Clone Information

BLAST Search Result

Clone Name	rbart53f07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466265.1\| Oryza sativa (japonica cultivar-group), mRNA	178	9e-42
2	ref\|XM_507487.1\| PREDICTED Oryza sativa (japonica cultivar-group...	178	9e-42
3	ref\|XM_506829.2\| PREDICTED Oryza sativa (japonica cultivar-group...	178	9e-42
4	gb\|AY224558.1\| Oryza sativa (japonica cultivar-group) isolate 29...	178	9e-42
5	dbj\|AB110167.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	178	9e-42
6	dbj\|AK109435.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	178	9e-42
7	dbj\|AK104168.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	178	9e-42
8	dbj\|AK071800.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	178	9e-42
9	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
10	dbj\|AP004144.3\| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
11	gb\|BT012834.1\| Lycopersicon esculentum clone 113891R, mRNA sequence	113	4e-22
12	ref\|NM_001035688.1\| Arabidopsis thaliana 3-hydroxyisobutyrate de...	62	1e-06
13	ref\|NM_113449.2\| Arabidopsis thaliana 3-hydroxyisobutyrate dehyd...	62	1e-06
14	gb\|AY044183.1\| Arabidopsis thaliana gamma hydroxybutyrate dehydr...	62	1e-06
15	gb\|BT025039.1\| Arabidopsis thaliana At3g25530 mRNA, complete cds	62	1e-06
16	gb\|AY049298.1\| Arabidopsis thaliana AT3g25530/MWL2_15 mRNA, comp...	62	1e-06
17	gb\|AC148918.3\| Medicago truncatula chromosome 2 BAC clone mth2-4...	48	0.021
18	gb\|AC156448.2\| Volvox carteri clone JGIAOBO-33O24, complete sequ...	46	0.083
19	dbj\|AB025639.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	46	0.083
20	ref\|NM_101628.3\| Arabidopsis thaliana phosphogluconate dehydroge...	40	5.1
21	gb\|DP000016.1\| Pan troglodytes target 1 genomic scaffold	40	5.1
22	gb\|AC087729.2\| Pan troglodytes clone RP43-143F17, complete sequence	40	5.1
23	gb\|AC106873.3\| Homo sapiens BAC clone RP11-374M7 from 7, complet...	40	5.1
24	gb\|AC091320.5\| Homo sapiens BAC clone RP11-447A2 from 7, complet...	40	5.1
25	gb\|BT008734.1\| Arabidopsis thaliana At1g17650 gene, complete cds	40	5.1
26	gb\|AY093135.1\| Arabidopsis thaliana unknown protein (At1g17650) ...	40	5.1
27	dbj\|AK136847.1\| Mus musculus adult male diencephalon cDNA, RIKEN...	40	5.1
28	gb\|AC023194.9\| Homo sapiens, clone RP11-216N21, complete sequence	40	5.1
29	gb\|AF516609.1\| Malus x domestica putative disease resistance gen...	40	5.1
30	gb\|DP000025.1\| Gorilla gorilla gorilla target 1 genomic scaffold	40	5.1
31	gb\|DP000026.1\| Pongo pygmaeus target 1 genomic scaffold	40	5.1
32	gb\|AY085690.1\| Arabidopsis thaliana clone 17110 mRNA, complete s...	40	5.1
33	gb\|AY170493.1\| Glycine max Rga332 disease resistance protein-lik...	40	5.1
34	gb\|AY170483.1\| Glycine max Rga37 disease resistance protein-like...	40	5.1
35	gb\|AY170480.1\| Glycine max Rga32 disease resistance protein-like...	40	5.1
36	gb\|AF175394.1\|AF175394 Glycine max resistance protein LM12 mRNA,...	40	5.1
37	gb\|AC007544.4\| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Canc...	40	5.1
38	gb\|AF071302.1\|AF071302 HIV-1 isolate I3106-c from The Netherland...	40	5.1
39	gb\|U56888.1\|HIVU56888 Human immunodeficiency virus type 1 gag po...	40	5.1
40	gb\|U55805.1\|GMU55805 Glycine max clone RLG3 disease resistance p...	40	5.1
41	emb\|AL844145.9\| Mouse DNA sequence from clone RP23-403F4 on chro...	40	5.1

>ref|XM_466265.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1187

 Score =  178 bits (90), Expect = 9e-42
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                       
Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
           |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 975 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 916

