ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 30 1.3
2Z585B_PONPY (Q5RB30) Zinc finger protein 585B 30 1.3
3Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger prote... 30 1.7
4SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 29 3.7
5SYL_CLOTE (Q898V2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 8.3
6SYL_BACFR (Q64MG4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 8.3

>SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 925

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 188 EYLGLTRANYALRDAVFSRPR 126
           ++LG  + NY LRDA+FSR R
Sbjct: 465 KHLGCVKVNYRLRDAIFSRQR 485



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>Z585B_PONPY (Q5RB30) Zinc finger protein 585B|
          Length = 769

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 86  WMHLDLQEKN*FRDEVLKTRRH 151
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WQHLDLSQRNLYRDVMLETYSH 62



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>Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger protein 41-like|
           protein)
          Length = 769

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 86  WMHLDLQEKN*FRDEVLKTRRH 151
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WRHLDLSQRNLYRDVMLETYSH 62



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>SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 944

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 182 LGLTRANYALRDAVFSRPR 126
           LG  + NY LRDA+FSR R
Sbjct: 470 LGRVKVNYRLRDAIFSRQR 488



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>SYL_CLOTE (Q898V2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 812

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 230 LESDQQR--VFKPLTAEYLGLTRANYALRDAVFSRPR 126
           LES + R  V + L  E LG+ + NY LRD + SR R
Sbjct: 383 LESSKGRSAVVEKLEKENLGVKKINYRLRDWLVSRQR 419



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>SYL_BACFR (Q64MG4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 943

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 197 LTAEYLGLTRANYALRDAVFSRPR 126
           + A  LG  + N+ LRDA+FSR R
Sbjct: 464 IKATGLGRVKVNFRLRDAIFSRQR 487


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,864,004
Number of Sequences: 219361
Number of extensions: 471966
Number of successful extensions: 1137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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