDWESPTL 123
>LIN36_CAEEL (P34427) Protein lin-36 (Abnormal cell lineage protein 36)| Length = 962 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Frame = +1 Query: 109 YCKLEQPFDTHIHAHQMKQNKNSTKCSKPTLKSLENT------LGSSQCEHFI 249 Y +E+P D+H+ H ++Q+ + T+ +L+ T +G + EH I Sbjct: 15 YNDIEEPEDSHVTVHSVEQDSQHSGEESSTVDALQETEGDVDVIGEDEDEHDI 67
>SEM5A_HUMAN (Q13591) Semaphorin-5A precursor (Semaphorin F) (Sema F)| Length = 1074 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 6/50 (12%) Frame = -3 Query: 155 WCAWICVSKGCSSLQYYTHCGAAVQSLSHC------TSGVFGYWRHFWLP 24 +C W V K C+SL+ QS+S C G FG W W P Sbjct: 503 YCGWDVVMKKCTSLEESLSMTQWEQSISACPTRNLTVDGHFGVWSP-WTP 551
>RFC_SALMU (Q00474) O-antigen polymerase| Length = 399 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -2 Query: 243 MFALGTAECIF**FQGGLRALCRV--FVLFHLVCVDMCIEGLLQLAVLYALW 94 M LG C+ QG R L + FVLF +C+ + +L A++YAL+ Sbjct: 162 MLTLGVLLCMECFSQGYKRLLMLIISFVLFIAICMSLTRGAILVAALIYALY 213
>UL129_HCMVA (P16838) Hypothetical protein UL129| Length = 116 Score = 27.7 bits (60), Expect = 7.5 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = -3 Query: 170 LFCFIWCAWICVS 132 + C +WC WIC+S Sbjct: 88 IVCVLWCVWICLS 100
>NDC1_RAT (Q6AXN4) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 673 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 135 IEGLLQLAVLYALWCCGAVLVSLHFRRVWLLASFLAS 25 I GLL +++LY +W CG L+ + W+L A+ Sbjct: 262 IGGLLNVSLLYHVWLCGVFLLMTWYIS-WILFKIYAT 297
>TAAR1_MACMU (Q8HZ64) Trace amine-associated receptor 1 (Trace amine receptor 1)| (TaR-1) Length = 338 Score = 27.7 bits (60), Expect = 7.5 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Frame = -3 Query: 302 YLRPFSCLGIKYSVFVSRIKCSHWELPSVFSSDFKVGLEHFVEFLFCFIWCAWICVSKGC 123 Y + L + +F+S W +P+VF+ F+E F KG Sbjct: 130 YKAKINILVVCVMIFIS------WSVPAVFAFGMI-----FLELNF-----------KGA 167 Query: 122 SSLQY-YTHCGAAVQSLSHCTSGVFGYWRHFWLPGSL 15 + Y + HC SGV + F++PGS+ Sbjct: 168 EEIYYKHVHCRGGCSVFFSKISGVLAFMTSFYIPGSI 204
>PAQR3_MOUSE (Q6TCG8) Progestin and adipoQ receptor family member 3 (Progestin| and adipoQ receptor family member III) Length = 311 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -1 Query: 181 LSSFCFVSSGVRGYVYRRVAPACSTIRIVVLRCSPCLIALQACLVTGV 38 L F F + G+ Y V P+ S R + CS CL Q C++ V Sbjct: 78 LGFFLFFTLGI--YDMTSVLPSASASREDFVICSICLFCFQVCMLCSV 123
>PAQR3_HUMAN (Q6TCH7) Progestin and adipoQ receptor family member 3 (Progestin| and adipoQ receptor family member III) Length = 311 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -1 Query: 181 LSSFCFVSSGVRGYVYRRVAPACSTIRIVVLRCSPCLIALQACLVTGV 38 L F F + G+ Y V P+ S R + CS CL Q C++ V Sbjct: 78 LGFFLFFTLGI--YDMTSVLPSASASREDFVICSICLFCFQVCMLCSV 123
>GAS6_MOUSE (Q61592) Growth-arrest-specific protein 6 precursor (GAS-6)| Length = 674 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1 Query: 238 EHFIRDTKTEYFIPRHENGLR-YPSPASRGP 327 E F D +TEYF PR++ +R Y P + P Sbjct: 74 EVFENDPETEYFYPRYQECMRKYGRPEEKNP 104
>MTR10_YEAST (Q99189) mRNA transport regulator MTR10| Length = 972 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = -2 Query: 189 RALCRVFVLFHLVC-------VDMCIEGLLQLAVLYALWCCGAVLV 73 + L R+F FH+ C + I+G L LWC G+++V Sbjct: 685 KLLRRIFERFHVFCEPILPSVAEFLIQGYLTTGFGSYLWCSGSLIV 730
