Clone Name | rbart53f05 |
---|---|
Clone Library Name | barley_pub |
>gb|AF326484.1|AF326484 Zea mays NOD26-like membrane integral protein ZmNIP2-1 mRNA, complete cds Length = 1293 Score = 101 bits (51), Expect = 1e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 252 ctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacgga 311 |||||||||||||||||||||||||||||||||||||||||| | ||||||| | Sbjct: 1035 ctggctctgcaggcggcggagcttgaaggaggagagcttctgcgacatgtccttgtggct 976 Query: 312 gggctcctcctcgaagcggatgtaggtgtag 342 |||| |||||||||||||||||||||||||| Sbjct: 975 gggcgcctcctcgaagcggatgtaggtgtag 945
>gb|AY109871.1| Zea mays CL636_3 mRNA sequence Length = 852 Score = 101 bits (51), Expect = 1e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 252 ctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacgga 311 |||||||||||||||||||||||||||||||||||||||||| | ||||||| | Sbjct: 578 ctggctctgcaggcggcggagcttgaaggaggagagcttctgcgacatgtccttgtggct 519 Query: 312 gggctcctcctcgaagcggatgtaggtgtag 342 |||| |||||||||||||||||||||||||| Sbjct: 518 gggcgcctcctcgaagcggatgtaggtgtag 488
>gb|AF326485.1|AF326485 Zea mays NOD26-like membrane integral protein ZmNIP2-2 mRNA, complete cds Length = 1387 Score = 99.6 bits (50), Expect = 6e-18 Identities = 85/96 (88%), Gaps = 3/96 (3%) Strand = Plus / Minus Query: 251 gctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacgg 310 |||||||||||| ||||||||||||||||||||||||| |||| | ||||||| ||| Sbjct: 966 gctggctctgcatgcggcggagcttgaaggaggagagcctctgcg---tgtccttggcgg 910 Query: 311 agggctcctcctcgaagcggatgtaggtgtagaccc 346 ||| |||||||||||||||||||||||||||||| Sbjct: 909 cgggggcctcctcgaagcggatgtaggtgtagaccc 874
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 93.7 bits (47), Expect = 4e-16 Identities = 64/69 (92%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 225 gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284 ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 6659691 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 6659747 Query: 285 gagcttctg 293 ||||||||| Sbjct: 6659748 gagcttctg 6659756 Score = 60.0 bits (30), Expect = 5e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346 |||||||||||||||||||||||||||||| Sbjct: 6659786 cctcctcgaagcggatgtaggtgtagaccc 6659815 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 104 aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143 |||| ||||||||||| || |||||||| || |||||||| Sbjct: 6659567 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 6659606
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 93.7 bits (47), Expect = 4e-16 Identities = 64/69 (92%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 225 gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284 ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 93817 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 93873 Query: 285 gagcttctg 293 ||||||||| Sbjct: 93874 gagcttctg 93882 Score = 60.0 bits (30), Expect = 5e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346 |||||||||||||||||||||||||||||| Sbjct: 93912 cctcctcgaagcggatgtaggtgtagaccc 93941 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 104 aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143 |||| ||||||||||| || |||||||| || |||||||| Sbjct: 93693 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 93732
>dbj|AK112022.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D01, full insert sequence Length = 1524 Score = 93.7 bits (47), Expect = 4e-16 Identities = 64/69 (92%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 225 gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284 ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 1054 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 998 Query: 285 gagcttctg 293 ||||||||| Sbjct: 997 gagcttctg 989 Score = 60.0 bits (30), Expect = 5e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346 |||||||||||||||||||||||||||||| Sbjct: 959 cctcctcgaagcggatgtaggtgtagaccc 930 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 104 aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143 |||| ||||||||||| || |||||||| || |||||||| Sbjct: 1178 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 1139
>dbj|AK111839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140M01, full insert sequence Length = 2364 Score = 93.7 bits (47), Expect = 4e-16 Identities = 64/69 (92%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 225 gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284 ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 1919 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 1863 Query: 285 gagcttctg 293 ||||||||| Sbjct: 1862 gagcttctg 1854 Score = 60.0 bits (30), Expect = 5e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346 |||||||||||||||||||||||||||||| Sbjct: 1824 cctcctcgaagcggatgtaggtgtagaccc 1795 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 104 aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143 |||| ||||||||||| || |||||||| || |||||||| Sbjct: 2043 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 2004
