Clone Name | rbart53g09 |
---|---|
Clone Library Name | barley_pub |
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/28 (60%), Positives = 20/28 (71%) Frame = -3 Query: 363 ESGKTLVADKVIPANWAPSTFYRSIVQY 280 ESGKT+VA VIPANW P Y+S V + Sbjct: 246 ESGKTVVASNVIPANWQPGAIYKSNVNF 273
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = -3 Query: 366 NESGKTLVADKVIPANWAPSTFYRSIVQY 280 +ESGK ++A VIPANW P Y S VQ+ Sbjct: 240 SESGKKVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -3 Query: 366 NESGKTLVADKVIPANWAPSTFYRSIVQY 280 +ESGK ++A +IPANW P Y S VQ+ Sbjct: 162 SESGKKVIAKDIIPANWRPDAVYTSNVQF 190
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = -3 Query: 363 ESGKTLVADKVIPANWAPSTFYRSIVQY 280 ES K +VA VIPANW P YRSIV + Sbjct: 232 ESHKVIVAYNVIPANWKPDESYRSIVNF 259
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 36.6 bits (83), Expect = 0.015 Identities = 16/29 (55%), Positives = 19/29 (65%) Frame = -3 Query: 366 NESGKTLVADKVIPANWAPSTFYRSIVQY 280 +E G LV D VIPANW P T Y S +Q+ Sbjct: 216 SEGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 33.5 bits (75), Expect = 0.13 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 360 SGKTLVADKVIPANWAPSTFYRSIVQYS 277 +GKTL A V+P NWAP Y S + +S Sbjct: 234 AGKTLSATDVVPRNWAPKATYSSRLNFS 261
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 30.8 bits (68), Expect = 0.84 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 360 SGKTLVADKVIPANWAPSTFYRSIVQYS 277 + KTL A VIP+NW P Y S + +S Sbjct: 241 NNKTLSATDVIPSNWVPKATYTSRLNFS 268
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 30.8 bits (68), Expect = 0.84 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 360 SGKTLVADKVIPANWAPSTFYRSIVQY 280 SGK ++A VIP W+P Y S V + Sbjct: 231 SGKKIIAKGVIPEKWSPGAIYHSKVNF 257
>GHRHR_RAT (Q02644) Growth hormone-releasing hormone receptor precursor (GHRH| receptor) (GRF receptor) (GRFR) Length = 464 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 4/28 (14%) Frame = +3 Query: 267 SSFSCTGRWSGRRCWAPS----WPG*PC 338 SS C G W G CW P+ W PC Sbjct: 51 SSMGCPGTWDGLLCWPPTGSGQWVSLPC 78
>CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like protein 2)| Length = 1285 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +3 Query: 276 SCTGRWSGRRCWAPSW-PG*PCRPPASC 356 +C ++G C W PG PC PPA+C Sbjct: 832 TCPANFTGPTCAQQLWCPGQPCLPPATC 859
>GHRHR_MOUSE (P32082) Growth hormone-releasing hormone receptor precursor (GHRH| receptor) (GRF receptor) (GRFR) Length = 423 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%) Frame = +3 Query: 267 SSFSCTGRWSGRRCWAPS----WPG*PC 338 +S C G W G CW P+ W PC Sbjct: 51 TSLGCPGTWDGLLCWPPTGSGQWVSLPC 78
>MURD_SHEVI (Q9F1N2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 449 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -2 Query: 325 GQLGAQHLLPLHRPVQLKLLNSSSFGIICIHWLDLVSYYHGSFCMGTTEDVFD 167 G +G L L +PV L +L SSF + H L+ +S + C+ +ED D Sbjct: 142 GNIGIPVLDLLQKPVDLYILELSSFQLETTHSLNCIS----ATCLNISEDHMD 190
>LARG2_CHICK (Q66PG4) Glycosyltransferase-like protein LARGE2 (EC 2.4.-.-)| (Glycosyltransferase-like 1B) Length = 739 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = -1 Query: 116 LEYVGGLWRRGTFACA-LPRPPS 51 LEY G L RR F CA LP PPS Sbjct: 388 LEYDGNLLRRELFGCASLPSPPS 410
>GRK_DROME (P42287) Protein gurken precursor| Length = 295 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 15/76 (19%) Frame = +3 Query: 147 PDDPTP*SKTSSVVPMQND--------P**YDTKSSQCM-------HMIPNDDEFSSFSC 281 P DP+ S S P ND P +S C+ H + N+ F S C Sbjct: 155 PPDPSSSSTPDSTTPSPNDKETEIQMLPCSEAYNTSFCLNGGHCFQHPMVNNTVFHSCLC 214 Query: 282 TGRWSGRRCWAPSWPG 329 + G RC SW G Sbjct: 215 VNDYDGERCAYKSWNG 230
