Clone Name | rbart53f10 |
---|---|
Clone Library Name | barley_pub |
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence Length = 779 Score = 220 bits (111), Expect = 2e-54 Identities = 114/115 (99%) Strand = Plus / Minus Query: 132 tgtcgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagggtatattgttg 191 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 779 tgtcgaggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttg 720 Query: 192 gaaacattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaa 246 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 719 gaaacattcacttattttgcataaaatgggaaatatactaggaacggtcgacaaa 665
>emb|X66426.1|PAPOLYGU P.americana mRNA for polygalacturonase Length = 1755 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 agggtatattgttggaaacat 198 ||||||||||||||||||||| Sbjct: 1290 agggtatattgttggaaacat 1310
>gb|AC099061.2| Homo sapiens chromosome 1 clone RP11-105D8, complete sequence Length = 140987 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 aagtacttctcaggcttcaaa 40 ||||||||||||||||||||| Sbjct: 48804 aagtacttctcaggcttcaaa 48784
>gb|AC090982.4| Homo sapiens chromosome 15, clone RP11-88O16, complete sequence Length = 195549 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 aagtacttctcaggcttcaaa 40 ||||||||||||||||||||| Sbjct: 52317 aagtacttctcaggcttcaaa 52297
>gb|AC005219.1| Homo sapiens chromosome 5, P1 clone 878H11 (LBNL H45), complete sequence Length = 74951 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 ccaagtacttctcaggcttcaaat 41 |||||| ||||||||||||||||| Sbjct: 57217 ccaagtccttctcaggcttcaaat 57240
>gb|AC147073.2| Pan troglodytes BAC clone RP43-169D10 from 7, complete sequence Length = 159447 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 caagtacttctcaggcttcaaatc 42 ||||||||||||| |||||||||| Sbjct: 68182 caagtacttctcatgcttcaaatc 68159
>gb|AC002381.1| Homo sapiens BAC clone CTB-20D2 from 7, complete sequence Length = 172533 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 caagtacttctcaggcttcaaatc 42 ||||||||||||| |||||||||| Sbjct: 98169 caagtacttctcatgcttcaaatc 98192
>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence Length = 219818 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 attttgcataaaatgggaaa 224 |||||||||||||||||||| Sbjct: 73416 attttgcataaaatgggaaa 73435
>gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, complete sequence Length = 140363 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 caagtacttctcaggcttcaaatc 42 ||||||||||||| |||||||||| Sbjct: 9410 caagtacttctcatgcttcaaatc 9387
>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence Length = 208178 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 caagtacttctcaggcttcaaatc 42 ||||||||||||| |||||||||| Sbjct: 12258 caagtacttctcatgcttcaaatc 12235
>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete sequence Length = 96045 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ttcacttattttgcataaaa 217 |||||||||||||||||||| Sbjct: 29584 ttcacttattttgcataaaa 29603
>gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 genomic sequence, complete sequence Length = 134825 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 tcaaatcaaacatacaaaggatat 95 ||||||||||||||||||| |||| Sbjct: 130272 tcaaatcaaacatacaaagaatat 130295
>gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 genomic sequence, complete sequence Length = 137029 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 tcaaatcaaacatacaaaggatat 95 ||||||||||||||||||| |||| Sbjct: 104686 tcaaatcaaacatacaaagaatat 104663
>dbj|AK020901.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930028O11 product:unclassifiable, full insert sequence Length = 1109 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atgaagaatgccaaaagaac 131 |||||||||||||||||||| Sbjct: 656 atgaagaatgccaaaagaac 637
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 tcaaatcaaacatacaaaggatat 95 ||||||||||||||||||| |||| Sbjct: 7036535 tcaaatcaaacatacaaagaatat 7036512
>gb|AC119873.38| Mus musculus chromosome 3, clone RP24-275F18, complete sequence Length = 183408 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atgaagaatgccaaaagaac 131 |||||||||||||||||||| Sbjct: 175694 atgaagaatgccaaaagaac 175675
>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence Length = 109568 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 taaaatgggaaatatactag 232 |||||||||||||||||||| Sbjct: 81268 taaaatgggaaatatactag 81249
>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 228073 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 acatacaaaggatatggtcc 100 |||||||||||||||||||| Sbjct: 98205 acatacaaaggatatggtcc 98186
>gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chromosome 7, complete sequence Length = 231294 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 caagtacttctcaggcttcaaatc 42 ||||||||||||| |||||||||| Sbjct: 180658 caagtacttctcatgcttcaaatc 180681
>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence Length = 149807 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gaaacattcacttattttgc 211 |||||||||||||||||||| Sbjct: 101727 gaaacattcacttattttgc 101708
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 tcaaatcaaacatacaaaggatat 95 ||||||||||||||||||| |||| Sbjct: 7039822 tcaaatcaaacatacaaagaatat 7039799
>gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, complete sequence Length = 171554 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atgaagaatgccaaaagaac 131 |||||||||||||||||||| Sbjct: 48921 atgaagaatgccaaaagaac 48902 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,441,179 Number of Sequences: 3902068 Number of extensions: 2441179 Number of successful extensions: 48923 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48874 Number of HSP's gapped (non-prelim): 49 length of query: 246 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 224 effective length of database: 17,147,199,772 effective search space: 3840972748928 effective search space used: 3840972748928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)