                                                                       
Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256
           |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 915 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 856

                                                                       
Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316
            || || || ||||| |  |  || |||| |||||||||||||||||| ||||| |||||
Sbjct: 855 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 796

                                                                       
Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376
           |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| |||||
Sbjct: 795 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 736

                  
Query: 377 tgcgatg 383
            ||||||
Sbjct: 735 cgcgatg 729

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>ref|XM_507487.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.5 mRNA
          Length = 1235

 Score =  178 bits (90), Expect = 9e-42
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                       
Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
           |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 978 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 919

                                                                       
Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256
           |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 918 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 859

                                                                       
Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316
            || || || ||||| |  |  || |||| |||||||||||||||||| ||||| |||||
Sbjct: 858 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 799

                                                                       
Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376
           |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| |||||
Sbjct: 798 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 739

                  
Query: 377 tgcgatg 383
            ||||||
Sbjct: 738 cgcgatg 732

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>ref|XM_506829.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.5 mRNA
          Length = 1267

 Score =  178 bits (90), Expect = 9e-42
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                        
Query: 137  gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
            |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 1007 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 948

                                                                        
Query: 197  tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256
            |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 947  tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 888

                                                                        
Query: 257  ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316
             || || || ||||| |  |  || |||| |||||||||||||||||| ||||| |||||
Sbjct: 887  agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 828

                                                                        
Query: 317  aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376
            |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| |||||
Sbjct: 827  aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 768

                   
Query: 377  tgcgatg 383
             ||||||
Sbjct: 767  cgcgatg 761

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>gb|AY224558.1| Oryza sativa (japonica cultivar-group) isolate 29037 gamma
           hydroxybutyrate dehydrogenase-like protein mRNA,
           complete cds
          Length = 882

 Score =  178 bits (90), Expect = 9e-42
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                       
Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
           |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 873 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 814

                                                                       
Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256
           |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 813 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 754

                                                                       
Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316
            || || || ||||| |  |  || |||| |||||||||||||||||| ||||| |||||
Sbjct: 753 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 694

                                                                       
Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376
           |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| |||||
Sbjct: 693 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 634

                  
Query: 377 tgcgatg 383
            ||||||
Sbjct: 633 cgcgatg 627

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>dbj|AB110167.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, complete cds, clone: 12FPR024
          Length = 1163

 Score =  178 bits (90), Expect = 9e-42
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                       
Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
           |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 956 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 897

                                                                       
Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256
           |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 896 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 837

                                                                       
Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316
            || || || ||||| |  |  || |||| |||||||||||||||||| ||||| |||||
Sbjct: 836 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 777

                                                                       
Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376
           |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| |||||
Sbjct: 776 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 717

                  
Query: 377 tgcgatg 383
            ||||||
Sbjct: 716 cgcgatg 710

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>dbj|AK109435.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H04, full
            insert sequence
          Length = 1220

 Score =  178 bits (90), Expect = 9e-42
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                        
Query: 137  gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
            |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 1004 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 945

                                                                        
Query: 197  tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256
            |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 944  tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 885

                                                                        
Query: 257  ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316
             || || || ||||| |  |  || |||| |||||||||||||||||| ||||| |||||
Sbjct: 884  agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 825

                                                                        
Query: 317  aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376
            |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| |||||
Sbjct: 824  aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 765

                   
Query: 377  tgcgatg 383
             ||||||
Sbjct: 764  cgcgatg 758

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>dbj|AK104168.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E09, full
           insert sequence
          Length = 1187

 Score =  178 bits (90), Expect = 9e-42
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                       
Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
           |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 975 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 916

                                                                       
Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256
           |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 915 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 856

                                                                       
Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316
            || || || ||||| |  |  || |||| |||||||||||||||||| ||||| |||||
Sbjct: 855 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 796

                                                                       
Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376
           |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| |||||
Sbjct: 795 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 736

                  
Query: 377 tgcgatg 383
            ||||||
Sbjct: 735 cgcgatg 729

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>dbj|AK071800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114G06, full
           insert sequence
          Length = 1235

 Score =  178 bits (90), Expect = 9e-42
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                       
Query: 137 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
           |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 978 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 919

                                                                       
Query: 197 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 256
           |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 918 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 859

                                                                       
Query: 257 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 316
            || || || ||||| |  |  || |||| |||||||||||||||||| ||||| |||||
Sbjct: 858 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 799