>dbj|AK104037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F07, full insert sequence Length = 1513 Score = 93.7 bits (47), Expect = 4e-16 Identities = 64/69 (92%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 225 gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284 ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 1043 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 987 Query: 285 gagcttctg 293 ||||||||| Sbjct: 986 gagcttctg 978 Score = 60.0 bits (30), Expect = 5e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346 |||||||||||||||||||||||||||||| Sbjct: 948 cctcctcgaagcggatgtaggtgtagaccc 919 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 104 aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143 |||| ||||||||||| || |||||||| || |||||||| Sbjct: 1167 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 1128
>dbj|AK072966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144P06, full insert sequence Length = 1447 Score = 93.7 bits (47), Expect = 4e-16 Identities = 64/69 (92%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 225 gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284 ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 1053 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 997 Query: 285 gagcttctg 293 ||||||||| Sbjct: 996 gagcttctg 988 Score = 60.0 bits (30), Expect = 5e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346 |||||||||||||||||||||||||||||| Sbjct: 958 cctcctcgaagcggatgtaggtgtagaccc 929 Score = 40.1 bits (20), Expect = 4.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 104 aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143 |||| ||||||||||| || |||||||| || |||||||| Sbjct: 1177 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 1138
>ref|XM_467762.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1410 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291 |||||| |||| |||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 983 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 924 Query: 292 tg 293 || Sbjct: 923 tg 922 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 tcctcgaagcggatgtaggtgtag 342 ||||||||||||||| |||||||| Sbjct: 899 tcctcgaagcggatgaaggtgtag 876
>dbj|AB222272.1| Oryza sativa (japonica cultivar-group) Lsi1 mRNA for NOD26-like major intrinsic protein, complete cds Length = 897 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291 |||||| |||| |||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 866 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 807 Query: 292 tg 293 || Sbjct: 806 tg 805 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 tcctcgaagcggatgtaggtgtag 342 ||||||||||||||| |||||||| Sbjct: 782 tcctcgaagcggatgaaggtgtag 759
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291 |||||| |||| |||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 31288001 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 31287942 Query: 292 tg 293 || Sbjct: 31287941 tg 31287940 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 tcctcgaagcggatgtaggtgtag 342 ||||||||||||||| |||||||| Sbjct: 31287917 tcctcgaagcggatgaaggtgtag 31287894
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1734_E02 Length = 168566 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291 |||||| |||| |||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 167844 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 167785 Query: 292 tg 293 || Sbjct: 167784 tg 167783 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 tcctcgaagcggatgtaggtgtag 342 ||||||||||||||| |||||||| Sbjct: 167760 tcctcgaagcggatgaaggtgtag 167737
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291 |||||| |||| |||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 57869 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 57810 Query: 292 tg 293 || Sbjct: 57809 tg 57808 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 tcctcgaagcggatgtaggtgtag 342 ||||||||||||||| |||||||| Sbjct: 57785 tcctcgaagcggatgaaggtgtag 57762
>dbj|AK069842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031E16, full insert sequence Length = 1409 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291 |||||| |||| |||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 982 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 923 Query: 292 tg 293 || Sbjct: 922 tg 921 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 tcctcgaagcggatgtaggtgtag 342 ||||||||||||||| |||||||| Sbjct: 898 tcctcgaagcggatgaaggtgtag 875
>gb|AF342810.1|AF342810 Zea mays NOD26-like membrane integral protein ZmNIP2-3 mRNA, complete cds Length = 1300 Score = 71.9 bits (36), Expect = 1e-09 Identities = 83/98 (84%), Gaps = 3/98 (3%) Strand = Plus / Minus Query: 252 ctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacg-- 309 ||||||||||| ||| ||||||||||||||||||||| |||| | | || |||| || Sbjct: 961 ctggctctgcatgcgtcggagcttgaaggaggagagcctctgggtgtcgggcttggcggc 902 Query: 310 -gagggctcctcctcgaagcggatgtaggtgtagaccc 346 | ||| |||||||||||||||||||||||||||||| Sbjct: 901 tgcgggggcctcctcgaagcggatgtaggtgtagaccc 864
>gb|AY111220.1| Zea mays CL26323_-1 mRNA sequence Length = 610 Score = 60.0 bits (30), Expect = 5e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 252 ctggctctgcaggcggcggagcttgaaggaggagagcttctg 293 ||||||||||| ||| ||||||||||||||||||||| |||| Sbjct: 323 ctggctctgcatgcgtcggagcttgaaggaggagagcctctg 364 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 320 cctcgaagcggatgtaggtgtagaccc 346 ||||||||||||||||||||||||||| Sbjct: 394 cctcgaagcggatgtaggtgtagaccc 420
