ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC077004.1| Xenopus tropicalis MGC89650 protein, mRNA (cDNA c... 42 0.24
2ref|NM_001005082.1| Xenopus tropicalis MGC89650 protein (MGC8965... 42 0.24
3gb|AC097023.6| Rattus norvegicus BAC CH230-35L12 (Children's Hos... 40 0.93
4emb|CR385065.21| Zebrafish DNA sequence from clone CH211-232F6 i... 40 0.93
5emb|AL604063.4| Mouse DNA sequence from clone RP23-467J12 on chr... 40 0.93
6emb|CR394527.6| Zebrafish DNA sequence from clone CH211-254P11 i... 40 0.93
7gb|AC114285.2| Homo sapiens chromosome 5 clone CTD-2335A14, comp... 40 0.93
8ref|NM_029788.2| Mus musculus RIKEN cDNA 0610013E23 gene (061001... 40 0.93
9dbj|AK036401.1| Mus musculus adult male bone cDNA, RIKEN full-le... 40 0.93
10dbj|AK035354.1| Mus musculus adult male urinary bladder cDNA, RI... 40 0.93
11emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 i... 40 0.93
12emb|CR854980.8| Zebrafish DNA sequence from clone DKEY-89J23 in ... 40 0.93
13gb|BC037289.1| Homo sapiens cell division cycle 2-like 6 (CDK8-l... 38 3.7
14gb|AC154202.2| Mus musculus BAC clone RP24-386E14 from chromosom... 38 3.7
15ref|NM_001033939.2| Xenopus tropicalis hypothetical protein LOC6... 38 3.7
16gb|BC061395.1| Xenopus tropicalis SH3-domain GRB2-like 1, mRNA (... 38 3.7
17gb|AC119985.6| Mus musculus chromosome 5, clone RP24-502C10, com... 38 3.7
18gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, com... 38 3.7
19gb|AC126459.3| Mus musculus BAC clone RP23-181A8 from chromosome... 38 3.7
20gb|AC139569.3| Mus musculus BAC clone RP24-340F13 from chromosom... 38 3.7
21emb|CR382377.10| Zebrafish DNA sequence from clone DKEY-238I13 i... 38 3.7
22gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987... 38 3.7
23emb|AL122055.1|HSM801287 Homo sapiens mRNA; cDNA DKFZp434M058 (f... 38 3.7
24emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on ch... 38 3.7
25emb|AL023733.1|HSB58F5 Human DNA sequence from clone SC22CB-58F5... 38 3.7
26emb|CR759788.7| Zebrafish DNA sequence from clone CH211-153F13, ... 38 3.7
27gb|AC128682.5| Homo sapiens 3 BAC RP11-143D13 (Roswell Park Canc... 38 3.7
28dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 38 3.7
29dbj|AB028951.2| Homo sapiens mRNA for KIAA1028 protein, partial cds 38 3.7
30gb|AC025263.22| Homo sapiens 12 BAC RP11-588G21 (Roswell Park Ca... 38 3.7
31dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, ... 38 3.7
32ref|NM_015076.3| Homo sapiens cell division cycle 2-like 6 (CDK8... 38 3.7
33gb|AC154651.2| Mus musculus BAC clone RP24-261K2 from chromosome... 38 3.7
34ref|NM_203795.1| Xenopus tropicalis SH3-domain GRB2-like 1 (MGC7... 38 3.7
35gb|AC007347.3|AC007347 Homo sapiens chromosome 16 clone RPCI-11_... 38 3.7
36emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 i... 38 3.7
37emb|BX511004.9| Zebrafish DNA sequence from clone RP71-45K5 in l... 38 3.7
38emb|CR759992.3| Xenopus tropicalis finished cDNA, clone TNeu119k11 38 3.7
39emb|AL161851.4|CNS01RHM Human chromosome 14 DNA sequence BAC R-1... 38 3.7
40gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence 38 3.7
41dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 3.7
42dbj|AP003395.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 3.7
43emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, c... 38 3.7
44emb|AL929310.8| Zebrafish DNA sequence from clone CH211-55A7, co... 38 3.7
45emb|AL671275.11| Mouse DNA sequence from clone RP23-344J21 on ch... 38 3.7
46emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chr... 38 3.7 
>gb|BC077004.1| Xenopus tropicalis MGC89650 protein, mRNA (cDNA clone MGC:89650
           IMAGE:7025896), complete cds
          Length = 730