                                                                       
Query: 317 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 376
           |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| |||||
Sbjct: 798 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 739

                  
Query: 377 tgcgatg 383
            ||||||
Sbjct: 738 cgcgatg 732

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                            
Query: 233      agcagctgcgactggcatggagacggcattttcatctcccaatgacagagccagcctcat 292
                ||||||||| |||||||||||||| || || || ||||| |  |  || |||| ||||||
Sbjct: 21367508 agcagctgccactggcatggagacagcgttctcgtctcctagggcaagtgccaacctcat 21367449

                                                                            
Query: 293      atccttctgctgatgtttgaggggaaatgctggattgtagctgccctgtagcatcgaagg 352
                |||||||||||| ||||| ||||||||||| || ||||||||||| || |||||||| ||
Sbjct: 21367448 atccttctgctggtgtttcaggggaaatgcagggttgtagctgccttgcagcatcgaggg 21367389

                                               
Query: 353      ccctttcatcttgaacatcggatttgcgatg 383
                |||||||| ||||||||| ||||| ||||||
Sbjct: 21367388 ccctttcagcttgaacattggattcgcgatg 21367358



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                            
Query: 137      gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
                |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 21367703 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 21367644

                                             
Query: 197      tcccaagcttcttgctttcttgaatgcct 225
                |||||||||||||||||||||||| ||||
Sbjct: 21367643 tcccaagcttcttgctttcttgaacgcct 21367615

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>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1712_E04
          Length = 110098

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                         
Query: 233   agcagctgcgactggcatggagacggcattttcatctcccaatgacagagccagcctcat 292
             ||||||||| |||||||||||||| || || || ||||| |  |  || |||| ||||||
Sbjct: 27461 agcagctgccactggcatggagacagcgttctcgtctcctagggcaagtgccaacctcat 27402

                                                                         
Query: 293   atccttctgctgatgtttgaggggaaatgctggattgtagctgccctgtagcatcgaagg 352
             |||||||||||| ||||| ||||||||||| || ||||||||||| || |||||||| ||
Sbjct: 27401 atccttctgctggtgtttcaggggaaatgcagggttgtagctgccttgcagcatcgaggg 27342

                                            
Query: 353   ccctttcatcttgaacatcggatttgcgatg 383
             |||||||| ||||||||| ||||| ||||||
Sbjct: 27341 ccctttcagcttgaacattggattcgcgatg 27311



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                         
Query: 137   gcctgaaccacctgtgcctttcagcacctcgtgcaccgcnnnnnnntccaggtcgccaag 196
             |||||| ||||||| ||| ||||| |||||||  |||||       |||||||| || ||
Sbjct: 27656 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 27597

                                          
Query: 197   tcccaagcttcttgctttcttgaatgcct 225
             |||||||||||||||||||||||| ||||
Sbjct: 27596 tcccaagcttcttgctttcttgaacgcct 27568

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>gb|BT012834.1| Lycopersicon esculentum clone 113891R, mRNA sequence
          Length = 1105

 Score =  113 bits (57), Expect = 4e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 198 cccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagacg 257
           |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |  || 
Sbjct: 845 cccaagctccttgccttcttgaatgcctcatttgcagcagctgcaactggcattggcact 786

                                                                
Query: 258 gcattttcatctcccaatgacagagccagcctcatatccttctgctgatgttt 310
           ||||| |||||||| | ||  |||||||||||||| |||||||||||||||||
Sbjct: 785 gcattctcatctccgagtgcaagagccagcctcatgtccttctgctgatgttt 733

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>ref|NM_001035688.1| Arabidopsis thaliana 3-hydroxyisobutyrate dehydrogenase/
           phosphogluconate dehydrogenase (decarboxylating)
           AT3G25530 transcript variant AT3G25530.2 mRNA, complete
           cds
          Length = 1065

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 106/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254
           |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| 
Sbjct: 861 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 802

                                                                       
Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314
           || || |||||||| || |  |  ||||| |||||||| || |||||||||||||| |  
Sbjct: 801 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 742

                      
Query: 315 ggaaatgctgg 325
           |||||||||||
Sbjct: 741 ggaaatgctgg 731

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>ref|NM_113449.2| Arabidopsis thaliana 3-hydroxyisobutyrate dehydrogenase/
           phosphogluconate dehydrogenase (decarboxylating)
           AT3G25530 transcript variant AT3G25530.1 mRNA, complete
           cds
          Length = 1099

