ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart53f05 |
|---|---|
| Clone Library Name | barley_pub |
>LSI1_ORYSA (Q6Z2T3) Silicon transporter LSI1 (Low silicon protein 1)| Length = 298 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/41 (58%), Positives = 32/41 (78%) Frame = -3 Query: 341 YTYIRFEEEPSVKDGPQKLSSFKLRRLQSQRSMAVDEFDHV 219 YT+IRFE+ P + QKLSSFKLRRL+SQ+S+A D+ D + Sbjct: 254 YTFIRFEDTPK-EGSSQKLSSFKLRRLRSQQSIAADDVDEM 293
>SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1434 Score = 32.0 bits (71), Expect = 0.39 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -1 Query: 115 REVICTSRSMYDPCIYMFVRVYHVP 41 R ++ TS + C+Y+FVR YHVP Sbjct: 620 RYILLTSAQLVGVCLYIFVRPYHVP 644
>SYNJ2_RAT (O55207) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 32.0 bits (71), Expect = 0.39 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -1 Query: 115 REVICTSRSMYDPCIYMFVRVYHVP 41 R ++ TS + C+Y+FVR YHVP Sbjct: 637 RYILLTSAQLVGVCLYIFVRPYHVP 661
>SYNJ2_HUMAN (O15056) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 32.0 bits (71), Expect = 0.39 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -1 Query: 115 REVICTSRSMYDPCIYMFVRVYHVP 41 R ++ TS + C+Y+FVR YHVP Sbjct: 620 RYILLTSAQLVGVCLYIFVRPYHVP 644
>TS1R1_RAT (Q9Z0R8) Taste receptor type 1 member 1 precursor (G-protein| coupled receptor 70) Length = 840 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -3 Query: 119 SAGSHLYQSKYVRSMHLHVCTGLPCTSELCSRG 21 SA +Y++ Y + LH G CTSE+CSRG Sbjct: 383 SAAYRVYEAVYAVAHGLHQLLG--CTSEICSRG 413
>VGLM_SEOUR (P28729) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1134 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -2 Query: 246 HGRRRVRPCLIGRLVPLHPIDPSYIYALDLVCMRTYVSAHVYKRGKSFVP 97 H ++ CLIG LVP Y + +V RTY + + GK FVP Sbjct: 147 HACNMMKSCLIG-LVP---------YRIQVVYERTYCTTGILTEGKCFVP 186
>URE12_STRAW (Q826R9) Urease alpha subunit 2 (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit 2) Length = 573 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Frame = -2 Query: 234 RVRPCLIGRLVPLHPIDPSYIYALDL--------VCMRTYVSAHVYKRGKSFVP 97 R+RP IG LH + I + D V MRT+ +AHV KR + +P Sbjct: 343 RIRPSTIGAEDILHDLGAISIISSDAQAMGRVGEVIMRTWQTAHVMKRRRGALP 396
>MKRN2_HUMAN (Q9H000) Makorin-2 (RING finger protein 62)| Length = 416 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -2 Query: 222 CLIGRLVPLHPIDPSYIYALDLVCMRTYVSAHVYKRGKSFVPVE--VCTIHASTCLYGST 49 C I RL LHP DP A + +CM T+ H ++ +F + VC+I L ++ Sbjct: 193 CEICRLQVLHPFDPEQRKAHEKICMLTF--EHEMEKAFAFQASQDKVCSICMEVILEKAS 250 Query: 48 MYQR 37 +R Sbjct: 251 ASER 254
>MKRN2_MOUSE (Q9ERV1) Makorin-2| Length = 416 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -2 Query: 222 CLIGRLVPLHPIDPSYIYALDLVCMRTYVSAHVYKRGKSFVPVE--VCTIHASTCLYGST 49 C I RL LHP DP A + +CM T+ H ++ +F + VC+I L ++ Sbjct: 193 CEICRLQVLHPFDPEQRKAHEKMCMSTF--EHEMEKAFAFQASQDKVCSICMEVILEKAS 250 Query: 48 MYQR 37 +R Sbjct: 251 ASER 254
>LAR_DROME (P16621) Tyrosine-protein phosphatase Lar precursor (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase) (dLAR) Length = 2029 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 199 WHQPADQTWSNSSTAMDRWLCRRRSLKEESFCGPSLTE 312 W +PA QT+ RW + ++LKEE GP +T+ Sbjct: 834 WERPA-QTYGELRGYRLRWGVKDQALKEEMLSGPQMTK 870
