ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TOK1_YEAST (P40310) Outward-rectifier potassium channel TOK1 (Tw... 30 1.9
2GUN3_BACS4 (P19570) Endoglucanase C precursor (EC 3.2.1.4) (Endo... 29 3.2
3CASR_BOVIN (P35384) Extracellular calcium-sensing receptor precu... 28 5.5
4NUIM_TRYBB (P30826) NADH-ubiquinone oxidoreductase subunit 8 (EC... 28 7.2
5SEQA_HAEIN (P44564) Protein seqA homolog 27 9.4
6CASR_MOUSE (Q9QY96) Extracellular calcium-sensing receptor precu... 27 9.4
7GPDA_LACLA (Q9CFX6) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 27 9.4

>TOK1_YEAST (P40310) Outward-rectifier potassium channel TOK1 (Two-domain|
           outward rectifier K(+) channel YORK)
          Length = 691

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 141 LYFFVFTCNSPTFTCCLGPCWLIFLLTISQVVVIWR 34
           +++FV +C  P  T CLGP  +   ++I+ VV  WR
Sbjct: 73  VFWFVVSCYFPVITACLGP--VANTISIACVVEKWR 106



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>GUN3_BACS4 (P19570) Endoglucanase C precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase)
          Length = 825

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 192 LTTEGASNIERMSTY*LD*KGRLVFFFPKITSQTIGENGPFLSKCSL 332
           +++E  SN+   + Y LD KG+ +F      S+  G NGP+L++  +
Sbjct: 309 ISSEDRSNVMANAKYALD-KGKAIFATEWGVSEADGNNGPYLNEADV 354



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>CASR_BOVIN (P35384) Extracellular calcium-sensing receptor precursor (CaSR)|
           (Parathyroid Cell calcium-sensing receptor)
          Length = 1085

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -1

Query: 226 ILSIFEA--PSVVKSKWLACCFYMMSTH**FVFLCVYMQFTNIYLLLGTLLADIFTNHKP 53
           +L +FEA  P+    KW       +      VFLC +MQ     + L T     + NH+ 
Sbjct: 703 VLLVFEAKIPTSFHRKWWGLNLQFL-----LVFLCTFMQIVICAIWLNTAPPSSYRNHEL 757

Query: 52  GGCYLEVSCME 20
               + ++C E
Sbjct: 758 EDEIIFITCHE 768



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>NUIM_TRYBB (P30826) NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3)|
           (Maxicircle iron-sulfur protein 1)
          Length = 145

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 144 DLYFFVFTCNSPTFTCCLGPCWLIFLLTISQVV 46
           D  FF F C    F CC+  C  I L  +S +V
Sbjct: 5   DFLFFFFVCFYMCFVCCVTICLPIELTIVSLLV 37



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>SEQA_HAEIN (P44564) Protein seqA homolog|
          Length = 197

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 56  LMVSKNISQQGPKQQVNVGELHVNTKKYKSL 148
           L+++   + Q PKQ +NV E+++ T K +S+
Sbjct: 45  LIITSAETDQKPKQAINVKEVNIKTTKKQSI 75



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>CASR_MOUSE (Q9QY96) Extracellular calcium-sensing receptor precursor (CaSR)|
           (Parathyroid Cell calcium-sensing receptor)
          Length = 1079

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -1

Query: 226 ILSIFEA--PSVVKSKWLACCFYMMSTH**FVFLCVYMQFTNIYLLLGTLLADIFTNHKP 53
           +L +FEA  P+    KW       +      VFLC +MQ     + L T     + NH+ 
Sbjct: 702 VLLVFEAKIPTSFHRKWWGLNLQFL-----LVFLCTFMQIVICIIWLYTAPPSSYRNHEL 756

Query: 52  GGCYLEVSCME 20
               + ++C E
Sbjct: 757 EDEIIFITCHE 767



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>GPDA_LACLA (Q9CFX6) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 89  PKQQVNVGELHVNTKKYKSLVRGHHVKA 172
           P+Q   + E H NT+ +K +V    +KA
Sbjct: 36  PEQMAEINEKHTNTRYFKDVVLDEKIKA 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,756,916
Number of Sequences: 219361
Number of extensions: 1088830
Number of successful extensions: 2431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2431
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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