ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB086416.1| Hordeum vulgare mRNA for O-methyltransferase, co... 113 3e-22
2gb|AF033539.1|AF033539 Lolium perenne caffeic acid O-methyltrans... 105 6e-20
3ref|XM_480185.1| Oryza sativa (japonica cultivar-group), mRNA 64 2e-07
4dbj|AK061859.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
6gb|DQ288259.1| Oryza sativa (japonica cultivar-group) O-methyltr... 64 2e-07
7dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
8dbj|AB122056.1| Oryza sativa (japonica cultivar-group) COMT mRNA... 56 5e-05
9dbj|AK064768.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
10gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O... 52 8e-04
11gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O... 50 0.003
12gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltrans... 50 0.003
13gb|AC079258.4| Homo sapiens BAC clone RP11-410J22 from 2, comple... 46 0.050
14emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic ... 40 3.1
15gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyl... 40 3.1
16gb|AY217766.1| Sorghum bicolor caffeic acid O-methyltransferase ... 40 3.1
17gb|AF410153.1| Swinepox virus isolate 17077-99, complete genome 40 3.1
18gb|AF387790.1|AF387790 Sorghum bicolor O-methyltransferase mRNA,... 40 3.1
19dbj|AB085506.1| Uncultured bacterium gene for putative formyltet... 40 3.1
20emb|AL772211.7| Mouse DNA sequence from clone RP23-473B24 on chr... 40 3.1 
>dbj|AB086416.1| Hordeum vulgare mRNA for O-methyltransferase, complete cds
          Length = 1372

 Score =  113 bits (57), Expect = 3e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                        
Query: 125  ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 184
            |||||||||||||||||||||||||||||  ||  | |||||| ||||||||||||| ||
Sbjct: 1154 ctacttggtgtactccattgcccagaagttcgcaaagatgtagctggccttgacgcctgt 1095

                                                                     
Query: 185  aaacccggcagccctggcgagcttctcgagggccctcaagtacctttccttgccgcc 241
            |||||| |||||| |||| |||||||||| | |||| | || |||||||||||||||
Sbjct: 1094 aaaccctgcagccttggctagcttctcgaagtccctgaggttcctttccttgccgcc 1038
to top
>gb|AF033539.1|AF033539 Lolium perenne caffeic acid O-methyltransferase (OMT2) mRNA, complete
            cds
          Length = 1436

 Score =  105 bits (53), Expect = 6e-20
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                        
Query: 125  ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 184
            |||||| ||||||||||| ||||||||||||||| | |||||||||||| |||||| |||
Sbjct: 1130 ctacttagtgtactccatggcccagaagtcggcgaagatgtaggtggccgtgacgctggt 1071

                                                                     
Query: 185  aaacccggcagccctggcgagcttctcgagggccctcaagtacctttccttgccgcc 241
            ||| |||||  || ||||||||||||| ||| ||||   |||||| |||||||||||
Sbjct: 1070 aaagccggcgcccttggcgagcttctccaggtccctgtggtacctctccttgccgcc 1014
to top
>ref|XM_480185.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1425

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                        
Query: 124  cctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccgg 183
            ||||||||||| |||| || ||||||  || |||||| |||||||||||||||| |||||
Sbjct: 1190 cctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccgg 1131

                                    
Query: 184  taaacccggcagccctggcgagct 207
            | || ||||| || | ||||||||
Sbjct: 1130 tgaatccggcggcgcgggcgagct 1107
to top
>dbj|AK061859.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G09, full
           insert sequence
          Length = 1227

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                       
Query: 124 cctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccgg 183
           ||||||||||| |||| || ||||||  || |||||| |||||||||||||||| |||||
Sbjct: 988 cctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccgg 929

                                   
Query: 184 taaacccggcagccctggcgagct 207
           | || ||||| || | ||||||||
Sbjct: 928 tgaatccggcggcgcgggcgagct 905
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                           
Query: 124     cctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccgg 183
               ||||||||||| |||| || ||||||  || |||||| |||||||||||||||| |||||
Sbjct: 3331695 cctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccgg 3331754

                                       
Query: 184     taaacccggcagccctggcgagct 207
               | || ||||| || | ||||||||
Sbjct: 3331755 tgaatccggcggcgcgggcgagct 3331778
to top
>gb|DQ288259.1| Oryza sativa (japonica cultivar-group) O-methyltransferase (ROMT-9)
            mRNA, complete cds
          Length = 1190

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                        
Query: 124  cctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccgg 183
            ||||||||||| |||| || ||||||  || |||||| |||||||||||||||| |||||
Sbjct: 1122 cctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccgg 1063

                                    
Query: 184  taaacccggcagccctggcgagct 207
            | || ||||| || | ||||||||
Sbjct: 1062 tgaatccggcggcgcgggcgagct 1039
to top
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0438H08
          Length = 148626

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                          
Query: 124    cctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccgg 183
              ||||||||||| |||| || ||||||  || |||||| |||||||||||||||| |||||
Sbjct: 109262 cctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccgg 109321

