>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 306     gctggtggtggcggtgaggggcggcgaggcc 336
               |||||||||||||||||| ||||||| ||||
Sbjct: 2327890 gctggtggtggcggtgagcggcggcgtggcc 2327860

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 154      attaatcatacatcaccatgg 174
                |||||||||||||||||||||
Sbjct: 14457963 attaatcatacatcaccatgg 14457983

>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0673E01
          Length = 125909

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 154   attaatcatacatcaccatgg 174
             |||||||||||||||||||||
Sbjct: 78294 attaatcatacatcaccatgg 78314

>emb|BX255926.10| Mouse DNA sequence from clone RP23-440M18 on chromosome 11, complete
             sequence
          Length = 73844

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 256   gagggcttgccctccaggagg 276
             |||||||||||||||||||||
Sbjct: 57021 gagggcttgccctccaggagg 57001

>emb|AL606756.17| Mouse DNA sequence from clone RP23-265O19 on chromosome 3, complete
             sequence
          Length = 193976

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 173   ggagcggagcagagcagactagagcagag 201
             ||||||||||||||||||  |||||||||
Sbjct: 20269 ggagcggagcagagcagagcagagcagag 20241

>emb|AL590969.12| Mouse DNA sequence from clone RP23-281C18 on chromosome 11, complete
              sequence
          Length = 250353

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 256    gagggcttgccctccaggagg 276
              |||||||||||||||||||||
Sbjct: 229353 gagggcttgccctccaggagg 229373

>emb|AJ428456.1|TSO428456 Taenia solium spliced leader sequence and spliced leader mini-exon
          Length = 2040

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 173 ggagcggagcagagcagactagagcagag 201
           ||||||||||||||||||  |||||||||
Sbjct: 443 ggagcggagcagagcagagcagagcagag 415

>gb|AE017131.1| Yersinia pestis biovar Medievalis str. 91001 section 5 of 16 of the
              complete genome
          Length = 291847

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    gttgctggtggtggcggtga 322
              ||||||||||||||||||||
Sbjct: 262364 gttgctggtggtggcggtga 262345

>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 303     gttgctggtggtggcggtga 322
               ||||||||||||||||||||
Sbjct: 3197083 gttgctggtggtggcggtga 3197064

>gb|AC122242.2| Mus musculus BAC clone RP23-147P2 from chromosome 13, complete sequence
          Length = 208096

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 185    agcagactagagcagaggaagcag 208
              ||||||||||||||||| ||||||
Sbjct: 191132 agcagactagagcagagtaagcag 191109

>gb|AY301231.1| Citrobacter freundii strain MISC250 GroEL protein (groEL) gene,
            partial cds
          Length = 1146

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ggtgtggttgctggtggtgg 316
            ||||||||||||||||||||
Sbjct: 1120 ggtgtggttgctggtggtgg 1139

>gb|AC121886.2| Mus musculus BAC clone RP24-141K3 from 18, complete sequence
          Length = 140819

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ttgggggtgggcactgaggg 260
             ||||||||||||||||||||
Sbjct: 57446 ttgggggtgggcactgaggg 57427

>gb|AC137831.27| Medicago truncatula clone mth2-34o21, complete sequence
          Length = 117693

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   ggaagcagaggcatgaggct 220
             ||||||||||||||||||||
Sbjct: 48589 ggaagcagaggcatgaggct 48570

>gb|AC133213.2| Mus musculus chromosome UL clone RP23-60I24, complete sequence
          Length = 150628

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   agagcagaggaagcagaggc 212
             ||||||||||||||||||||
Sbjct: 40236 agagcagaggaagcagaggc 40255

>emb|Z99127.2|HS102G20 Human DNA sequence from clone RP1-102G20 on chromosome 1q24-25 Contains
             a novel pseudogene, two novel genes, a ribosomal protein
             S26 (RPS26) pseudogenem, the 3' end of the gene for
             expressed in hematopoietic cells (heart, liver) (HLL), the
             gene for Siah-interacting protein (SIP), the 3' end of the
             MRPS14 gene for mitochondrial ribosomal protein S14 and a
             CpG island, complete sequence
          Length = 124421

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 237   gttgttgggggtgggcactgaggg 260
             ||||||||||||||| ||||||||
Sbjct: 94673 gttgttgggggtggggactgaggg 94650

>emb|AL161736.33| Human DNA sequence from clone RP11-421E17 on chromosome 1 Contains the 3'
              end of the FNBP2 gene for formin binding protein 2 and a
              RAP1, GTP-GDP dissociation stimulator 1 (RAP1GDS1)
              pseudogene, complete sequence
          Length = 159474

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    gttgttgggggtgggcactg 256
              ||||||||||||||||||||
Sbjct: 103520 gttgttgggggtgggcactg 103539

