ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189377.1| Oryza sativa (japonica cultivar-group), predic... 64 3e-07
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
3dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
4tpe|BN000552.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 64 3e-07
5emb|Z23131.1|HVPRX6GNA H.vulgare prx6 gene, complete CDS 54 3e-04
6ref|NM_187575.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.001
8gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
10tpe|BN000564.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 52 0.001
11gb|AY107230.1| Zea mays PCO080642 mRNA sequence 48 0.016
12gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.25
13emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.25
14gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.25
15gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.25
16gb|AC122563.8| Mus musculus chromosome 1, clone RP24-208F6, comp... 42 1.00
17ref|NM_196996.1| Oryza sativa (japonica cultivar-group) unknown ... 42 1.00
18gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.00
19gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p... 42 1.00
20gb|AC100531.15| Mus musculus chromosome 1, clone RP23-147I4, com... 42 1.00
21emb|AJ428529.1|AEV428529 Azoarcus evansii bzdN gene, bzdO gene, ... 42 1.00
22gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 gen... 42 1.00
23gb|AC078893.10| Oryza sativa chromosome 10 BAC OSJNBb0044B19 gen... 42 1.00
24gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.00
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.00
26dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.00
27dbj|AK100161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.00
28dbj|AK065629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.00
29gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.00
30ref|NM_191411.1| Oryza sativa (japonica cultivar-group), predic... 40 3.9
31emb|BX942819.18| Zebrafish DNA sequence from clone CH211-197E10 ... 40 3.9
32emb|CR293498.12| Zebrafish DNA sequence from clone DKEY-5I16 in ... 40 3.9
33emb|BX936303.17| Zebrafish DNA sequence from clone DKEY-105F21 i... 40 3.9
34emb|CR812792.16| Zebrafish DNA sequence from clone DKEY-33J18 in... 40 3.9
35emb|BX927164.19| Zebrafish DNA sequence from clone DKEY-27P2 in ... 40 3.9
36emb|BX465220.18| Zebrafish DNA sequence from clone CH211-226O13 ... 40 3.9
37emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.9
38emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 3.9
39emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 3.9
40emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 3.9
41emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 i... 40 3.9
42gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 3.9
43gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 3.9
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
45dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
46dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene ... 40 3.9
47dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
48emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 3.9
49dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
50gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.9
51dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 3.9
52dbj|D32254.1|STMSAM Streptomyces coelicolor DNA for aspartate a... 40 3.9 
>ref|NM_189377.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1077

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 258 gtgagcacgttgatctgccccatcttcaccatggac 293
           ||||||||| ||||||||||||||||||||||||||
Sbjct: 965 gtgagcacgctgatctgccccatcttcaccatggac 930
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                    
Query: 258      gtgagcacgttgatctgccccatcttcaccatggac 293
                ||||||||| ||||||||||||||||||||||||||
Sbjct: 42439705 gtgagcacgctgatctgccccatcttcaccatggac 42439670



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 199      cggcgctgcgggcggcgttgggcacggagcag 230
                ||||||||  ||||||| ||||||||||||||
Sbjct: 32495026 cggcgctggtggcggcgctgggcacggagcag 32494995
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                 
Query: 258   gtgagcacgttgatctgccccatcttcaccatggac 293
             ||||||||| ||||||||||||||||||||||||||
Sbjct: 99043 gtgagcacgctgatctgccccatcttcaccatggac 99008
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>tpe|BN000552.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx23 gene for
            class III peroxidase 23 precursor, exons 1-2
          Length = 1459

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 258  gtgagcacgttgatctgccccatcttcaccatggac 293
            ||||||||| ||||||||||||||||||||||||||
Sbjct: 1347 gtgagcacgctgatctgccccatcttcaccatggac 1312
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>emb|Z23131.1|HVPRX6GNA H.vulgare prx6 gene, complete CDS
          Length = 2666

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 243  tggccctggttgccagtgagcacgttgatctgccccatcttcaccatggac 293
            |||||||||| ||| ||||||||  | ||||| ||||||||||||||||||
Sbjct: 1853 tggccctggtcgccggtgagcacccttatctggcccatcttcaccatggac 1803
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>ref|NM_187575.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 960

