ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB063249.1| Hordeum vulgare DMAS2 mRNA for deoxymugineic aci... 276 2e-71
2dbj|AB063248.1| Hordeum vulgare DMAS1 mRNA for deoxymugineic aci... 262 3e-67
3gb|AY364467.1| Triticum monococcum cytosolic glutathione reducta... 119 3e-24
4emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chro... 44 0.14
5gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, comp... 42 0.56
6gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, comp... 42 0.56
7emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chr... 40 2.2
8gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome... 40 2.2
9gb|AF539999.1| Mamestra configurata nucleopolyhedrovirus A 90/4,... 38 8.8
10gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's ... 38 8.8
11ref|XM_747726.1| Aspergillus fumigatus Af293 hypothetical protei... 38 8.8
12gb|AC131771.2| Mus musculus BAC clone RP24-297P10 from chromosom... 38 8.8
13gb|AC137844.8| Mus musculus, clone RP23-415L22, complete sequence 38 8.8
14emb|BX649607.1| Aspergillus fumigatus BAC pilot project supercon... 38 8.8
15emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4,... 38 8.8
16gb|AC165292.2| Mus musculus BAC clone RP23-319D22 from chromosom... 38 8.8
17emb|CR450704.7| Zebrafish DNA sequence from clone DKEY-65O14 in ... 38 8.8
18dbj|AB000383.1| Leucania separata nuclear polyhedrosis virus gen... 38 8.8
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.8
20gb|AC129569.17| Mus musculus chromosome 5, clone RP23-121M13, co... 38 8.8
21gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Can... 38 8.8
22gb|AY126275.1| Mamestra configurata nucleopolyhedrovirus B, comp... 38 8.8
23emb|BX784025.12| Zebrafish DNA sequence from clone DKEY-72L14 in... 38 8.8
24gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, compl... 38 8.8
25gb|AC131263.6| Homo sapiens chromosome 11, clone RP11-348A11, co... 38 8.8
26gb|AC092470.9| Homo sapiens 12 BAC RP11-72J9 (Roswell Park Cance... 38 8.8

>dbj|AB063249.1| Hordeum vulgare DMAS2 mRNA for deoxymugineic acid synthase 2,
            complete cds
          Length = 1202

 Score =  276 bits (139), Expect = 2e-71
 Identities = 170/179 (94%), Gaps = 1/179 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    caacatcagggggttatttggcttgaaaatcacaacaatacccacgatttccgtacaaac 60
            |||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 1169 caacatcaagggcttatttggcttggaaatcacaacaatacccacgatttctgtacaaac 1110

                                                                        
Query: 61   tgttccgcaaaaacttattactatcacaatcaaatacgtacaccgtatcaccctttcagg 120
            |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1109 tgttccacagaaacttattactatcacaatcaaatacgtacacc-tatcaccctttcagg 1051

                                                                       
Query: 121  tcaaatgccaagcgcagggctaacaaactgaaacaagagtccacgtctacagttcccgt 179
            |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 1050 tcaaatgccaagcgcagggctagcgaactgaaacaagagtccacgtctacagttcccgt 992



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>dbj|AB063248.1| Hordeum vulgare DMAS1 mRNA for deoxymugineic acid synthase 1,
            complete cds
          Length = 1357

 Score =  262 bits (132), Expect = 3e-67
 Identities = 157/164 (95%), Gaps = 1/164 (0%)
 Strand = Plus / Minus

                                                                        
Query: 17   tttggcttgaaaatcacaacaatacccacgatttccgtacaaactgttccgcaaaaactt 76
            ||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 1344 tttggcttggaaatcacaacaatacccacgatttctgtacaaactgttccacagaaactt 1285

                                                                        
Query: 77   attactatcacaatcaaatacgtacaccgtatcaccctttcaggtcaaatgccaagcgca 136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 attactatcacaatcaaatacgtacaccgtatcaccctttcaggtcaaatgccaagcgca 1225

                                                        
Query: 137  gggctaac-aaactgaaacaagagtccacgtctacagttcccgt 179
            |||||| |  ||||||||||||||||||||||||||||||||||
Sbjct: 1224 gggctagctgaactgaaacaagagtccacgtctacagttcccgt 1181



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>gb|AY364467.1| Triticum monococcum cytosolic glutathione reductase (grc1) mRNA,
            complete cds
          Length = 1806

 Score =  119 bits (60), Expect = 3e-24
 Identities = 108/123 (87%), Gaps = 7/123 (5%)
 Strand = Plus / Minus

                                                                        
Query: 35   acaatacccacgatttccgtacaaactgttccgcaaaaacttattactatcacaatcaaa 94
            ||||||||||||||||| |||||||||||||| || ||||||||| ||| ||   |||||
Sbjct: 1747 acaatacccacgatttctgtacaaactgttccacagaaacttatttctacca---tcaaa 1691

                                                                        
Query: 95   tacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctaacaaactgaaac 154
            |||    |||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct: 1690 tac----accgtatcaccctttcaggtcaaatgccaagcacagagctaacgaactgaaac 1635

               
Query: 155  aag 157
            |||
Sbjct: 1634 aag 1632



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>emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chromosome 2, complete
              sequence
          Length = 193797

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 68     caaaaacttattactatcacaa 89
              ||||||||||||||||||||||
Sbjct: 140773 caaaaacttattactatcacaa 140794



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>gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, complete sequence
          Length = 197019

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 113  ctttcaggtcaaatgccaagc 133
            |||||||||||||||||||||
Sbjct: 4589 ctttcaggtcaaatgccaagc 4569