>emb|AL135842.15| Human DNA sequence from clone RP1-91G5 on chromosome 1q21.1-21.3 Contains
              the 3' end of a novel gene, a novel gene, a high mobility
              group nucleosomal binding domain 3 (HMGN3) pseudogene, the
              C1orf10 gene for chromosome 1 open reading frame 10, the
              SPRL5A for small proline rich-like (epidermal
              differentiation complex) 5A and the NICE-1 gene for NICE-1
              protein, complete sequence
          Length = 188285

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 265    ccctccaggaggagctgcctccgg 288
              ||||||||||||||||||| ||||
Sbjct: 171689 ccctccaggaggagctgccaccgg 171712

>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 303     gttgctggtggtggcggtga 322
               ||||||||||||||||||||
Sbjct: 1576772 gttgctggtggtggcggtga 1576791

>emb|AJ414147.1| Yersinia pestis strain CO92 complete genome; segment 7/20
          Length = 199050

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    gttgctggtggtggcggtga 322
              ||||||||||||||||||||
Sbjct: 121640 gttgctggtggtggcggtga 121659

>dbj|AB198717.1| Solanum tuberosum StrbohD mRNA for  NADPH oxidase, complete cds
          Length = 2580

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 188 agactagagcagaggaagcagagg 211
           |||||| |||||||||||||||||
Sbjct: 146 agactaaagcagaggaagcagagg 169

>gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, complete sequence
          Length = 141820

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    gagcagaggaagcagaggcatgag 217
              ||||||||||||||||| ||||||
Sbjct: 111268 gagcagaggaagcagagacatgag 111291

>gb|AC093421.2| Homo sapiens chromosome 1 clone RP11-337M6, complete sequence
          Length = 183974

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tttcatcattcccatatatt 41
             ||||||||||||||||||||
Sbjct: 69108 tttcatcattcccatatatt 69127

>gb|AC027808.9| Homo sapiens chromosome 15, clone RP11-351M8, complete sequence
          Length = 221936

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 239    tgttgggggtgggcactgagggct 262
              |||||||||||||||| |||||||
Sbjct: 173734 tgttgggggtgggcaccgagggct 173757

>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   agagcagaggaagcagaggc 212
             ||||||||||||||||||||
Sbjct: 88943 agagcagaggaagcagaggc 88924

>emb|BX119996.7| Mouse DNA sequence from clone RP23-352G15 on chromosome X, complete
             sequence
          Length = 191635

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   agagcagaggaagcagaggc 212
             ||||||||||||||||||||
Sbjct: 36238 agagcagaggaagcagaggc 36257

>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
             BACR25A06, complete sequence
          Length = 170163

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 178   ggagcagagcagactagagcagag 201
             |||||||||||||| |||||||||
Sbjct: 94315 ggagcagagcagaccagagcagag 94292

>gb|AC109333.28| Homo sapiens chromosome 17, clone RP11-115H24, complete sequence
          Length = 181825

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   ttgggggtgggcactgaggg 260
             ||||||||||||||||||||
Sbjct: 65165 ttgggggtgggcactgaggg 65184

>gb|AF493433.1| Casasia clusiifolia internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 611

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 321 gaggggcggcgaggccttgccctc 344
           ||||||||||||||||| ||||||
Sbjct: 56  gaggggcggcgaggcctcgccctc 79

>emb|BX679673.6| Mouse DNA sequence from clone RP23-252K15 on chromosome X, complete
             sequence
          Length = 81270

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gtacagtacaatacaacaca 127
             ||||||||||||||||||||
Sbjct: 65119 gtacagtacaatacaacaca 65138

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 294     gtcggtgtggttgctggtggtggcggtg 321
               |||||| |||||| ||||||||||||||
Sbjct: 1082154 gtcggtctggttggtggtggtggcggtg 1082181

>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the complete
              sequence
          Length = 228284

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 178    ggagcagagcagactagagcagag 201
              |||||||||||||| |||||||||
Sbjct: 100156 ggagcagagcagaccagagcagag 100133

>emb|AL133502.4|CNS01DVA Human chromosome 14 DNA sequence BAC R-180L10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173292

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    ggcagagatacaaactggta 110
             ||||||||||||||||||||
Sbjct: 29839 ggcagagatacaaactggta 29820

>emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on chromosome 2, complete
             sequence
          Length = 178965

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   ggggtgggcactgagggctt 263
             ||||||||||||||||||||
Sbjct: 67679 ggggtgggcactgagggctt 67660

>dbj|AB008150.1| Erwinia herbicola gene for  GroES protein homologue, GroEL protein
            homologue, partial cds
          Length = 1942

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ggtgtggttgctggtggtgg 316
            ||||||||||||||||||||
Sbjct: 1545 ggtgtggttgctggtggtgg 1564


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,519,376
Number of Sequences: 3902068
Number of extensions: 3519376
Number of successful extensions: 84691
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84509
Number of HSP's gapped (non-prelim): 181
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)