>SYC_MYCGE (P47495) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 428

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 169 VPKYLLLGKTRLVLSNNKYYGTEGVQHFALNSTRSRGKLAN 291
           +P Y+     +LV  N+ Y  T+   +FA+NS +  G LAN
Sbjct: 115 IPDYI----DQLVNQNHAYVSTQNNVYFAVNSLKQYGYLAN 151

>V014_FOWPV (Q9J5I7) Putative ankyrin repeat protein FPV014|
          Length = 437

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 116 RRSL*RCCMSTDDMYVAKCIVCL 48
           RRSL   C++ DD  +AKC+ C+
Sbjct: 341 RRSLLDLCLNCDDNAIAKCLNCI 363

>L_EBOSM (Q66802) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2210

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 248  CCTPSVP*YLLLERTSLVFPNNKYLGTEGVYDS 150
            CCT  VP   L   T+L    +KY   E +YDS
Sbjct: 1350 CCTREVPAQYLTYTTTLNLDLSKYRNNELIYDS 1382

>HPPD_CAEBR (Q60Y65) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 393

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 223 YYGTEGVQHFALNST 267
           YYG  GVQH ALN+T
Sbjct: 259 YYGGSGVQHIALNTT 273

>L_MABVP (P35262) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2331

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 251  KCCTPSVP*YLLLERTSLVFPNNKYLGTEGVYDS 150
            KCCT  VP   L     L    NKY+  E VYD+
Sbjct: 1375 KCCTRHVPSEYLFFDKPLDVDLNKYMDNELVYDN 1408

>LRC8C_RAT (Q498T9) Leucine-rich repeat-containing protein 8C|
          Length = 803

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 110 IAFILFAS*LDI--NHYHILPPFLNTC 184
           I  +LF S LDI  NH+ +LPP L  C
Sbjct: 748 IGNLLFLSYLDIKGNHFEVLPPELGDC 774

>LRC8C_MOUSE (Q8R502) Leucine-rich repeat-containing protein 8C (Protein AD158)|
          Length = 803

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 110 IAFILFAS*LDI--NHYHILPPFLNTC 184
           I  +LF S LDI  NH+ +LPP L  C
Sbjct: 748 IGNLLFLSYLDIKGNHFEVLPPELGDC 774

>LRC8C_HUMAN (Q8TDW0) Leucine-rich repeat-containing protein 8C (Protein AD158)|
          Length = 803

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 110 IAFILFAS*LDI--NHYHILPPFLNTC 184
           I  +LF S LD+  NH+ ILPP L  C
Sbjct: 748 IGNLLFLSYLDVKGNHFEILPPELGDC 774

>LEP_STRR6 (P59662) Signal peptidase I (EC 3.4.21.89) (SPase I) (Leader|
           peptidase I)
          Length = 204

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 154 SYTPSVPKYLLLGKTRLVLSNNKYYGT 234
           S+T    +YLLLG  RLV S++++ GT
Sbjct: 155 SFTVPEGEYLLLGDDRLVSSDSRHVGT 181

>LEP_STRPN (O07344) Signal peptidase I (EC 3.4.21.89) (SPase I) (Leader|
           peptidase I)
          Length = 204

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 154 SYTPSVPKYLLLGKTRLVLSNNKYYGT 234
           S+T    +YLLLG  RLV S++++ GT
Sbjct: 155 SFTVPEGEYLLLGDDRLVSSDSRHVGT 181

>L_MABVM (P31352) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2331

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 251  KCCTPSVP*YLLLERTSLVFPNNKYLGTEGVYDS 150
            KCCT  VP   L     L    NKY+  E VYD+
Sbjct: 1375 KCCTRHVPSEYLYFDKPLDVDLNKYMDNELVYDN 1408

>HPPD_XENTR (Q5BKL0) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 394

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 223 YYGTEGVQHFALNST 267
           YYG+ GVQH ALN++
Sbjct: 259 YYGSAGVQHIALNTS 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,518,378
Number of Sequences: 219361
Number of extensions: 986858
Number of successful extensions: 2015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2015
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)