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 258 gtgagcacgttgatctgccccatcttcaccatgg 291
           |||||||| | |||||||||||||||||||||||
Sbjct: 914 gtgagcacctcgatctgccccatcttcaccatgg 881
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 258     gtgagcacgttgatctgccccatcttcaccatgg 291
               |||||||| | |||||||||||||||||||||||
Sbjct: 1170529 gtgagcacctcgatctgccccatcttcaccatgg 1170562
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>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08,
             complete sequence
          Length = 100986

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 258   gtgagcacgttgatctgccccatcttcaccatgg 291
             |||||||| | |||||||||||||||||||||||
Sbjct: 74233 gtgagcacctcgatctgccccatcttcaccatgg 74266
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 258     gtgagcacgttgatctgccccatcttcaccatgg 291
               |||||||| | |||||||||||||||||||||||
Sbjct: 1170527 gtgagcacctcgatctgccccatcttcaccatgg 1170560
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>tpe|BN000564.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx35 gene for
           class III peroxidase 35 precursor, exons 1-2
          Length = 1031

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 258 gtgagcacgttgatctgccccatcttcaccatgg 291
           |||||||| | |||||||||||||||||||||||
Sbjct: 985 gtgagcacctcgatctgccccatcttcaccatgg 952
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>gb|AY107230.1| Zea mays PCO080642 mRNA sequence
          Length = 906

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 258 gtgagcacgttgatctgccccatcttcaccatggacttgacgaa 301
           |||||||| | ||||||||||||||| | |||||||||| ||||
Sbjct: 555 gtgagcacctcgatctgccccatcttgagcatggacttggcgaa 512
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 191     ctcgtcaccggcgctgcgggcggcgt 216
               |||||||||||||| |||||||||||
Sbjct: 2268716 ctcgtcaccggcgcggcgggcggcgt 2268691



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 195     tcaccggcgctgcgggcggc 214
               ||||||||||||||||||||
Sbjct: 1202961 tcaccggcgctgcgggcggc 1202942
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 191    ctcgtcaccggcgctgcgggcggcgt 216
              |||||||||||||| |||||||||||
Sbjct: 430106 ctcgtcaccggcgcggcgggcggcgt 430081



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 195     tcaccggcgctgcgggcggc 214
               ||||||||||||||||||||
Sbjct: 2518954 tcaccggcgctgcgggcggc 2518935
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 191     ctcgtcaccggcgctgcgggcggcgt 216
               |||||||||||||| |||||||||||
Sbjct: 1558326 ctcgtcaccggcgcggcgggcggcgt 1558351



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    tcaccggcgctgcgggcggc 214
              ||||||||||||||||||||
Sbjct: 243946 tcaccggcgctgcgggcggc 243965
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 191     ctcgtcaccggcgctgcgggcggcgt 216
               |||||||||||||| |||||||||||
Sbjct: 2552360 ctcgtcaccggcgcggcgggcggcgt 2552385
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>gb|AC122563.8| Mus musculus chromosome 1, clone RP24-208F6, complete sequence
          Length = 180825

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 77    acttccaaagtccaaacctta 97
             |||||||||||||||||||||
Sbjct: 14027 acttccaaagtccaaacctta 14047
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>ref|NM_196996.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBb0044B19.3), mRNA
          Length = 1527

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 153 acggtctcgacggcggcctcg 173
           |||||||||||||||||||||
Sbjct: 486 acggtctcgacggcggcctcg 466
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 185    cggcagctcgtcaccggcgctgcgggcggcgttgggc 221
              |||| |||||||||||| || ||||||||||| ||||
Sbjct: 488457 cggctgctcgtcaccggggccgcgggcggcgtggggc 488421
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>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds
          Length = 1308

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 237 cggatctggccctggttgccagtgagcacgttgatctgccccatcttcaccatggacttg 296
           |||||||  |||||| |||||||||||| ||  || |  | |||||||||||||||||||
Sbjct: 974 cggatctcaccctgggtgccagtgagcaagtccatgttgctcatcttcaccatggacttg 915

