ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF326484.1|AF326484 Zea mays NOD26-like membrane integral pro... 101 1e-18
2gb|AY109871.1| Zea mays CL636_3 mRNA sequence 101 1e-18
3gb|AF326485.1|AF326485 Zea mays NOD26-like membrane integral pro... 100 6e-18
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
5dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
6dbj|AK112022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
7dbj|AK111839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
8dbj|AK104037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
9dbj|AK072966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
10ref|XM_467762.1| Oryza sativa (japonica cultivar-group), mRNA 76 8e-11
11dbj|AB222272.1| Oryza sativa (japonica cultivar-group) Lsi1 mRNA... 76 8e-11
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
13dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
14dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
15dbj|AK069842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
16gb|AF342810.1|AF342810 Zea mays NOD26-like membrane integral pro... 72 1e-09
17gb|AY111220.1| Zea mays CL26323_-1 mRNA sequence 60 5e-06
18gb|AY111866.1| Zea mays CL26323_2 mRNA sequence 56 8e-05
19emb|CT010430.6| Mouse DNA sequence from clone RP23-335P18 on chr... 42 1.2
20gb|AC098889.3| Mus musculus BAC clone RP23-122O10 from 10, compl... 42 1.2
21emb|AL132768.15|HSJ469A13 Human DNA sequence from clone RP3-469A... 42 1.2
22gb|AC151288.3| Mus musculus BAC clone RP23-340K6 from chromosome... 42 1.2
23ref|XM_867827.1| PREDICTED: Bos taurus similar to microtubule as... 40 4.6
24emb|AL138828.15| Human DNA sequence from clone RP11-472E5 on chr... 40 4.6
25gb|DQ167780.1| Drosophila orena putative period (per) gene, exon... 40 4.6
26dbj|AK147437.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 40 4.6
27gb|AE005029.1| Halobacterium sp. NRC-1 section 60 of 170 of the ... 40 4.6
28emb|X01584.1|HHISH50 Halobacterium halobium transposable element... 40 4.6
29emb|CT963096.1| M.spretus DNA sequence from clone XX-CH35_391C2 ... 40 4.6
30ref|NM_172468.2| Mus musculus sorting nexin family member 30 (Sn... 40 4.6
31dbj|AP004979.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 4.6
32emb|AL831738.4| Mouse DNA sequence from clone RP23-451K12 on chr... 40 4.6
33emb|AL929112.6| Mouse DNA sequence from clone RP23-397G5 on chro... 40 4.6
34gb|AF016485.1| Halobacterium sp. NRC-1 plasmid pNRC100, complete... 40 4.6
35emb|Y08406.1|HSIGVH3DG H.sapiens mRNA for immunoglobulin, VH3 fa... 40 4.6

>gb|AF326484.1|AF326484 Zea mays NOD26-like membrane integral protein ZmNIP2-1 mRNA, complete
            cds
          Length = 1293

 Score =  101 bits (51), Expect = 1e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                        
Query: 252  ctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacgga 311
            |||||||||||||||||||||||||||||||||||||||||| |    |||||||  |  
Sbjct: 1035 ctggctctgcaggcggcggagcttgaaggaggagagcttctgcgacatgtccttgtggct 976

                                           
Query: 312  gggctcctcctcgaagcggatgtaggtgtag 342
            |||| ||||||||||||||||||||||||||
Sbjct: 975  gggcgcctcctcgaagcggatgtaggtgtag 945



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>gb|AY109871.1| Zea mays CL636_3 mRNA sequence
          Length = 852

 Score =  101 bits (51), Expect = 1e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                       
Query: 252 ctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacgga 311
           |||||||||||||||||||||||||||||||||||||||||| |    |||||||  |  
Sbjct: 578 ctggctctgcaggcggcggagcttgaaggaggagagcttctgcgacatgtccttgtggct 519

