ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC105976.13| Mus musculus chromosome 5, clone RP24-315H14, co... 38 1.2
2ref|XM_752927.1| Ustilago maydis 521 hypothetical protein (UM018... 38 1.2
3ref|XM_801409.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 1.2
4emb|AL662793.10| Mouse DNA sequence from clone RP23-186D6 on chr... 36 4.6
5gb|AC015864.5| Homo sapiens chromosome 18, clone RP11-54A1, comp... 36 4.6
6emb|Y15087.1|GGY15087 Gallus gallus ICSBP gene, promoter sequence 36 4.6
7dbj|AP001169.1| Homo sapiens genomic DNA, chromosome 18q21, dele... 36 4.6

>gb|AC105976.13| Mus musculus chromosome 5, clone RP24-315H14, complete sequence
          Length = 188130

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     tccatccttcaccttcgga 39
              |||||||||||||||||||
Sbjct: 103174 tccatccttcaccttcgga 103192



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>ref|XM_752927.1| Ustilago maydis 521 hypothetical protein (UM01873.1) partial mRNA
          Length = 2079

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   ccatccttcaccttcggag 40
            |||||||||||||||||||
Sbjct: 2014 ccatccttcaccttcggag 2032



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>ref|XM_801409.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509575.30) partial mRNA
          Length = 1446

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 12  gcggcccattccatccttc 30
           |||||||||||||||||||
Sbjct: 506 gcggcccattccatccttc 488



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>emb|AL662793.10| Mouse DNA sequence from clone RP23-186D6 on chromosome 11 Contains two
             novel genes, the Cpeb4 gene for cytoplasmic
             polyadenylation element binding protein 4, the 5' end of a
             novel gene and two CpG islands, complete sequence
          Length = 215152

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    catccttcaccttcggag 40
             ||||||||||||||||||
Sbjct: 88634 catccttcaccttcggag 88617



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>gb|AC015864.5| Homo sapiens chromosome 18, clone RP11-54A1, complete sequence
          Length = 177410

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 19     attccatccttcaccttc 36
              ||||||||||||||||||
Sbjct: 135202 attccatccttcaccttc 135185



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>emb|Y15087.1|GGY15087 Gallus gallus ICSBP gene, promoter sequence
          Length = 1800

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   ctgcggcccattccatcc 27
            ||||||||||||||||||
Sbjct: 1438 ctgcggcccattccatcc 1421



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>dbj|AP001169.1| Homo sapiens genomic DNA, chromosome 18q21, deleted region in human
             lung cancer, complete sequence
          Length = 146736

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    attccatccttcaccttc 36
             ||||||||||||||||||
Sbjct: 57880 attccatccttcaccttc 57897


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 236,688
Number of Sequences: 3902068
Number of extensions: 236688
Number of successful extensions: 60386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60379
Number of HSP's gapped (non-prelim): 7
length of query: 41
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 21
effective length of database: 17,155,003,908
effective search space: 360255082068
effective search space used: 360255082068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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