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 1   ggaaaagcagattaattttcattttgttc 29
           |||||||||||||||| |||| |||||||
Sbjct: 537 ggaaaagcagattaatcttcagtttgttc 509
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>ref|NM_001005082.1| Xenopus tropicalis MGC89650 protein (MGC89650), mRNA
          Length = 730

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 1   ggaaaagcagattaattttcattttgttc 29
           |||||||||||||||| |||| |||||||
Sbjct: 537 ggaaaagcagattaatcttcagtttgttc 509
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>gb|AC097023.6| Rattus norvegicus BAC CH230-35L12 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228433

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      agattaattttcattttgtt 28
              ||||||||||||||||||||
Sbjct: 210103 agattaattttcattttgtt 210122
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>emb|CR385065.21| Zebrafish DNA sequence from clone CH211-232F6 in linkage group 6,
             complete sequence
          Length = 194459

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    gattaattttcattttgttc 29
             ||||||||||||||||||||
Sbjct: 63005 gattaattttcattttgttc 62986
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>emb|AL604063.4| Mouse DNA sequence from clone RP23-467J12 on chromosome 11, complete
             sequence
          Length = 146759

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    ttttcattttgttcgagattgggt 39
             |||||||||| |||||||||||||
Sbjct: 17857 ttttcatttttttcgagattgggt 17880
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>emb|CR394527.6| Zebrafish DNA sequence from clone CH211-254P11 in linkage group 5,
            complete sequence
          Length = 75514

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    ggaaaagcagattaattttc 20
            ||||||||||||||||||||
Sbjct: 4424 ggaaaagcagattaattttc 4405
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>gb|AC114285.2| Homo sapiens chromosome 5 clone CTD-2335A14, complete sequence
          Length = 122885

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     aaaagcagattaattttcat 22
             ||||||||||||||||||||
Sbjct: 72498 aaaagcagattaattttcat 72479
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>ref|NM_029788.2| Mus musculus RIKEN cDNA 0610013E23 gene (0610013E23Rik), mRNA
          Length = 4434

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 16   ttttcattttgttcgagattgggt 39
            |||||||||| |||||||||||||
Sbjct: 3724 ttttcatttttttcgagattgggt 3747
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>dbj|AK036401.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830005K24 product:similar to PTD016
            PROTEIN [Homo sapiens], full insert sequence
          Length = 4434

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 16   ttttcattttgttcgagattgggt 39
            |||||||||| |||||||||||||
Sbjct: 3724 ttttcatttttttcgagattgggt 3747
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>dbj|AK035354.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530021K09
           product:unclassifiable, full insert sequence
          Length = 2668

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 16  ttttcattttgttcgagattgggt 39
           |||||||||| |||||||||||||
Sbjct: 508 ttttcatttttttcgagattgggt 485
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>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
              complete sequence
          Length = 181060

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     gattaattttcattttgttc 29
              ||||||||||||||||||||
Sbjct: 154675 gattaattttcattttgttc 154694
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>emb|CR854980.8| Zebrafish DNA sequence from clone DKEY-89J23 in linkage group 5,
             complete sequence
          Length = 82050

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggaaaagcagattaattttc 20
             ||||||||||||||||||||
Sbjct: 44246 ggaaaagcagattaattttc 44265
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>gb|BC037289.1| Homo sapiens cell division cycle 2-like 6 (CDK8-like), mRNA (cDNA
            clone MGC:33263 IMAGE:5266531), complete cds
          Length = 3196

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    aaaagcagattaattttca 21
            |||||||||||||||||||
Sbjct: 2638 aaaagcagattaattttca 2620
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>gb|AC154202.2| Mus musculus BAC clone RP24-386E14 from chromosome 14, complete sequence
          Length = 147957

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 63     tattaacagaagctcccacacac 85
              |||| ||||||||||||||||||
Sbjct: 116812 tattgacagaagctcccacacac 116790
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>ref|NM_001033939.2| Xenopus tropicalis hypothetical protein LOC619364 (LOC619364), mRNA
          Length = 2165