                
Query: 297 acgaa 301
            ||||
Sbjct: 914 gcgaa 910
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>gb|AC100531.15| Mus musculus chromosome 1, clone RP23-147I4, complete sequence
          Length = 202351

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 77     acttccaaagtccaaacctta 97
              |||||||||||||||||||||
Sbjct: 189491 acttccaaagtccaaacctta 189511
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>emb|AJ428529.1|AEV428529 Azoarcus evansii bzdN gene, bzdO gene, bzdP gene, bzdQ gene, bzdR gene,
             ORF1, ORF2, bzdV gene, bzdW gene, bzdX gene, bzdY gene,
             bzdZ gene, bzdA gene and partial bzdB' gene
          Length = 16512

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 192   tcgtcaccggcgctgcgggcggcgt 216
             |||||| ||||||||||||||||||
Sbjct: 10692 tcgtcatcggcgctgcgggcggcgt 10716
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>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
              sequence
          Length = 163279

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    acggtctcgacggcggcctcg 173
              |||||||||||||||||||||
Sbjct: 160220 acggtctcgacggcggcctcg 160240
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>gb|AC078893.10| Oryza sativa chromosome 10 BAC OSJNBb0044B19 genomic sequence, complete
             sequence
          Length = 81784

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 153   acggtctcgacggcggcctcg 173
             |||||||||||||||||||||
Sbjct: 35541 acggtctcgacggcggcctcg 35561
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 195     tcaccggcgctgcgggcggcg 215
               |||||||||||||||||||||
Sbjct: 3645708 tcaccggcgctgcgggcggcg 3645728
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 153      acggtctcgacggcggcctcg 173
                |||||||||||||||||||||
Sbjct: 17212059 acggtctcgacggcggcctcg 17212039
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 195     tcaccggcgctgcgggcggcgttgg 219
               ||||||||||||| |||||||||||
Sbjct: 6305875 tcaccggcgctgccggcggcgttgg 6305899
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>dbj|AK100161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P10, full
           insert sequence
          Length = 1045

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 153 acggtctcgacggcggcctcg 173
           |||||||||||||||||||||
Sbjct: 65  acggtctcgacggcggcctcg 45
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>dbj|AK065629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028C23, full
           insert sequence
          Length = 1550

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 153 acggtctcgacggcggcctcg 173
           |||||||||||||||||||||
Sbjct: 514 acggtctcgacggcggcctcg 494
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 153      acggtctcgacggcggcctcg 173
                |||||||||||||||||||||
Sbjct: 17221099 acggtctcgacggcggcctcg 17221079
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>ref|NM_191411.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1602

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 199  cggcgctgcgggcggcgttgggcacggagcag 230
            ||||||||  ||||||| ||||||||||||||
Sbjct: 1067 cggcgctggtggcggcgctgggcacggagcag 1098
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>emb|BX942819.18| Zebrafish DNA sequence from clone CH211-197E10 in linkage group 23,
             complete sequence
          Length = 141473

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    cgcatgctctctgacttcca 83
             ||||||||||||||||||||
Sbjct: 66978 cgcatgctctctgacttcca 66959
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>emb|CR293498.12| Zebrafish DNA sequence from clone DKEY-5I16 in linkage group 23, complete
              sequence
          Length = 147189

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     cgcatgctctctgacttcca 83
              ||||||||||||||||||||
Sbjct: 143368 cgcatgctctctgacttcca 143349
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>emb|BX936303.17| Zebrafish DNA sequence from clone DKEY-105F21 in linkage group 4,
             complete sequence
          Length = 131273

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    cgcatgctctctgacttcca 83
             ||||||||||||||||||||
Sbjct: 70291 cgcatgctctctgacttcca 70272
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>emb|CR812792.16| Zebrafish DNA sequence from clone DKEY-33J18 in linkage group 4,
             complete sequence
          Length = 123987