                                          
Query: 312 gggctcctcctcgaagcggatgtaggtgtag 342
           |||| ||||||||||||||||||||||||||
Sbjct: 518 gggcgcctcctcgaagcggatgtaggtgtag 488



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>gb|AF326485.1|AF326485 Zea mays NOD26-like membrane integral protein ZmNIP2-2 mRNA,
           complete cds
          Length = 1387

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 85/96 (88%), Gaps = 3/96 (3%)
 Strand = Plus / Minus

                                                                       
Query: 251 gctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacgg 310
           |||||||||||| ||||||||||||||||||||||||| |||| |    ||||||| |||
Sbjct: 966 gctggctctgcatgcggcggagcttgaaggaggagagcctctgcg---tgtccttggcgg 910

                                               
Query: 311 agggctcctcctcgaagcggatgtaggtgtagaccc 346
            |||  ||||||||||||||||||||||||||||||
Sbjct: 909 cgggggcctcctcgaagcggatgtaggtgtagaccc 874



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 64/69 (92%), Gaps = 3/69 (4%)
 Strand = Plus / Plus

                                                                           
Query: 225     gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284
               ||||||||||||| |||||||||||   |||||||||| |||||||||||||||||||||
Sbjct: 6659691 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 6659747

                        
Query: 285     gagcttctg 293
               |||||||||
Sbjct: 6659748 gagcttctg 6659756



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                             
Query: 317     cctcctcgaagcggatgtaggtgtagaccc 346
               ||||||||||||||||||||||||||||||
Sbjct: 6659786 cctcctcgaagcggatgtaggtgtagaccc 6659815



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 104     aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143
               |||| ||||||||||| || |||||||| || ||||||||
Sbjct: 6659567 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 6659606



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>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0425F05
          Length = 162858

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 64/69 (92%), Gaps = 3/69 (4%)
 Strand = Plus / Plus

                                                                         
Query: 225   gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284
             ||||||||||||| |||||||||||   |||||||||| |||||||||||||||||||||
Sbjct: 93817 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 93873

                      
Query: 285   gagcttctg 293
             |||||||||
Sbjct: 93874 gagcttctg 93882



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                           
Query: 317   cctcctcgaagcggatgtaggtgtagaccc 346
             ||||||||||||||||||||||||||||||
Sbjct: 93912 cctcctcgaagcggatgtaggtgtagaccc 93941



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 104   aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143
             |||| ||||||||||| || |||||||| || ||||||||
Sbjct: 93693 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 93732



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>dbj|AK112022.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D01, full
            insert sequence
          Length = 1524

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 64/69 (92%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 225  gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284
            ||||||||||||| |||||||||||   |||||||||| |||||||||||||||||||||
Sbjct: 1054 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 998

                     
Query: 285  gagcttctg 293
            |||||||||
Sbjct: 997  gagcttctg 989



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346
           ||||||||||||||||||||||||||||||
Sbjct: 959 cctcctcgaagcggatgtaggtgtagaccc 930



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 104  aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143
            |||| ||||||||||| || |||||||| || ||||||||
Sbjct: 1178 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 1139



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>dbj|AK111839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140M01, full
            insert sequence
          Length = 2364

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 64/69 (92%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 225  gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284
            ||||||||||||| |||||||||||   |||||||||| |||||||||||||||||||||
Sbjct: 1919 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 1863

                     
Query: 285  gagcttctg 293
            |||||||||
Sbjct: 1862 gagcttctg 1854



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 317  cctcctcgaagcggatgtaggtgtagaccc 346
            ||||||||||||||||||||||||||||||
Sbjct: 1824 cctcctcgaagcggatgtaggtgtagaccc 1795



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 104  aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143
            |||| ||||||||||| || |||||||| || ||||||||
Sbjct: 2043 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 2004



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>dbj|AK104037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F07, full
            insert sequence
          Length = 1513