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   gattaattttcattttgtt 28
            |||||||||||||||||||
Sbjct: 1874 gattaattttcattttgtt 1856
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>gb|BC061395.1| Xenopus tropicalis SH3-domain GRB2-like 1, mRNA (cDNA clone MGC:75976
            IMAGE:5384280), complete cds
          Length = 2015

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   gattaattttcattttgtt 28
            |||||||||||||||||||
Sbjct: 1882 gattaattttcattttgtt 1864
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>gb|AC119985.6| Mus musculus chromosome 5, clone RP24-502C10, complete sequence
          Length = 134739

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    gattaattttcattttgtt 28
             |||||||||||||||||||
Sbjct: 18712 gattaattttcattttgtt 18730
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>gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, complete sequence
          Length = 205237

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    gattaattttcattttgtt 28
             |||||||||||||||||||
Sbjct: 34482 gattaattttcattttgtt 34464
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>gb|AC126459.3| Mus musculus BAC clone RP23-181A8 from chromosome 9, complete sequence
          Length = 217068

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      aaagcagattaattttcat 22
              |||||||||||||||||||
Sbjct: 123793 aaagcagattaattttcat 123811
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>gb|AC139569.3| Mus musculus BAC clone RP24-340F13 from chromosome 14, complete
             sequence
          Length = 173736

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 63    tattaacagaagctcccacacac 85
             |||| ||||||||||||||||||
Sbjct: 39872 tattgacagaagctcccacacac 39850
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>emb|CR382377.10| Zebrafish DNA sequence from clone DKEY-238I13 in linkage group 17,
             complete sequence
          Length = 105441

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 12    ttaattttcattttgttcgagat 34
             |||||||||||||||||| ||||
Sbjct: 75263 ttaattttcattttgttccagat 75241
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>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4  ~complete
             genomic sequence, complete sequence
          Length = 174826

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    attaattttcattttgttc 29
             |||||||||||||||||||
Sbjct: 62819 attaattttcattttgttc 62837
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>emb|AL122055.1|HSM801287 Homo sapiens mRNA; cDNA DKFZp434M058 (from clone DKFZp434M058)
          Length = 5736

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    aaaagcagattaattttca 21
            |||||||||||||||||||
Sbjct: 2199 aaaagcagattaattttca 2181
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>emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on chromosome 6 Contains the
             3' part of gene KIAA1028, a pseudogene similar to
             ribosomal protein S19 (RPS19), a pseudogene similar to
             protein phosphatases, a ribosomal protein S20 (RPS20)
             pseudogene and a CpG island, complete sequence
          Length = 189098

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     aaaagcagattaattttca 21
             |||||||||||||||||||
Sbjct: 99632 aaaagcagattaattttca 99650
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>emb|AL023733.1|HSB58F5 Human DNA sequence from clone SC22CB-58F5 on chromosome
            22q13.2-13.33, complete sequence
          Length = 5545

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 16   ttttcattttgttcgagat 34
            |||||||||||||||||||
Sbjct: 1968 ttttcattttgttcgagat 1986
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>emb|CR759788.7| Zebrafish DNA sequence from clone CH211-153F13, complete sequence
          Length = 197075

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 5     aagcagattaattttcattttgt 27
             |||||||| ||||||||||||||
Sbjct: 69979 aagcagatgaattttcattttgt 70001
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>gb|AC128682.5| Homo sapiens 3 BAC RP11-143D13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 42730

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     aaaagcagattaattttca 21
             |||||||||||||||||||
Sbjct: 40200 aaaagcagattaattttca 40218
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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 11      attaattttcattttgttc 29
               |||||||||||||||||||
Sbjct: 1092475 attaattttcattttgttc 1092493
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>dbj|AB028951.2| Homo sapiens mRNA for KIAA1028 protein, partial cds
          Length = 6063

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    aaaagcagattaattttca 21
            |||||||||||||||||||
Sbjct: 2561 aaaagcagattaattttca 2543
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>gb|AC025263.22| Homo sapiens 12 BAC RP11-588G21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 182226