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    cgcatgctctctgacttcca 83
             ||||||||||||||||||||
Sbjct: 63423 cgcatgctctctgacttcca 63404
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>emb|BX927164.19| Zebrafish DNA sequence from clone DKEY-27P2 in linkage group 5,
             complete sequence
          Length = 108759

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    cgcatgctctctgacttcca 83
             ||||||||||||||||||||
Sbjct: 29890 cgcatgctctctgacttcca 29909
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>emb|BX465220.18| Zebrafish DNA sequence from clone CH211-226O13 in linkage group 21,
              complete sequence
          Length = 209782

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     cgcatgctctctgacttcca 83
              ||||||||||||||||||||
Sbjct: 117167 cgcatgctctctgacttcca 117148
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    ccggcgctgcgggcggcgtt 217
              ||||||||||||||||||||
Sbjct: 147146 ccggcgctgcgggcggcgtt 147165
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ccggcgctgcgggcggcgtt 217
             ||||||||||||||||||||
Sbjct: 70200 ccggcgctgcgggcggcgtt 70219
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    ctcgacggcggcctcgacga 177
              ||||||||||||||||||||
Sbjct: 241337 ctcgacggcggcctcgacga 241356
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    cgacggcggcctcgacgacg 179
              ||||||||||||||||||||
Sbjct: 852590 cgacggcggcctcgacgacg 852609
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>emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 in linkage group 15,
             complete sequence
          Length = 224041

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    cgcatgctctctgacttcca 83
             ||||||||||||||||||||
Sbjct: 31649 cgcatgctctctgacttcca 31630
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     gacggcggcctcgacgacgg 180
               ||||||||||||||||||||
Sbjct: 2345186 gacggcggcctcgacgacgg 2345205
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 191     ctcgtcaccggcgctgcgggcggc 214
               |||||| |||||||||||||||||
Sbjct: 2216370 ctcgtccccggcgctgcgggcggc 2216393
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 97       actaaagcataaaacaagct 116
                ||||||||||||||||||||
Sbjct: 24242600 actaaagcataaaacaagct 24242619
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 199   cggcgctgcgggcggcgttgggcacggagcag 230
             ||||||||  ||||||| ||||||||||||||
Sbjct: 82547 cggcgctggtggcggcgctgggcacggagcag 82516
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>dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene for tryptophan
            decarboxylase, complete cds
          Length = 1602

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 199  cggcgctgcgggcggcgttgggcacggagcag 230
            ||||||||  ||||||| ||||||||||||||
Sbjct: 1067 cggcgctggtggcggcgctgggcacggagcag 1098
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>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E05
          Length = 137364

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    actaaagcataaaacaagct 116
             ||||||||||||||||||||
Sbjct: 54151 actaaagcataaaacaagct 54170
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     cggtctcgacggcggcctcg 173
               ||||||||||||||||||||
Sbjct: 1378592 cggtctcgacggcggcctcg 1378611
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>dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D01, full
            insert sequence
          Length = 1922

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 199  cggcgctgcgggcggcgttgggcacggagcag 230
            ||||||||  ||||||| ||||||||||||||
Sbjct: 1190 cggcgctggtggcggcgctgggcacggagcag 1221
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 160     cgacggcggcctcgacgacg 179
               ||||||||||||||||||||
Sbjct: 1172383 cgacggcggcctcgacgacg 1172402
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     caccggcgctgcgggcggcg 215
               ||||||||||||||||||||
Sbjct: 3241946 caccggcgctgcgggcggcg 3241965
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>dbj|D32254.1|STMSAM Streptomyces coelicolor DNA for  aspartate
           aminotransferase,ribosomal protein, partial and complete
           cds
          Length = 2981

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 ctcgacggcggcctcgacga 177
           ||||||||||||||||||||
Sbjct: 180 ctcgacggcggcctcgacga 199


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,132,108
Number of Sequences: 3902068
Number of extensions: 2132108
Number of successful extensions: 44895
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44064
Number of HSP's gapped (non-prelim): 830
length of query: 301
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 279
effective length of database: 17,147,199,772
effective search space: 4784068736388
effective search space used: 4784068736388
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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