>DLL1_MOUSE (Q61483) Delta-like protein 1 precursor (Drosophila Delta homolog| 1) (Delta1) Length = 722 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = +3 Query: 249 PNDDEFSSFSCTGRWSGRRCWAPSWPG*PCRPP 347 P DD F F+C R G + P W G C P Sbjct: 193 PRDDAFGHFTCGDR--GEKMCDPGWKGQYCTDP 223
>EXTN_DAUCA (P06599) Extensin precursor| Length = 306 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +3 Query: 87 SPP*PTDVFKTHMHDDAYMTPDDPTP*SKTSSVVPMQNDP 206 SPP PT V+K +P PTP K S P + P Sbjct: 242 SPPPPTPVYKYKSPPPPMHSPPPPTPVYKYKSPPPPMHSP 281
>ENPP2_HUMAN (Q13822) Ectonucleotide pyrophosphatase/phosphodiesterase 2 (E-NPP| 2) (Phosphodiesterase I/nucleotide pyrophosphatase 2) (Phosphodiesterase I alpha) (PD-Ialpha) (Autotaxin) [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide pyro Length = 863 Score = 27.7 bits (60), Expect = 7.1 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Frame = +2 Query: 68 EHMQKCLSSIAHRRIQDTH--ARRRLHDTRRPNTLIKNILG------------STHAKRS 205 +H+ K L +RRI+D H RR H R+P + K G ++ ++ Sbjct: 427 QHLPKRLHYANNRRIEDIHLLVERRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQT 486 Query: 206 VIVRYQI*PMYAYDSK***VQQLQLYWTM 292 V V Y P + Y +K + ++LY M Sbjct: 487 VFVGYG--PTFKYKTKVPPFENIELYNVM 513
>ENPP2_MOUSE (Q9R1E6) Ectonucleotide pyrophosphatase/phosphodiesterase 2 (E-NPP| 2) (Phosphodiesterase I/nucleotide pyrophosphatase 2) (Phosphodiesterase I alpha) (PD-Ialpha) [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide pyrophosphatase Length = 862 Score = 27.3 bits (59), Expect = 9.3 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Frame = +2 Query: 68 EHMQKCLSSIAHRRIQDTH--ARRRLHDTRRPNTLIKNILG------------STHAKRS 205 +H+ K L +RRI+D H RR H R+P + K G ++ ++ Sbjct: 426 QHLPKRLHYANNRRIEDLHLLVERRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQT 485 Query: 206 VIVRYQI*PMYAYDSK***VQQLQLYWTM 292 V V Y P + Y +K + ++LY M Sbjct: 486 VFVGYG--PTFKYRTKVPPFENIELYNVM 512
>RM04_YEAST (P36517) 60S ribosomal protein L4, mitochondrial precursor (YmL4)| (MRP-L4) Length = 319 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Frame = +2 Query: 86 LSSIAHRRIQDTHAR-----RRLHDTRRPNTLIKNILGSTH 193 + + H+ D H+ R + R N L+KNI+GSTH Sbjct: 95 IPELRHKSFNDLHSLWYNCLREQNVLARENHLLKNIVGSTH 135
>CRUM2_MOUSE (Q80YA8) Crumbs homolog 2 (Crumbs-like protein 2) (Fragment)| Length = 1248 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +3 Query: 276 SCTGRWSGRRCWAPSW-PG*PCRPPASC 356 +C+ ++G C W P PC PPA+C Sbjct: 801 TCSENFTGPTCAQQRWCPRQPCLPPATC 828
>PACR_HUMAN (P41586) Pituitary adenylate cyclase-activating polypeptide type I| receptor precursor (PACAP type I receptor) (PACAP-R-1) Length = 468 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%) Frame = +3 Query: 213 YDTKSSQCMHMIPNDDEFSSFS-----CTGRWSGRRCWAPSWPG 329 + + + C+ I +E F+ C G W CW P+ G Sbjct: 27 FKKEQAMCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVG 70
>CHIT_BRUMA (P29030) Endochitinase precursor (EC 3.2.1.14) (MF1 antigen)| Length = 504 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Frame = -1 Query: 236 TLARFGIVLSRI--VLHGYYRGCF 171 TL F I+LS V+HGY RGC+ Sbjct: 5 TLILFFIILSNTITVIHGYVRGCY 28 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,232,545 Number of Sequences: 219361 Number of extensions: 1009598 Number of successful extensions: 2609 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2527 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2605 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)