ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 48 5e-06
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 45 6e-05
3AKIB1_MOUSE (Q6ZPS6) Ankyrin repeat and IBR domain-containing pr... 28 4.1
4MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-ass... 28 5.4
5TRMB_BDEBA (Q6MQU0) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 28 5.4
6RNC_GEOSL (Q74AX1) Ribonuclease III (EC 3.1.26.3) (RNase III) 28 7.0
7HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6) 28 7.0

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = -1

Query: 382 TTEELGLLSPDQGIAAAKELLR-QNKLPGFFIWSADSSKQSDYKFTYETRAQEIVAN 215
           +T+  G L PD G   A  +L+ Q KL G F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 245 STDSSGGLKPDNGFFRACSILKKQGKLHGIFVWSADDSLMSNNVFRYEMQAQSMLAS 301



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -1

Query: 382 TTEELGLLSPDQGIAAAKELLR-QNKLPGFFIWSADSSKQSDYKFTYETRAQEIVAN 215
           +T+  G L P  G   A  +L+ Q KL G F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 219 STDNSGGLKPRNGFFDACSILKKQGKLHGIFVWSADDSLMSNDVFKYEMQAQSLLAS 275



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>AKIB1_MOUSE (Q6ZPS6) Ankyrin repeat and IBR domain-containing protein 1|
           (Fragment)
          Length = 1087

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 239 GLIGELVVALLGAVRRPDEEPRQLVLPQQLLGRGDALVR 355
           G IG  + + L +V R  E PR  +   +LL  GD+L+R
Sbjct: 883 GAIGSSLPSRLDSVPRSTESPRAALSSSELLELGDSLMR 921



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>MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-associated factor|
           mot1) (Modifier of transcription 1)
          Length = 1953

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 286 SADSSKQSDYKFTYETRAQEIVANH*SP 203
           SAD    +DY FT ++R+  +V  H +P
Sbjct: 317 SADKKTGADYNFTAQSRSDRLVVEHKAP 344



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>TRMB_BDEBA (Q6MQU0) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 209

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 298 FFIWSADSSKQSDYKFTYETR 236
           +F+W+ D  +QS YK  +ET+
Sbjct: 154 YFLWAMDEIRQSPYKIIFETQ 174



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>RNC_GEOSL (Q74AX1) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 248

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 374 GAGAALSGPRHRRXXXXXXXXXXXGVLHLVGGQLQAERL 258
           G G   SG RHRR             ++L GG    ERL
Sbjct: 114 GRGEERSGGRHRRSLLANALEALLAAMYLDGGMAPVERL 152



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>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)|
          Length = 5635

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 355 PDQGIAAAKELLRQNKLPGFFIWSADSSKQSDYKFTYE 242
           P+  I A K  L +  LPG FI+    ++  DY+ T+E
Sbjct: 119 PEMSIGAIKIAL-EISLPGSFIYVFTDARSKDYRLTHE 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,633,886
Number of Sequences: 219361
Number of extensions: 872166
Number of successful extensions: 2292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2292
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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