>NH108_CAEEL (O45449) Nuclear hormone receptor family member nhr-108| Length = 338 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -3 Query: 242 CSHWELPSVFSSDFKVGLEHFVEF 171 C+H EL +F D K+ HF++F Sbjct: 125 CNHQELDDMFEIDIKLISTHFIQF 148
>TTC5_MOUSE (Q99LG4) Tetratricopeptide repeat protein 5 (TPR repeat protein 5)| Length = 440 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +1 Query: 109 YCKLEQPFDTHIHAHQMKQNKNSTKCSKPTLKSLENTLGSSQCE 240 YC + F+TH ++ ++ + + TL+ +E LGS+Q E Sbjct: 24 YCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVE 67
>TAAR1_PANTR (Q5QD29) Trace amine-associated receptor 1 (Trace amine receptor 1)| (TaR-1) Length = 339 Score = 27.3 bits (59), Expect = 9.8 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Frame = -3 Query: 302 YLRPFSCLGIKYSVFVSRIKCSHWELPSVFSSDFKVGLEHFVEFLFCFIWCAWICVSKGC 123 Y + L I +F+S W +P+VF+ F+E F KG Sbjct: 131 YKAKINILVICVMIFIS------WSVPAVFAFGMI-----FLELNF-----------KGA 168 Query: 122 SSLQY-YTHCGAAVQSLSHCTSGVFGYWRHFWLPGSL 15 + Y + HC SGV + F++PGS+ Sbjct: 169 EEIYYKHVHCRGGCSVFFSKISGVLTFMTSFYIPGSI 205
>TAAR1_HUMAN (Q96RJ0) Trace amine-associated receptor 1 (Trace amine receptor 1)| (TaR-1) Length = 339 Score = 27.3 bits (59), Expect = 9.8 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Frame = -3 Query: 302 YLRPFSCLGIKYSVFVSRIKCSHWELPSVFSSDFKVGLEHFVEFLFCFIWCAWICVSKGC 123 Y + L I +F+S W +P+VF+ F+E F KG Sbjct: 131 YKAKMNILVICVMIFIS------WSVPAVFAFGMI-----FLELNF-----------KGA 168 Query: 122 SSLQY-YTHCGAAVQSLSHCTSGVFGYWRHFWLPGSL 15 + Y + HC SGV + F++PGS+ Sbjct: 169 EEIYYKHVHCRGGCSVFFSKISGVLTFMTSFYIPGSI 205
>PRDM4_HUMAN (Q9UKN5) PR domain zinc finger protein 4 (PR domain-containing| protein 4) Length = 801 Score = 27.3 bits (59), Expect = 9.8 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Frame = +1 Query: 124 QPFDTHIHAHQMKQNKNSTKCSKPTLKS--LENTLGSSQ------CEHFIRDTKTEYFIP 279 Q H+ H ++ KC K L++ L+ L S + CE + T+Y + Sbjct: 687 QDLKQHVLIHTQERQIKCPKCDKLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYLTKYHLT 746 Query: 280 RHENGLRYPSPASRGP 327 RH + P+ +S P Sbjct: 747 RHLKTCKGPTSSSSAP 762
>ST18_HUMAN (O60284) Suppression of tumorigenicity protein 18 (Zinc finger| protein 387) Length = 1047 Score = 27.3 bits (59), Expect = 9.8 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 7/67 (10%) Frame = +1 Query: 151 HQMKQNKNSTKCSKPTLKSLENTLGS-------SQCEHFIRDTKTEYFIPRHENGLRYPS 309 H + K TKC P + G S C H +R + HEN L+ P+ Sbjct: 357 HSPRPEKRETKCPIPGCDGTGHVTGLYPHHRSLSGCPHKVRVPLE--ILAMHENVLKCPT 414 Query: 310 PASRGPG 330 P G G Sbjct: 415 PGCTGRG 421
>MYCD_HUMAN (Q8IZQ8) Myocardin| Length = 938 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +2 Query: 11 HTDYQEAKNDASNQTRLKCNETRTAPQHHNAYSTASWSNPS 133 H D +AKN + R +CN H STA S P+ Sbjct: 54 HLDSDKAKNSLKRKARNRCNSADLVNMHILQASTAERSIPT 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,946,591 Number of Sequences: 219361 Number of extensions: 1024388 Number of successful extensions: 3512 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3460 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3512 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