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 64/69 (92%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 225  gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284
            ||||||||||||| |||||||||||   |||||||||| |||||||||||||||||||||
Sbjct: 1043 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 987

                     
Query: 285  gagcttctg 293
            |||||||||
Sbjct: 986  gagcttctg 978



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346
           ||||||||||||||||||||||||||||||
Sbjct: 948 cctcctcgaagcggatgtaggtgtagaccc 919



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 104  aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143
            |||| ||||||||||| || |||||||| || ||||||||
Sbjct: 1167 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 1128



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>dbj|AK072966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144P06, full
            insert sequence
          Length = 1447

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 64/69 (92%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 225  gtcgaactcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggagga 284
            ||||||||||||| |||||||||||   |||||||||| |||||||||||||||||||||
Sbjct: 1053 gtcgaactcgtcggcggccatggac---tggctctgcaagcggcggagcttgaaggagga 997

                     
Query: 285  gagcttctg 293
            |||||||||
Sbjct: 996  gagcttctg 988



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 317 cctcctcgaagcggatgtaggtgtagaccc 346
           ||||||||||||||||||||||||||||||
Sbjct: 958 cctcctcgaagcggatgtaggtgtagaccc 929



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 104  aatgacttcccgcgcttgtacacgtgcgcacttacgtacg 143
            |||| ||||||||||| || |||||||| || ||||||||
Sbjct: 1177 aatggcttcccgcgctcgtgcacgtgcgtacgtacgtacg 1138



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>ref|XM_467762.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1410

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291
           |||||| |||| |||||| |||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 983 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 924

             
Query: 292 tg 293
           ||
Sbjct: 923 tg 922



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 tcctcgaagcggatgtaggtgtag 342
           ||||||||||||||| ||||||||
Sbjct: 899 tcctcgaagcggatgaaggtgtag 876



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>dbj|AB222272.1| Oryza sativa (japonica cultivar-group) Lsi1 mRNA for NOD26-like
           major intrinsic protein, complete cds
          Length = 897

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291
           |||||| |||| |||||| |||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 866 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 807

             
Query: 292 tg 293
           ||
Sbjct: 806 tg 805



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 tcctcgaagcggatgtaggtgtag 342
           ||||||||||||||| ||||||||
Sbjct: 782 tcctcgaagcggatgaaggtgtag 759



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 232      tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291
                |||||| |||| |||||| |||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 31288001 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 31287942

                  
Query: 292      tg 293
                ||
Sbjct: 31287941 tg 31287940



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 319      tcctcgaagcggatgtaggtgtag 342
                ||||||||||||||| ||||||||
Sbjct: 31287917 tcctcgaagcggatgaaggtgtag 31287894



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>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1734_E02
          Length = 168566

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                          
Query: 232    tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291
              |||||| |||| |||||| |||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 167844 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 167785

                
Query: 292    tg 293
              ||
Sbjct: 167784 tg 167783



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 319    tcctcgaagcggatgtaggtgtag 342
              ||||||||||||||| ||||||||
Sbjct: 167760 tcctcgaagcggatgaaggtgtag 167737



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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 232   tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291
             |||||| |||| |||||| |||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 57869 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 57810

               
Query: 292   tg 293
             ||
Sbjct: 57809 tg 57808



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 319   tcctcgaagcggatgtaggtgtag 342
             ||||||||||||||| ||||||||
Sbjct: 57785 tcctcgaagcggatgaaggtgtag 57762



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>dbj|AK069842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031E16, full
           insert sequence
          Length = 1409

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 232 tcgtcgacggccatggaccgctggctctgcaggcggcggagcttgaaggaggagagcttc 291
           |||||| |||| |||||| |||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 982 tcgtcggcggcgatggactgctggctccgcaagcggcgcagcttgaaggaggagagcttc 923

             
Query: 292 tg 293
           ||
Sbjct: 922 tg 921



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 tcctcgaagcggatgtaggtgtag 342
           ||||||||||||||| ||||||||
Sbjct: 898 tcctcgaagcggatgaaggtgtag 875



