ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IGF1R_RAT (P24062) Insulin-like growth factor 1 receptor precurs... 28 5.5
2INSRR_RAT (Q64716) Insulin receptor-related protein precursor (E... 28 5.5
3AMPM1_SCHPO (O59730) Probable methionine aminopeptidase 1 (EC 3.... 28 5.5
4IGF1R_MOUSE (Q60751) Insulin-like growth factor 1 receptor precu... 28 5.5
5CP4F2_HUMAN (P78329) Cytochrome P450 4F2 (EC 1.14.13.30) (CYPIVF... 27 9.3

>IGF1R_RAT (P24062) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I
           receptor) [Contains: Insulin-like growth factor 1
           receptor alpha chain; Insulin-like growth factor 1
           receptor beta chain]
          Length = 1370

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 145 HVTCSRHCNDHADLWSCPTCAEHM*QGVMRPSCKIGAY 32
           H  C   C+   D  +C  C  +  +GV  P+C  G Y
Sbjct: 232 HPECLGSCHTPDDNTTCVACRHYYYKGVCVPACPPGTY 269



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>INSRR_RAT (Q64716) Insulin receptor-related protein precursor (EC 2.7.10.1)|
           (IRR) (IR-related receptor) (Fragments)
          Length = 581

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 145 HVTCSRHCNDHADLWSCPTCAEHM*QGVMRPSCKIGAY 32
           H  C   C+   D  +C  C     QGV  P+C  G Y
Sbjct: 230 HSECLGGCSQPEDPRACVACRHLYFQGVCLPACPPGTY 267



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>AMPM1_SCHPO (O59730) Probable methionine aminopeptidase 1 (EC 3.4.11.18) (MetAP|
           1) (MAP 1) (Peptidase M 1)
          Length = 379

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 145 HVTCSRHCNDHADLWSCPTC 86
           H+ C   CN+ AD   CP C
Sbjct: 8   HICCGIDCNNEADRLQCPKC 27



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>IGF1R_MOUSE (Q60751) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I
           receptor) [Contains: Insulin-like growth factor 1
           receptor alpha chain; Insulin-like growth factor 1
           receptor beta chain]
          Length = 1373

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 145 HVTCSRHCNDHADLWSCPTCAEHM*QGVMRPSCKIGAY 32
           H  C   C+   D  +C  C  +  +GV  P+C  G Y
Sbjct: 232 HPECLGSCHTPDDNTTCVACRHYYYKGVCVPACPPGTY 269



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>CP4F2_HUMAN (P78329) Cytochrome P450 4F2 (EC 1.14.13.30) (CYPIVF2)|
           (Leukotriene-B(4) omega-hydroxylase) (Leukotriene-B(4)
           20-monooxygenase) (Cytochrome P450-LTB-omega)
          Length = 520

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -3

Query: 314 SW-GLWPIAAESWLCL 270
           SW GLWP+AA  WL L
Sbjct: 7   SWLGLWPVAASPWLLL 22


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,497,252
Number of Sequences: 219361
Number of extensions: 881766
Number of successful extensions: 1683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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