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>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence
          Length = 203773

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   ctttcaggtcaaatgccaagc 133
             |||||||||||||||||||||
Sbjct: 77631 ctttcaggtcaaatgccaagc 77611



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>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the
             5' end of the SLC24A2 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger), member 2 (NCKX2) and
             a CpG island, complete sequence
          Length = 159900

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   aaatgccaagcgcagggcta 142
             ||||||||||||||||||||
Sbjct: 39822 aaatgccaagcgcagggcta 39803



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>gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome 12, complete sequence
          Length = 211561

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ttgaaaatcacaacaatacc 42
              ||||||||||||||||||||
Sbjct: 106395 ttgaaaatcacaacaatacc 106376



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>gb|AF539999.1| Mamestra configurata nucleopolyhedrovirus A 90/4, complete genome
          Length = 153656

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 139   gctaacaaactgaaacaag 157
             |||||||||||||||||||
Sbjct: 68671 gctaacaaactgaaacaag 68653



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>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 227955

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 142    aacaaactgaaacaagagtccac 164
              ||||||||||||||| |||||||
Sbjct: 209922 aacaaactgaaacaaaagtccac 209944



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>ref|XM_747726.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g14500) partial
            mRNA
          Length = 2856

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 127  gccaagcgcagggctaacaaactgaaa 153
            |||||||||||||| || |||||||||
Sbjct: 2044 gccaagcgcagggccaagaaactgaaa 2070



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>gb|AC131771.2| Mus musculus BAC clone RP24-297P10 from chromosome 10, complete sequence
          Length = 145678

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 78     ttactatcacaatcaaata 96
              |||||||||||||||||||
Sbjct: 112703 ttactatcacaatcaaata 112685



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>gb|AC137844.8| Mus musculus, clone RP23-415L22, complete sequence
          Length = 188189

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 143    acaaactgaaacaagagtc 161
              |||||||||||||||||||
Sbjct: 112700 acaaactgaaacaagagtc 112682



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>emb|BX649607.1| Aspergillus fumigatus BAC pilot project supercontig; segment 3/3
          Length = 227448

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 127    gccaagcgcagggctaacaaactgaaa 153
              |||||||||||||| || |||||||||
Sbjct: 224973 gccaagcgcagggccaagaaactgaaa 224999



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>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06,
             complete sequence
          Length = 143730

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 86    acaatcaaatacgtacaccgtat 108
             |||||||||||||||| ||||||
Sbjct: 35812 acaatcaaatacgtactccgtat 35790



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>gb|AC165292.2| Mus musculus BAC clone RP23-319D22 from chromosome 10, complete sequence
          Length = 192726

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 78     ttactatcacaatcaaata 96
              |||||||||||||||||||
Sbjct: 166526 ttactatcacaatcaaata 166544



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>emb|CR450704.7| Zebrafish DNA sequence from clone DKEY-65O14 in linkage group 8,
             complete sequence
          Length = 191439

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    aaaatcacaacaataccca 44
             |||||||||||||||||||
Sbjct: 60510 aaaatcacaacaataccca 60492



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>dbj|AB000383.1| Leucania separata nuclear polyhedrosis virus genes for p13, xe,
            envelope protein, complete cds
          Length = 5423

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 139  gctaacaaactgaaacaag 157
            |||||||||||||||||||
Sbjct: 3916 gctaacaaactgaaacaag 3898



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 86     acaatcaaatacgtacaccgtat 108
              |||||||||||||||| ||||||
Sbjct: 504844 acaatcaaatacgtactccgtat 504822



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>gb|AC129569.17| Mus musculus chromosome 5, clone RP23-121M13, complete sequence
          Length = 199799

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 105    gtatcaccctttcaggtca 123
              |||||||||||||||||||
Sbjct: 143924 gtatcaccctttcaggtca 143942



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>gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155898

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    cttgaaaatcacaacaata 40
             |||||||||||||||||||
Sbjct: 16385 cttgaaaatcacaacaata 16403



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>gb|AY126275.1| Mamestra configurata nucleopolyhedrovirus B, complete genome
          Length = 158482

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 139   gctaacaaactgaaacaag 157
             |||||||||||||||||||
Sbjct: 72429 gctaacaaactgaaacaag 72411



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>emb|BX784025.12| Zebrafish DNA sequence from clone DKEY-72L14 in linkage group 8, complete
              sequence
          Length = 257681

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     aaaatcacaacaataccca 44
              |||||||||||||||||||
Sbjct: 178809 aaaatcacaacaataccca 178791



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>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence
          Length = 198383

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     ttgaaaatcacaacaatac 41
              |||||||||||||||||||
Sbjct: 193848 ttgaaaatcacaacaatac 193866



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>gb|AC131263.6| Homo sapiens chromosome 11, clone RP11-348A11, complete sequence
          Length = 179568

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    caaaaacttattactatca 86
             |||||||||||||||||||
Sbjct: 57627 caaaaacttattactatca 57609



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>gb|AC092470.9| Homo sapiens 12 BAC RP11-72J9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96100

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 136   agggctaacaaactgaaacaaga 158
             |||||| ||||||||||||||||
Sbjct: 28029 agggctcacaaactgaaacaaga 28007


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,285,961
Number of Sequences: 3902068
Number of extensions: 1285961
Number of successful extensions: 86105
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86031
Number of HSP's gapped (non-prelim): 72
length of query: 179
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 157
effective length of database: 17,147,199,772
effective search space: 2692110364204
effective search space used: 2692110364204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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