                                      
Query: 184    taaacccggcagccctggcgagct 207
              | || ||||| || | ||||||||
Sbjct: 109322 tgaatccggcggcgcgggcgagct 109345
to top
>dbj|AB122056.1| Oryza sativa (japonica cultivar-group) COMT mRNA for caffeic acid
           o-methyl transferase, partial cds
          Length = 1067

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 70/84 (83%)
 Strand = Plus / Minus

                                                                       
Query: 124 cctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccgg 183
           ||||||| ||| |||| || ||||||  || |||||| |||||||||||||||| |||||
Sbjct: 808 cctactttgtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccgg 749

                                   
Query: 184 taaacccggcagccctggcgagct 207
           | || ||||| || | ||||||||
Sbjct: 748 tgaatccggcggcgcgggcgagct 725
to top
>dbj|AK064768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A05, full
            insert sequence
          Length = 1425

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 70/84 (83%)
 Strand = Plus / Minus

                                                                        
Query: 124  cctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccgg 183
            ||||||| ||| |||| || ||||||  || |||||| |||||||||||||||| |||||
Sbjct: 1190 cctactttgtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccgg 1131

                                    
Query: 184  taaacccggcagccctggcgagct 207
            | || ||||| || | ||||||||
Sbjct: 1130 tgaatccggcggcgcgggcgagct 1107
to top
>gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1438

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 125  ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 184
            |||||||||| |||| || |||||   || |||||| ||||| |||| ||||||||||||
Sbjct: 1144 ctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgccggt 1085

                                  
Query: 185  aaacccggcagccctggcgagc 206
             || |||||  |||||||||||
Sbjct: 1084 gaagccggctcccctggcgagc 1063
to top
>gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1446

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 125  ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 184
            |||||||||| |||| || |||||   || |||||| ||||| |||| ||||||||||||
Sbjct: 1127 ctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgccggt 1068

                                 
Query: 185  aaacccggcagccctggcgag 205
             || |||||  ||||||||||
Sbjct: 1067 gaatccggctcccctggcgag 1047
to top
>gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltransferase (OMT1) mRNA, complete
            cds
          Length = 1455

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 125  ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 184
            |||||||||| |||| || |||||   || |||||| ||||| |||| ||||||||||||
Sbjct: 1134 ctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgccggt 1075

                                 
Query: 185  aaacccggcagccctggcgag 205
             || |||||  ||||||||||
Sbjct: 1074 gaatccggctcccctggcgag 1054
to top
>gb|AC079258.4| Homo sapiens BAC clone RP11-410J22 from 2, complete sequence
          Length = 169408

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 87    caagaacacagcagcatgctata 109
             |||||||||||||||||||||||
Sbjct: 96328 caagaacacagcagcatgctata 96350
to top
>emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic acid 3-O-methyltransferase
          Length = 1486

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 126  tacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttga 177
            |||||| || |||| || ||||||  || |||||| ||||||||||||||||
Sbjct: 1192 tacttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttga 1141
to top
>gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyltransferase (COMT)
            gene, complete cds
          Length = 2012

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 126  tacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttga 177
            |||||| || |||| || ||||||  || |||||| ||||||||||||||||
Sbjct: 2011 tacttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttga 1960
to top
>gb|AY217766.1| Sorghum bicolor caffeic acid O-methyltransferase gene, complete cds
          Length = 3312

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 126  tacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttga 177
            |||||| || |||| || ||||||  || |||||| ||||||||||||||||
Sbjct: 2778 tacttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttga 2727
to top
>gb|AF410153.1| Swinepox virus isolate 17077-99, complete genome
          Length = 146454

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 49    tacggtcgattaagatttattagaaatt 76
             |||||| ||| |||||||||||||||||
Sbjct: 80246 tacggttgatgaagatttattagaaatt 80219
to top
>gb|AF387790.1|AF387790 Sorghum bicolor O-methyltransferase mRNA, complete cds
          Length = 1458

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 126  tacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttga 177
            |||||| || |||| || ||||||  || |||||| ||||||||||||||||
Sbjct: 1197 tacttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttga 1146
to top
>dbj|AB085506.1| Uncultured bacterium gene for putative formyltetrahydrofolate
           synthetase, partial cds, clone:FPB08
          Length = 1057

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 tgcccagaagtcggcgtaaatgta 166
           ||||||||| ||||||||||||||
Sbjct: 794 tgcccagaactcggcgtaaatgta 817
to top
>emb|AL772211.7| Mouse DNA sequence from clone RP23-473B24 on chromosome 4, complete
             sequence
          Length = 189040

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    agaacacagcagcatgctat 108
             ||||||||||||||||||||
Sbjct: 51136 agaacacagcagcatgctat 51155


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,062,929
Number of Sequences: 3902068
Number of extensions: 2062929
Number of successful extensions: 36604
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36556
Number of HSP's gapped (non-prelim): 47
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top