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 106/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254
           |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| 
Sbjct: 895 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 836

                                                                       
Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314
           || || |||||||| || |  |  ||||| |||||||| || |||||||||||||| |  
Sbjct: 835 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 776

                      
Query: 315 ggaaatgctgg 325
           |||||||||||
Sbjct: 775 ggaaatgctgg 765

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>gb|AY044183.1| Arabidopsis thaliana gamma hydroxybutyrate dehydrogenase mRNA,
           complete cds
          Length = 1032

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 106/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254
           |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| 
Sbjct: 815 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 756

                                                                       
Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314
           || || |||||||| || |  |  ||||| |||||||| || |||||||||||||| |  
Sbjct: 755 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 696

                      
Query: 315 ggaaatgctgg 325
           |||||||||||
Sbjct: 695 ggaaatgctgg 685

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>gb|BT025039.1| Arabidopsis thaliana At3g25530 mRNA, complete cds
          Length = 870

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 106/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254
           |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| 
Sbjct: 815 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 756

                                                                       
Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314
           || || |||||||| || |  |  ||||| |||||||| || |||||||||||||| |  
Sbjct: 755 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 696

                      
Query: 315 ggaaatgctgg 325
           |||||||||||
Sbjct: 695 ggaaatgctgg 685

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>gb|AY049298.1| Arabidopsis thaliana AT3g25530/MWL2_15 mRNA, complete cds
          Length = 1081

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 106/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 195 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 254
           |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| 
Sbjct: 895 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 836

                                                                       
Query: 255 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 314
           || || |||||||| || |  |  ||||| |||||||| || |||||||||||||| |  
Sbjct: 835 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 776

                      
Query: 315 ggaaatgctgg 325
           |||||||||||
Sbjct: 775 ggaaatgctgg 765

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>gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-44o11, complete
             sequence
          Length = 126437

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 295   ccttctgctgatgtttgaggggaaatgc 322
             |||||||||||||||| |||||||||||
Sbjct: 79217 ccttctgctgatgttttaggggaaatgc 79244

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>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence
          Length = 38975

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                
Query: 282   gccagcctcatatccttctgctgatgtttgaggggaaatgctggattgtag 332
             ||||||| ||||||||||||||| || ||||| || ||||| || ||||||
Sbjct: 22730 gccagccgcatatccttctgctggtgcttgagcgggaatgcggggttgtag 22680

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>dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2
          Length = 84896

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 279   agagccagcctcatatccttctgctgatgtttgaggggaaatgctgg 325
             ||||| |||||||| || |||||||||||||| |  |||||||||||
Sbjct: 58963 agagctagcctcatgtctttctgctgatgtttcaatggaaatgctgg 59009

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>ref|NM_101628.3| Arabidopsis thaliana phosphogluconate dehydrogenase
           (decarboxylating) AT1G17650 mRNA, complete cds
          Length = 1242

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 ctcatatccttctgctgatg 307
           ||||||||||||||||||||
Sbjct: 968 ctcatatccttctgctgatg 949

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>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
          Length = 1623484

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gccagcctcatatccttctg 301
              ||||||||||||||||||||
Sbjct: 841246 gccagcctcatatccttctg 841265

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>gb|AC087729.2| Pan troglodytes clone RP43-143F17, complete sequence
          Length = 208928

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gccagcctcatatccttctg 301
              ||||||||||||||||||||
Sbjct: 142687 gccagcctcatatccttctg 142706

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>gb|AC106873.3| Homo sapiens BAC clone RP11-374M7 from 7, complete sequence
          Length = 99596

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   gccagcctcatatccttctg 301
             ||||||||||||||||||||
Sbjct: 39555 gccagcctcatatccttctg 39574

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>gb|AC091320.5| Homo sapiens BAC clone RP11-447A2 from 7, complete sequence
          Length = 179728

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   catatccttctgctgatgtt 309
             ||||||||||||||||||||
Sbjct: 81155 catatccttctgctgatgtt 81174

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>gb|BT008734.1| Arabidopsis thaliana At1g17650 gene, complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 ctcatatccttctgctgatg 307
           ||||||||||||||||||||
Sbjct: 875 ctcatatccttctgctgatg 856

