Clone Name | rbart53e09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB063249.1| Hordeum vulgare DMAS2 mRNA for deoxymugineic acid synthase 2, complete cds Length = 1202 Score = 276 bits (139), Expect = 2e-71 Identities = 170/179 (94%), Gaps = 1/179 (0%) Strand = Plus / Minus Query: 1 caacatcagggggttatttggcttgaaaatcacaacaatacccacgatttccgtacaaac 60 |||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct: 1169 caacatcaagggcttatttggcttggaaatcacaacaatacccacgatttctgtacaaac 1110 Query: 61 tgttccgcaaaaacttattactatcacaatcaaatacgtacaccgtatcaccctttcagg 120 |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1109 tgttccacagaaacttattactatcacaatcaaatacgtacacc-tatcaccctttcagg 1051 Query: 121 tcaaatgccaagcgcagggctaacaaactgaaacaagagtccacgtctacagttcccgt 179 |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 1050 tcaaatgccaagcgcagggctagcgaactgaaacaagagtccacgtctacagttcccgt 992
>dbj|AB063248.1| Hordeum vulgare DMAS1 mRNA for deoxymugineic acid synthase 1, complete cds Length = 1357 Score = 262 bits (132), Expect = 3e-67 Identities = 157/164 (95%), Gaps = 1/164 (0%) Strand = Plus / Minus Query: 17 tttggcttgaaaatcacaacaatacccacgatttccgtacaaactgttccgcaaaaactt 76 ||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct: 1344 tttggcttggaaatcacaacaatacccacgatttctgtacaaactgttccacagaaactt 1285 Query: 77 attactatcacaatcaaatacgtacaccgtatcaccctttcaggtcaaatgccaagcgca 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284 attactatcacaatcaaatacgtacaccgtatcaccctttcaggtcaaatgccaagcgca 1225 Query: 137 gggctaac-aaactgaaacaagagtccacgtctacagttcccgt 179 |||||| | |||||||||||||||||||||||||||||||||| Sbjct: 1224 gggctagctgaactgaaacaagagtccacgtctacagttcccgt 1181
>gb|AY364467.1| Triticum monococcum cytosolic glutathione reductase (grc1) mRNA, complete cds Length = 1806 Score = 119 bits (60), Expect = 3e-24 Identities = 108/123 (87%), Gaps = 7/123 (5%) Strand = Plus / Minus Query: 35 acaatacccacgatttccgtacaaactgttccgcaaaaacttattactatcacaatcaaa 94 ||||||||||||||||| |||||||||||||| || ||||||||| ||| || ||||| Sbjct: 1747 acaatacccacgatttctgtacaaactgttccacagaaacttatttctacca---tcaaa 1691 Query: 95 tacgtacaccgtatcaccctttcaggtcaaatgccaagcgcagggctaacaaactgaaac 154 ||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||| Sbjct: 1690 tac----accgtatcaccctttcaggtcaaatgccaagcacagagctaacgaactgaaac 1635 Query: 155 aag 157 ||| Sbjct: 1634 aag 1632
>emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chromosome 2, complete sequence Length = 193797 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 68 caaaaacttattactatcacaa 89 |||||||||||||||||||||| Sbjct: 140773 caaaaacttattactatcacaa 140794
>gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, complete sequence Length = 197019 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 ctttcaggtcaaatgccaagc 133 ||||||||||||||||||||| Sbjct: 4589 ctttcaggtcaaatgccaagc 4569
>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence Length = 203773 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 ctttcaggtcaaatgccaagc 133 ||||||||||||||||||||| Sbjct: 77631 ctttcaggtcaaatgccaagc 77611
>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5' end of the SLC24A2 gene for solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (NCKX2) and a CpG island, complete sequence Length = 159900 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaatgccaagcgcagggcta 142 |||||||||||||||||||| Sbjct: 39822 aaatgccaagcgcagggcta 39803
>gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome 12, complete sequence Length = 211561 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttgaaaatcacaacaatacc 42 |||||||||||||||||||| Sbjct: 106395 ttgaaaatcacaacaatacc 106376
>gb|AF539999.1| Mamestra configurata nucleopolyhedrovirus A 90/4, complete genome Length = 153656 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 139 gctaacaaactgaaacaag 157 ||||||||||||||||||| Sbjct: 68671 gctaacaaactgaaacaag 68653
>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland Research Institute) complete sequence Length = 227955 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 142 aacaaactgaaacaagagtccac 164 ||||||||||||||| ||||||| Sbjct: 209922 aacaaactgaaacaaaagtccac 209944