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>gb|AF342810.1|AF342810 Zea mays NOD26-like membrane integral protein ZmNIP2-3 mRNA,
           complete cds
          Length = 1300

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 83/98 (84%), Gaps = 3/98 (3%)
 Strand = Plus / Minus

                                                                       
Query: 252 ctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacg-- 309
           ||||||||||| ||| ||||||||||||||||||||| |||| | | ||  |||| ||  
Sbjct: 961 ctggctctgcatgcgtcggagcttgaaggaggagagcctctgggtgtcgggcttggcggc 902

                                                 
Query: 310 -gagggctcctcctcgaagcggatgtaggtgtagaccc 346
            | |||  ||||||||||||||||||||||||||||||
Sbjct: 901 tgcgggggcctcctcgaagcggatgtaggtgtagaccc 864



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>gb|AY111220.1| Zea mays CL26323_-1 mRNA sequence
          Length = 610

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 252 ctggctctgcaggcggcggagcttgaaggaggagagcttctg 293
           ||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct: 323 ctggctctgcatgcgtcggagcttgaaggaggagagcctctg 364



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 320 cctcgaagcggatgtaggtgtagaccc 346
           |||||||||||||||||||||||||||
Sbjct: 394 cctcgaagcggatgtaggtgtagaccc 420



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>gb|AY111866.1| Zea mays CL26323_2 mRNA sequence
          Length = 454

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 74/89 (83%), Gaps = 4/89 (4%)
 Strand = Plus / Plus

                                                                       
Query: 251 gctggctctgcaggcggcggagcttgaaggaggagagcttctgtgggccgtccttgacgg 310
           |||||||||||| ||| ||||||||||||||||||||| |||| |    ||||||| |||
Sbjct: 370 gctggctctgcatgcg-cggagcttgaaggaggagagcctctgcg---tgtccttggcgg 425

                                        
Query: 311 agggctcctcctcgaagcggatgtaggtg 339
                 |||||||||||||||||||||||
Sbjct: 426 cnnnnncctcctcgaagcggatgtaggtg 454



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>emb|CT010430.6| Mouse DNA sequence from clone RP23-335P18 on chromosome 17, complete
              sequence
          Length = 156683

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      tccagtacttcttcagttcct 24
              |||||||||||||||||||||
Sbjct: 154198 tccagtacttcttcagttcct 154178



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>gb|AC098889.3| Mus musculus BAC clone RP23-122O10 from 10, complete sequence
          Length = 204770

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 152   caaaccaaatcaagagcatat 172
             |||||||||||||||||||||
Sbjct: 90767 caaaccaaatcaagagcatat 90787



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>emb|AL132768.15|HSJ469A13 Human DNA sequence from clone RP3-469A13 on chromosome 20 Contains the
             3' end of a novel gene, the C20orf172 gene for chromosome
             20 open reading frame 172, the 5' end of the NDRG3 gene
             for NDRG family member 3 (N-myc downstream-regulated gene
             3, FLJ13556) and four CpG islands, complete sequence
          Length = 123829

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 252   ctggctctgcaggcggcggagcttg 276
             ||||||||||||||||| |||||||
Sbjct: 44832 ctggctctgcaggcggcagagcttg 44808



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>gb|AC151288.3| Mus musculus BAC clone RP23-340K6 from chromosome 17, complete sequence
          Length = 227155

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     tccagtacttcttcagttcct 24
             |||||||||||||||||||||
Sbjct: 83539 tccagtacttcttcagttcct 83559



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>ref|XM_867827.1| PREDICTED: Bos taurus similar to microtubule associated
           serine/threonine kinase 2 (LOC615898), partial mRNA
          Length = 918

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   tccagtacttcttcagttcc 23
           ||||||||||||||||||||
Sbjct: 439 tccagtacttcttcagttcc 420



