ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 220 2e-54
2emb|X66426.1|PAPOLYGU P.americana mRNA for polygalacturonase 42 0.80
3gb|AC099061.2| Homo sapiens chromosome 1 clone RP11-105D8, compl... 42 0.80
4gb|AC090982.4| Homo sapiens chromosome 15, clone RP11-88O16, com... 42 0.80
5gb|AC005219.1| Homo sapiens chromosome 5, P1 clone 878H11 (LBNL ... 40 3.2
6gb|AC147073.2| Pan troglodytes BAC clone RP43-169D10 from 7, com... 40 3.2
7gb|AC002381.1| Homo sapiens BAC clone CTB-20D2 from 7, complete ... 40 3.2
8gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 40 3.2
9gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, comp... 40 3.2
10gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, comp... 40 3.2
11emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chr... 40 3.2
12gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 geno... 40 3.2
13gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 gen... 40 3.2
14dbj|AK020901.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 3.2
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
16gb|AC119873.38| Mus musculus chromosome 3, clone RP24-275F18, co... 40 3.2
17gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, comple... 40 3.2
18gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Can... 40 3.2
19gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chrom... 40 3.2
20emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 3.2
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.2
22gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, comple... 40 3.2

>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score =  220 bits (111), Expect = 2e-54
 Identities = 114/115 (99%)
 Strand = Plus / Minus

                                                                       
Query: 132 tgtcgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagggtatattgttg 191
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 779 tgtcgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttg 720

                                                                  
Query: 192 gaaacattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaa 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaaacattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaa 665



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>emb|X66426.1|PAPOLYGU P.americana mRNA for polygalacturonase
          Length = 1755

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 178  agggtatattgttggaaacat 198
            |||||||||||||||||||||
Sbjct: 1290 agggtatattgttggaaacat 1310



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>gb|AC099061.2| Homo sapiens chromosome 1 clone RP11-105D8, complete sequence
          Length = 140987

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    aagtacttctcaggcttcaaa 40
             |||||||||||||||||||||
Sbjct: 48804 aagtacttctcaggcttcaaa 48784



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>gb|AC090982.4| Homo sapiens chromosome 15, clone RP11-88O16, complete sequence
          Length = 195549

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    aagtacttctcaggcttcaaa 40
             |||||||||||||||||||||
Sbjct: 52317 aagtacttctcaggcttcaaa 52297



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>gb|AC005219.1| Homo sapiens chromosome 5, P1 clone 878H11 (LBNL H45), complete
             sequence
          Length = 74951

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    ccaagtacttctcaggcttcaaat 41
             |||||| |||||||||||||||||
Sbjct: 57217 ccaagtccttctcaggcttcaaat 57240



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>gb|AC147073.2| Pan troglodytes BAC clone RP43-169D10 from 7, complete sequence
          Length = 159447

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    caagtacttctcaggcttcaaatc 42
             ||||||||||||| ||||||||||
Sbjct: 68182 caagtacttctcatgcttcaaatc 68159



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>gb|AC002381.1| Homo sapiens BAC clone CTB-20D2 from 7, complete sequence
          Length = 172533

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    caagtacttctcaggcttcaaatc 42
             ||||||||||||| ||||||||||
Sbjct: 98169 caagtacttctcatgcttcaaatc 98192



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>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete
             sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   attttgcataaaatgggaaa 224
             ||||||||||||||||||||
Sbjct: 73416 attttgcataaaatgggaaa 73435



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>gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, complete sequence
          Length = 140363

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 19   caagtacttctcaggcttcaaatc 42
            ||||||||||||| ||||||||||
Sbjct: 9410 caagtacttctcatgcttcaaatc 9387



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>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence
          Length = 208178

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    caagtacttctcaggcttcaaatc 42
             ||||||||||||| ||||||||||
Sbjct: 12258 caagtacttctcatgcttcaaatc 12235



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>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete
             sequence
          Length = 96045

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ttcacttattttgcataaaa 217
             ||||||||||||||||||||
Sbjct: 29584 ttcacttattttgcataaaa 29603



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>gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 genomic sequence, complete
              sequence
          Length = 134825

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 72     tcaaatcaaacatacaaaggatat 95
              ||||||||||||||||||| ||||
Sbjct: 130272 tcaaatcaaacatacaaagaatat 130295



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>gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 genomic sequence, complete
              sequence
          Length = 137029

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     tcaaatcaaacatacaaaggatat 95
              ||||||||||||||||||| ||||
Sbjct: 104686 tcaaatcaaacatacaaagaatat 104663



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>dbj|AK020901.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930028O11 product:unclassifiable, full insert
           sequence
          Length = 1109

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 atgaagaatgccaaaagaac 131
           ||||||||||||||||||||
Sbjct: 656 atgaagaatgccaaaagaac 637



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 72      tcaaatcaaacatacaaaggatat 95
               ||||||||||||||||||| ||||
Sbjct: 7036535 tcaaatcaaacatacaaagaatat 7036512



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>gb|AC119873.38| Mus musculus chromosome 3, clone RP24-275F18, complete sequence
          Length = 183408

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    atgaagaatgccaaaagaac 131
              ||||||||||||||||||||
Sbjct: 175694 atgaagaatgccaaaagaac 175675



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>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence
          Length = 109568

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   taaaatgggaaatatactag 232
             ||||||||||||||||||||
Sbjct: 81268 taaaatgggaaatatactag 81249



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>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 228073

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    acatacaaaggatatggtcc 100
             ||||||||||||||||||||
Sbjct: 98205 acatacaaaggatatggtcc 98186



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>gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chromosome 7, complete
              sequence
          Length = 231294

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 19     caagtacttctcaggcttcaaatc 42
              ||||||||||||| ||||||||||
Sbjct: 180658 caagtacttctcatgcttcaaatc 180681



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>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    gaaacattcacttattttgc 211
              ||||||||||||||||||||
Sbjct: 101727 gaaacattcacttattttgc 101708



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 72      tcaaatcaaacatacaaaggatat 95
               ||||||||||||||||||| ||||
Sbjct: 7039822 tcaaatcaaacatacaaagaatat 7039799



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>gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, complete sequence
          Length = 171554

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   atgaagaatgccaaaagaac 131
             ||||||||||||||||||||
Sbjct: 48921 atgaagaatgccaaaagaac 48902


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,441,179
Number of Sequences: 3902068
Number of extensions: 2441179
Number of successful extensions: 48923
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48874
Number of HSP's gapped (non-prelim): 49
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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