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      ggaaaagcagattaatttt 19
              |||||||||||||||||||
Sbjct: 120367 ggaaaagcagattaatttt 120385
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>dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBa, evx
             homologue on hoxBa
          Length = 235883

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     cagattaattttcattttg 26
             |||||||||||||||||||
Sbjct: 36121 cagattaattttcattttg 36139
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>ref|NM_015076.3| Homo sapiens cell division cycle 2-like 6 (CDK8-like) (CDC2L6), mRNA
          Length = 6139

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    aaaagcagattaattttca 21
            |||||||||||||||||||
Sbjct: 2637 aaaagcagattaattttca 2619
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>gb|AC154651.2| Mus musculus BAC clone RP24-261K2 from chromosome 9, complete sequence
          Length = 173354

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     gattaattttcattttgtt 28
              |||||||||||||||||||
Sbjct: 120188 gattaattttcattttgtt 120206
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>ref|NM_203795.1| Xenopus tropicalis SH3-domain GRB2-like 1 (MGC75976), mRNA
          Length = 2015

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   gattaattttcattttgtt 28
            |||||||||||||||||||
Sbjct: 1882 gattaattttcattttgtt 1864
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>gb|AC007347.3|AC007347 Homo sapiens chromosome 16 clone RPCI-11_488J11, complete sequence
          Length = 167025

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 3     aaaagcagattaattttcatttt 25
             ||||||| |||||||||||||||
Sbjct: 80367 aaaagcaaattaattttcatttt 80389
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>emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 in linkage group 14,
              complete sequence
          Length = 221928

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      cagattaattttcattttg 26
              |||||||||||||||||||
Sbjct: 111993 cagattaattttcattttg 111975
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>emb|BX511004.9| Zebrafish DNA sequence from clone RP71-45K5 in linkage group 19,
             complete sequence
          Length = 168626

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    attaattttcattttgttc 29
             |||||||||||||||||||
Sbjct: 73809 attaattttcattttgttc 73827
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>emb|CR759992.3| Xenopus tropicalis finished cDNA, clone TNeu119k11
          Length = 2165

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   gattaattttcattttgtt 28
            |||||||||||||||||||
Sbjct: 1874 gattaattttcattttgtt 1856
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>emb|AL161851.4|CNS01RHM Human chromosome 14 DNA sequence BAC R-1078I14 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 187732

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     aacataagcagctttgtga 61
              |||||||||||||||||||
Sbjct: 128605 aacataagcagctttgtga 128587
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>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence
          Length = 405672

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      agattaattttcattttgt 27
              |||||||||||||||||||
Sbjct: 102219 agattaattttcattttgt 102201
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>dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-334E6, complete
              sequences
          Length = 191362

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      aaagcagattaattttcat 22
              |||||||||||||||||||
Sbjct: 190051 aaagcagattaattttcat 190069
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>dbj|AP003395.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-305N23, complete
             sequences
          Length = 205596

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     aaagcagattaattttcat 22
             |||||||||||||||||||
Sbjct: 70063 aaagcagattaattttcat 70081
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>emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, complete sequence
          Length = 189040

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    gattaattttcattttgtt 28
             |||||||||||||||||||
Sbjct: 34804 gattaattttcattttgtt 34786
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>emb|AL929310.8| Zebrafish DNA sequence from clone CH211-55A7, complete sequence
          Length = 156634

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    gattaattttcattttgtt 28
             |||||||||||||||||||
Sbjct: 91491 gattaattttcattttgtt 91473
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>emb|AL671275.11| Mouse DNA sequence from clone RP23-344J21 on chromosome X, complete
              sequence
          Length = 160338

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     aacagaagctcccacacac 85
              |||||||||||||||||||
Sbjct: 117177 aacagaagctcccacacac 117159
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>emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chromosome 4, complete
              sequence
          Length = 177314

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 3      aaaagcagattaattttcatttt 25
              ||||||||||| |||||||||||
Sbjct: 165264 aaaagcagattcattttcatttt 165242


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,166,869
Number of Sequences: 3902068
Number of extensions: 1166869
Number of successful extensions: 97317
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97223
Number of HSP's gapped (non-prelim): 94
length of query: 87
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 66
effective length of database: 17,151,101,840
effective search space: 1131972721440
effective search space used: 1131972721440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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