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>emb|AL138828.15| Human DNA sequence from clone RP11-472E5 on chromosome 6 Contains the
             3' end of the PDE7B gene for phosphodiesterase 7B, the 5'
             end of a novel gene and the 3' end of a novel gene,
             complete sequence
          Length = 141540

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    gctcgctggtacatggtaga 54
             ||||||||||||||||||||
Sbjct: 95645 gctcgctggtacatggtaga 95664



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>gb|DQ167780.1| Drosophila orena putative period (per) gene, exons 3 through 5 and
           partial cds
          Length = 1783

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 274 ttgaaggaggagagcttctg 293
           ||||||||||||||||||||
Sbjct: 699 ttgaaggaggagagcttctg 718



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>dbj|AK147437.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
           full-length enriched library, clone:M5C1041I08
           product:Hypothetical PX domain structure containing
           protein, full insert sequence
          Length = 7506

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 ggcggagcttgaaggaggag 285
           ||||||||||||||||||||
Sbjct: 136 ggcggagcttgaaggaggag 117



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>gb|AE005029.1| Halobacterium sp. NRC-1 section 60 of 170 of the complete genome
          Length = 12664

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   aagcggatgtaggtgtagac 344
             ||||||||||||||||||||
Sbjct: 12303 aagcggatgtaggtgtagac 12322



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>emb|X01584.1|HHISH50 Halobacterium halobium transposable element ISH50
          Length = 1060

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 325 aagcggatgtaggtgtagac 344
           ||||||||||||||||||||
Sbjct: 374 aagcggatgtaggtgtagac 355



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>emb|CT963096.1| M.spretus DNA sequence from clone XX-CH35_391C2 on chromosome 7,
             complete sequence
          Length = 164625

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    agttcctctggaacagagct 37
             ||||||||||||||||||||
Sbjct: 11009 agttcctctggaacagagct 11028



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>ref|NM_172468.2| Mus musculus sorting nexin family member 30 (Snx30), mRNA
          Length = 7507

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 ggcggagcttgaaggaggag 285
           ||||||||||||||||||||
Sbjct: 134 ggcggagcttgaaggaggag 115



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>dbj|AP004979.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT44L05, TM0162b,
             complete sequence
          Length = 30916

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    tacaaacatgtagatgcatggatc 82
             |||||||||||||||| |||||||
Sbjct: 19592 tacaaacatgtagatgaatggatc 19615



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>emb|AL831738.4| Mouse DNA sequence from clone RP23-451K12 on chromosome 4, complete
            sequence
          Length = 188894

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ggcggagcttgaaggaggag 285
            ||||||||||||||||||||
Sbjct: 2913 ggcggagcttgaaggaggag 2894



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>emb|AL929112.6| Mouse DNA sequence from clone RP23-397G5 on chromosome 4, complete
             sequence
          Length = 179785

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aaatcaagagcatatatata 177
             ||||||||||||||||||||
Sbjct: 40595 aaatcaagagcatatatata 40576



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>gb|AF016485.1| Halobacterium sp. NRC-1 plasmid pNRC100, complete sequence
          Length = 191346

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    aagcggatgtaggtgtagac 344
              ||||||||||||||||||||
Sbjct: 123388 aagcggatgtaggtgtagac 123407



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>emb|Y08406.1|HSIGVH3DG H.sapiens mRNA for immunoglobulin, VH3 family, patient Del.G
          Length = 363

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 tcgggtgtagtggcaccagc 208
           ||||||||||||||||||||
Sbjct: 298 tcgggtgtagtggcaccagc 317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,494,459
Number of Sequences: 3902068
Number of extensions: 2494459
Number of successful extensions: 47774
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47628
Number of HSP's gapped (non-prelim): 139
length of query: 346
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 324
effective length of database: 17,147,199,772
effective search space: 5555692726128
effective search space used: 5555692726128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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