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>gb|AY093135.1| Arabidopsis thaliana unknown protein (At1g17650) mRNA, complete cds
          Length = 1164

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 ctcatatccttctgctgatg 307
           ||||||||||||||||||||
Sbjct: 891 ctcatatccttctgctgatg 872

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>dbj|AK136847.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length
           enriched library, clone:9330129O16 product:hypothetical
           protein, full insert sequence
          Length = 2624

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 355 ctttcatcttgaacatcggatttg 378
           ||||||||||||||||| ||||||
Sbjct: 738 ctttcatcttgaacatctgatttg 761

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>gb|AC023194.9| Homo sapiens, clone RP11-216N21, complete sequence
          Length = 175834

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 192   ccaagtcccaagcttcttgctttc 215
             |||||||||||| |||||||||||
Sbjct: 41834 ccaagtcccaagtttcttgctttc 41857

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>gb|AF516609.1| Malus x domestica putative disease resistance gene analog NBS-LRR
           (FRGA-A3) gene, partial cds
          Length = 519

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 aagcttcttgctttcttgaa 220
           ||||||||||||||||||||
Sbjct: 68  aagcttcttgctttcttgaa 87

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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gccagcctcatatccttctg 301
              ||||||||||||||||||||
Sbjct: 759389 gccagcctcatatccttctg 759408

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>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gccagcctcatatccttctg 301
              ||||||||||||||||||||
Sbjct: 727046 gccagcctcatatccttctg 727065

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>gb|AY085690.1| Arabidopsis thaliana clone 17110 mRNA, complete sequence
          Length = 1156

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 ctcatatccttctgctgatg 307
           ||||||||||||||||||||
Sbjct: 906 ctcatatccttctgctgatg 887

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>gb|AY170493.1| Glycine max Rga332 disease resistance protein-like protein
           pseudogene, partial sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 aagcttcttgctttcttgaa 220
           ||||||||||||||||||||
Sbjct: 33  aagcttcttgctttcttgaa 52

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>gb|AY170483.1| Glycine max Rga37 disease resistance protein-like protein
           pseudogene, partial sequence
          Length = 462

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 aagcttcttgctttcttgaa 220
           ||||||||||||||||||||
Sbjct: 33  aagcttcttgctttcttgaa 52

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>gb|AY170480.1| Glycine max Rga32 disease resistance protein-like protein
           pseudogene, partial sequence
          Length = 462

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 aagcttcttgctttcttgaa 220
           ||||||||||||||||||||
Sbjct: 33  aagcttcttgctttcttgaa 52

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>gb|AF175394.1|AF175394 Glycine max resistance protein LM12 mRNA, partial cds
          Length = 1314

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 aagcttcttgctttcttgaa 220
           ||||||||||||||||||||
Sbjct: 716 aagcttcttgctttcttgaa 735

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>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 119034

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    caagaatatctgcatgccca 95
             ||||||||||||||||||||
Sbjct: 33665 caagaatatctgcatgccca 33646

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>gb|AF071302.1|AF071302 HIV-1 isolate I3106-c from The Netherlands, gag protein (gag) gene,
           partial cds
          Length = 738

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 agcagcagctgcgactggca 249
           ||||||||||||||||||||
Sbjct: 285 agcagcagctgcgactggca 304

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>gb|U56888.1|HIVU56888 Human immunodeficiency virus type 1 gag polyprotein (gag) gene,
           partial cds
          Length = 402

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 agcagcagctgcgactggca 249
           ||||||||||||||||||||
Sbjct: 351 agcagcagctgcgactggca 370

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>gb|U55805.1|GMU55805 Glycine max clone RLG3 disease resistance protein homolog gene,
           partial cds
          Length = 512

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 aagcttcttgctttcttgaa 220
           ||||||||||||||||||||
Sbjct: 62  aagcttcttgctttcttgaa 81

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>emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chromosome 2, complete
              sequence
          Length = 173053

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 355    ctttcatcttgaacatcggatttg 378
              ||||||||||||||||| ||||||
Sbjct: 131828 ctttcatcttgaacatctgatttg 131851


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,912,032
Number of Sequences: 3902068
Number of extensions: 2912032
Number of successful extensions: 53097
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52990
Number of HSP's gapped (non-prelim): 92
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result