ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase I... 28 5.8
2RAS1_YEAST (P01119) Ras-like protein 1 precursor 28 7.5
3AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 1... 27 9.9
4M130_STRPU (P08472) Mesenchyme-specific cell surface glycoprotei... 27 9.9
5CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48) 27 9.9
6PLLP_RAT (P47987) Plasmolipin (Plasma membrane proteolipid) 27 9.9
7PLLP_MOUSE (Q9DCU2) Plasmolipin (Plasma membrane proteolipid) 27 9.9
8CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48) 27 9.9
9YPS2_PLEBO (P15734) Hypothetical 13.1 kDa protein (ORF2) 27 9.9

>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)|
            (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase
            class VI type 11C)
          Length = 1132

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 95   YFFFLRIPRYITPWVYVLLCLFVSLFARV 9
            YF F ++   ++ W+ ++L +F+SLF  +
Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLFPEI 1085



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>RAS1_YEAST (P01119) Ras-like protein 1 precursor|
          Length = 309

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 39  KQYINPRGNVTGNTKEKKVGNGRALHVTHHTQ 134
           K Y+N   N  GNTK    GNG    ++   Q
Sbjct: 244 KNYVNQNNNNEGNTKYSSNGNGNRSDISRGNQ 275



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>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)|
           (Fragment)
          Length = 347

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 95  YFFFLRIPRYITPWVYVLLCLFVSLFARV 9
           YF F ++   ++ W+ ++L +F+SLF  +
Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLFPEI 313



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>M130_STRPU (P08472) Mesenchyme-specific cell surface glycoprotein precursor|
           (MSP130)
          Length = 779

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 27  NK*TKQYINPRGNVTGNTKEKKVGNGRALHVTHHT 131
           N  TK+Y+NP G +T       V NG +  + + T
Sbjct: 202 NNYTKKYVNPEGTITTVRLAGSVSNGPSQQIVNTT 236



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>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 79   RRKKK*EMGEHYTSRITHSTGNRLTKVIKRPNQPGAGRGYVR 204
            R++ K       T+R+ +   +R+ K ++R N P AG  +VR
Sbjct: 1320 RKENKFSAKRLQTTRLGNHLEDRVNKFLRRQNHPEAGEVFVR 1361



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>PLLP_RAT (P47987) Plasmolipin (Plasma membrane proteolipid)|
          Length = 182

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 101 ISYFFFLRIPRYITPWVYVLLCLFVS 24
           I Y F L +  Y+ PW  VLL  FV+
Sbjct: 85  IIYLFQLHMKLYMVPWPLVLLVFFVA 110



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>PLLP_MOUSE (Q9DCU2) Plasmolipin (Plasma membrane proteolipid)|
          Length = 182

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 101 ISYFFFLRIPRYITPWVYVLLCLFVS 24
           I Y F L +  Y+ PW  VLL  FV+
Sbjct: 85  IIYLFQLHMKLYMVPWPLVLLIFFVA 110



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>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 79   RRKKK*EMGEHYTSRITHSTGNRLTKVIKRPNQPGAGRGYVR 204
            R++ K       T+R+ +   +R+ K ++R N P AG  +VR
Sbjct: 1319 RKENKFSAKRLQTTRLGNHLEDRVNKFLRRQNHPEAGEVFVR 1360



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>YPS2_PLEBO (P15734) Hypothetical 13.1 kDa protein (ORF2)|
          Length = 122

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 24  TNK*TKQYINPRGNVTGNTKEKKVGNGRA 110
           TN  T+   N  GN TGNT      NG A
Sbjct: 87  TNSRTESESNGNGNATGNTSSNANSNGNA 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,552,376
Number of Sequences: 219361
Number of extensions: 670791
Number of successful extensions: 1324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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