>ref|XM_747726.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g14500) partial mRNA Length = 2856 Score = 38.2 bits (19), Expect = 8.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 127 gccaagcgcagggctaacaaactgaaa 153 |||||||||||||| || ||||||||| Sbjct: 2044 gccaagcgcagggccaagaaactgaaa 2070
>gb|AC131771.2| Mus musculus BAC clone RP24-297P10 from chromosome 10, complete sequence Length = 145678 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 ttactatcacaatcaaata 96 ||||||||||||||||||| Sbjct: 112703 ttactatcacaatcaaata 112685
>gb|AC137844.8| Mus musculus, clone RP23-415L22, complete sequence Length = 188189 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 143 acaaactgaaacaagagtc 161 ||||||||||||||||||| Sbjct: 112700 acaaactgaaacaagagtc 112682
>emb|BX649607.1| Aspergillus fumigatus BAC pilot project supercontig; segment 3/3 Length = 227448 Score = 38.2 bits (19), Expect = 8.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 127 gccaagcgcagggctaacaaactgaaa 153 |||||||||||||| || ||||||||| Sbjct: 224973 gccaagcgcagggccaagaaactgaaa 224999
>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06, complete sequence Length = 143730 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 86 acaatcaaatacgtacaccgtat 108 |||||||||||||||| |||||| Sbjct: 35812 acaatcaaatacgtactccgtat 35790
>gb|AC165292.2| Mus musculus BAC clone RP23-319D22 from chromosome 10, complete sequence Length = 192726 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ttactatcacaatcaaata 96 ||||||||||||||||||| Sbjct: 166526 ttactatcacaatcaaata 166544
>emb|CR450704.7| Zebrafish DNA sequence from clone DKEY-65O14 in linkage group 8, complete sequence Length = 191439 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 aaaatcacaacaataccca 44 ||||||||||||||||||| Sbjct: 60510 aaaatcacaacaataccca 60492
>dbj|AB000383.1| Leucania separata nuclear polyhedrosis virus genes for p13, xe, envelope protein, complete cds Length = 5423 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 139 gctaacaaactgaaacaag 157 ||||||||||||||||||| Sbjct: 3916 gctaacaaactgaaacaag 3898
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 86 acaatcaaatacgtacaccgtat 108 |||||||||||||||| |||||| Sbjct: 504844 acaatcaaatacgtactccgtat 504822
>gb|AC129569.17| Mus musculus chromosome 5, clone RP23-121M13, complete sequence Length = 199799 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 105 gtatcaccctttcaggtca 123 ||||||||||||||||||| Sbjct: 143924 gtatcaccctttcaggtca 143942
>gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155898 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 cttgaaaatcacaacaata 40 ||||||||||||||||||| Sbjct: 16385 cttgaaaatcacaacaata 16403
>gb|AY126275.1| Mamestra configurata nucleopolyhedrovirus B, complete genome Length = 158482 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 139 gctaacaaactgaaacaag 157 ||||||||||||||||||| Sbjct: 72429 gctaacaaactgaaacaag 72411
>emb|BX784025.12| Zebrafish DNA sequence from clone DKEY-72L14 in linkage group 8, complete sequence Length = 257681 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 aaaatcacaacaataccca 44 ||||||||||||||||||| Sbjct: 178809 aaaatcacaacaataccca 178791
>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence Length = 198383 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 ttgaaaatcacaacaatac 41 ||||||||||||||||||| Sbjct: 193848 ttgaaaatcacaacaatac 193866
>gb|AC131263.6| Homo sapiens chromosome 11, clone RP11-348A11, complete sequence Length = 179568 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 caaaaacttattactatca 86 ||||||||||||||||||| Sbjct: 57627 caaaaacttattactatca 57609
>gb|AC092470.9| Homo sapiens 12 BAC RP11-72J9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96100 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 136 agggctaacaaactgaaacaaga 158 |||||| |||||||||||||||| Sbjct: 28029 agggctcacaaactgaaacaaga 28007 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,285,961 Number of Sequences: 3902068 Number of extensions: 1285961 Number of successful extensions: 86105 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86031 Number of HSP's gapped (non-prelim): 72 length of query: 179 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 157 effective length of database: 17,147,199,772 effective search space: 2692110364204 effective search space used: 2692110364204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)