>URE11_STRCO (Q9FCD3) Urease alpha subunit 1 (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit 1) Length = 573 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Frame = -2 Query: 234 RVRPCLIGRLVPLHPIDPSYIYALDL--------VCMRTYVSAHVYKRGKSFVP 97 R+RP I LH + I + D V +RT+ +AHV KR + F+P Sbjct: 343 RIRPSTIAAEDILHDMGAISIMSSDAQAMGRIGEVILRTWQTAHVMKRRRGFLP 396
>VGLM_SEOUS (P17880) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1133 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -2 Query: 249 VHGRRRVRPCLIGRLVPLHPIDPSYIYALDLVCMRTYVSAHVYKRGKSFVP 97 +H ++ CLIG L P Y + +V RTY + + GK FVP Sbjct: 146 IHACNMMKSCLIG----LGP------YRIQVVYERTYCTTGILTEGKCFVP 186
>VGLM_HANTB (P28728) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1133 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -2 Query: 249 VHGRRRVRPCLIGRLVPLHPIDPSYIYALDLVCMRTYVSAHVYKRGKSFVP 97 +H ++ CLIG L P Y + +V RTY + + GK FVP Sbjct: 146 IHACNMMKSCLIG----LGP------YRIQVVYERTYCTTGILTEGKCFVP 186
>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 28.1 bits (61), Expect = 5.6 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -3 Query: 212 AGWCHYTRSTPAIYMLLIWFAC 147 +GWCHY +S+ + L I +AC Sbjct: 1089 SGWCHYCKSSCHVSSLRIPYAC 1110
>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 28.1 bits (61), Expect = 5.6 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -3 Query: 212 AGWCHYTRSTPAIYMLLIWFAC 147 +GWCHY +S+ + L I +AC Sbjct: 1089 SGWCHYCKSSCHVSSLRIPYAC 1110
>ATR_DROME (Q9VXG8) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein homolog) (ATR homolog) (dATR) (Meiotic protein 41) Length = 2517 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = -3 Query: 134 VRTCTSAGSHLYQSKYVRSMHLHVCTGLPCTSELCSR 24 +R+C++ H Y + Y + LH+ L C+ EL + Sbjct: 1704 LRSCSAVQQHSYANAYDAVLKLHLVHELHCSQELVEK 1740
>PRPE_SALTY (P55912) Propionate--CoA ligase (EC 6.2.1.17) (Propionyl-CoA| synthetase) Length = 628 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = +1 Query: 154 NQIKSIYIAGVDRV*WHQPADQTWSNSSTAMDRWLC 261 N+ ++ + R+ W QP QT +S RW C Sbjct: 12 NEPEAFWAEQARRIDWRQPFTQTLDHSRPPFARWFC 47
>VGLM_SEOU8 (P33455) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1133 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -2 Query: 249 VHGRRRVRPCLIGRLVPLHPIDPSYIYALDLVCMRTYVSAHVYKRGKSFVP 97 +H ++ CLIG L P Y + +V RTY + + GK FVP Sbjct: 146 IHACNMMKSCLIG----LGP------YRVQVVYERTYCTTGILTEGKCFVP 186
>DKK3_MOUSE (Q9QUN9) Dickkopf-related protein 3 precursor (Dkk-3) (Dickkopf-3)| (mDkk-3) Length = 349 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 89 YVRSMHLHVCTGLPCTSELCSRGTEEVLD 3 + R + VCT LP ELC T ++LD Sbjct: 222 FQRGLLFPVCTPLPVEGELCHDPTSQLLD 250 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,301,415 Number of Sequences: 219361 Number of extensions: 906907 Number of successful extensions: 2494 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2493 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