>gb|AY111866.1| Zea mays CL26323_2 mRNA sequence Length = 454 Score = 56.0 bits (28), Expect = 8e-05 Identities = 74/89 (83%), Gaps = 4/89 (4%) Strand = Plus / Plus Query: 251 gctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacgg 310 |||||||||||| ||| ||||||||||||||||||||| |||| | ||||||| ||| Sbjct: 370 gctggctctgcatgcg-cggagcttgaaggaggagagcctctgcg---tgtccttggcgg 425 Query: 311 agggctcctcctcgaagcggatgtaggtg 339 ||||||||||||||||||||||| Sbjct: 426 cnnnnncctcctcgaagcggatgtaggtg 454
>emb|CT010430.6| Mouse DNA sequence from clone RP23-335P18 on chromosome 17, complete sequence Length = 156683 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 tccagtacttcttcagttcct 24 ||||||||||||||||||||| Sbjct: 154198 tccagtacttcttcagttcct 154178
>gb|AC098889.3| Mus musculus BAC clone RP23-122O10 from 10, complete sequence Length = 204770 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 caaaccaaatcaagagcatat 172 ||||||||||||||||||||| Sbjct: 90767 caaaccaaatcaagagcatat 90787
>emb|AL132768.15|HSJ469A13 Human DNA sequence from clone RP3-469A13 on chromosome 20 Contains the 3' end of a novel gene, the C20orf172 gene for chromosome 20 open reading frame 172, the 5' end of the NDRG3 gene for NDRG family member 3 (N-myc downstream-regulated gene 3, FLJ13556) and four CpG islands, complete sequence Length = 123829 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 ctggctctgcaggcggcggagcttg 276 ||||||||||||||||| ||||||| Sbjct: 44832 ctggctctgcaggcggcagagcttg 44808
>gb|AC151288.3| Mus musculus BAC clone RP23-340K6 from chromosome 17, complete sequence Length = 227155 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tccagtacttcttcagttcct 24 ||||||||||||||||||||| Sbjct: 83539 tccagtacttcttcagttcct 83559
>ref|XM_867827.1| PREDICTED: Bos taurus similar to microtubule associated serine/threonine kinase 2 (LOC615898), partial mRNA Length = 918 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tccagtacttcttcagttcc 23 |||||||||||||||||||| Sbjct: 439 tccagtacttcttcagttcc 420
>emb|AL138828.15| Human DNA sequence from clone RP11-472E5 on chromosome 6 Contains the 3' end of the PDE7B gene for phosphodiesterase 7B, the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 141540 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gctcgctggtacatggtaga 54 |||||||||||||||||||| Sbjct: 95645 gctcgctggtacatggtaga 95664
>gb|DQ167780.1| Drosophila orena putative period (per) gene, exons 3 through 5 and partial cds Length = 1783 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ttgaaggaggagagcttctg 293 |||||||||||||||||||| Sbjct: 699 ttgaaggaggagagcttctg 718
>dbj|AK147437.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1041I08 product:Hypothetical PX domain structure containing protein, full insert sequence Length = 7506 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ggcggagcttgaaggaggag 285 |||||||||||||||||||| Sbjct: 136 ggcggagcttgaaggaggag 117
>gb|AE005029.1| Halobacterium sp. NRC-1 section 60 of 170 of the complete genome Length = 12664 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 aagcggatgtaggtgtagac 344 |||||||||||||||||||| Sbjct: 12303 aagcggatgtaggtgtagac 12322
>emb|X01584.1|HHISH50 Halobacterium halobium transposable element ISH50 Length = 1060 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 aagcggatgtaggtgtagac 344 |||||||||||||||||||| Sbjct: 374 aagcggatgtaggtgtagac 355
>emb|CT963096.1| M.spretus DNA sequence from clone XX-CH35_391C2 on chromosome 7, complete sequence Length = 164625 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agttcctctggaacagagct 37 |||||||||||||||||||| Sbjct: 11009 agttcctctggaacagagct 11028
>ref|NM_172468.2| Mus musculus sorting nexin family member 30 (Snx30), mRNA Length = 7507 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ggcggagcttgaaggaggag 285 |||||||||||||||||||| Sbjct: 134 ggcggagcttgaaggaggag 115
>dbj|AP004979.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT44L05, TM0162b, complete sequence Length = 30916 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tacaaacatgtagatgcatggatc 82 |||||||||||||||| ||||||| Sbjct: 19592 tacaaacatgtagatgaatggatc 19615
>emb|AL831738.4| Mouse DNA sequence from clone RP23-451K12 on chromosome 4, complete sequence Length = 188894 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ggcggagcttgaaggaggag 285 |||||||||||||||||||| Sbjct: 2913 ggcggagcttgaaggaggag 2894
>emb|AL929112.6| Mouse DNA sequence from clone RP23-397G5 on chromosome 4, complete sequence Length = 179785 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aaatcaagagcatatatata 177 |||||||||||||||||||| Sbjct: 40595 aaatcaagagcatatatata 40576
>gb|AF016485.1| Halobacterium sp. NRC-1 plasmid pNRC100, complete sequence Length = 191346 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 aagcggatgtaggtgtagac 344 |||||||||||||||||||| Sbjct: 123388 aagcggatgtaggtgtagac 123407
>emb|Y08406.1|HSIGVH3DG H.sapiens mRNA for immunoglobulin, VH3 family, patient Del.G Length = 363 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tcgggtgtagtggcaccagc 208 |||||||||||||||||||| Sbjct: 298 tcgggtgtagtggcaccagc 317 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,494,459 Number of Sequences: 3902068 Number of extensions: 2494459 Number of successful extensions: 47774 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47628 Number of HSP's gapped (non-prelim): 139 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)