Clone Name | rbart53d02 |
---|---|
Clone Library Name | barley_pub |
>gb|AF055328.1|AF055328 Hordeum vulgare glucan endo-1,3-beta-glucosidase isoenzyme I (BHVG1) gene, complete cds Length = 3327 Score = 295 bits (149), Expect = 3e-77 Identities = 152/153 (99%) Strand = Plus / Minus Query: 44 gatctggttacacacttcactgctgcaatacgtccatgcatcttatttagggcgatatat 103 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3308 gatctggttacacacttcactgctgcaatacgtccatgcatcttatttaggccgatatat 3249 Query: 104 cgacgtgtacgtatatagtatccacgttacccttcactcctgcattatacgcagcttatt 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3248 cgacgtgtacgtatatagtatccacgttacccttcactcctgcattatacgcagcttatt 3189 Query: 164 tattactgtattaggttgacgtacgtacgcatg 196 ||||||||||||||||||||||||||||||||| Sbjct: 3188 tattactgtattaggttgacgtacgtacgcatg 3156
>gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-glucosidase (isoenzyme I) mRNA, 3' end Length = 1025 Score = 163 bits (82), Expect = 2e-37 Identities = 82/82 (100%) Strand = Plus / Minus Query: 115 tatatagtatccacgttacccttcactcctgcattatacgcagcttatttattactgtat 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1014 tatatagtatccacgttacccttcactcctgcattatacgcagcttatttattactgtat 955 Query: 175 taggttgacgtacgtacgcatg 196 |||||||||||||||||||||| Sbjct: 954 taggttgacgtacgtacgcatg 933
>emb|AJ890250.1| Triticum aestivum partial mRNA for putative glucan endo-1,3-beta-D-glucosidase (wgluc5 gene) Length = 1242 Score = 101 bits (51), Expect = 8e-19 Identities = 99/114 (86%), Gaps = 7/114 (6%) Strand = Plus / Minus Query: 55 acacttcactgctgcaatacgtccatgcatcttatttagggcga---tatatcgacgtgt 111 |||||||||||||||||||||| ||| |||||||||| || ||| ||||||||| Sbjct: 1137 acacttcactgctgcaatacgt----gcagcttatttaggctgacaatatgtcgacgtgt 1082 Query: 112 acgtatatagtatccacgttacccttcactcctgcattatacgcagcttattta 165 |||||||| ||| ||||||||| ||||||||||||| ||||||||||||||||| Sbjct: 1081 acgtatattgtacccacgttacacttcactcctgcactatacgcagcttattta 1028
>ref|XM_798356.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.160.0520) partial mRNA Length = 4818 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tcctgcattatacgcagctt 160 |||||||||||||||||||| Sbjct: 4241 tcctgcattatacgcagctt 4222
>gb|AC157561.10| Mus musculus chromosome 7, clone RP23-356A20, complete sequence Length = 232927 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 gcattgatctggttacacacttca 62 ||||||||||||||||||| |||| Sbjct: 106861 gcattgatctggttacacatttca 106884
>gb|AC121588.2| Mus musculus chromosome 3 clone RP23-275K22, complete sequence Length = 189679 Score = 38.2 bits (19), Expect = 9.7 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 23 aatcgtgttatgacatgcattgatctg 49 |||||||||||||| |||||||||||| Sbjct: 187882 aatcgtgttatgac-tgcattgatctg 187857
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 gcaatggttgcactcttgc 19 ||||||||||||||||||| Sbjct: 33399 gcaatggttgcactcttgc 33417
>emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 in linkage group 7, complete sequence Length = 208436 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 cttatttattactgtatta 176 ||||||||||||||||||| Sbjct: 1034 cttatttattactgtatta 1052
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 159 ttatttattactgtattag 177 ||||||||||||||||||| Sbjct: 2469769 ttatttattactgtattag 2469787
>emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in linkage group 7, complete sequence Length = 196531 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 cttatttattactgtatta 176 ||||||||||||||||||| Sbjct: 6622 cttatttattactgtatta 6640
>gb|AC121824.2| Mus musculus BAC clone RP23-467P15 from 18, complete sequence Length = 195027 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 cttatttattactgtatta 176 ||||||||||||||||||| Sbjct: 120207 cttatttattactgtatta 120225
>emb|BX666066.6| Zebrafish DNA sequence from clone CH211-135A19 in linkage group 7, complete sequence Length = 18360 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 atctggttacacacttcactgct 67 |||| |||||||||||||||||| Sbjct: 14308 atctagttacacacttcactgct 14286
>emb|AL160168.11| Human DNA sequence from clone RP11-394O9 on chromosome 9, complete sequence Length = 151202 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 tacccttcactcctgcatt 149 ||||||||||||||||||| Sbjct: 41717 tacccttcactcctgcatt 41699
>emb|AL133549.11| Human DNA sequence from clone RP11-32F11 on chromosome 9p24.1-24.3 Contains the 3'end of the RFX3 gene for regulatory factor X 3 (influences HLA class II expression), a novel gene and a CpG island, complete sequence Length = 162237 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 tgttatgacatgcattgat 46 ||||||||||||||||||| Sbjct: 80851 tgttatgacatgcattgat 80833
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 gcaatggttgcactcttgc 19 ||||||||||||||||||| Sbjct: 22929386 gcaatggttgcactcttgc 22929404
>emb|Z12625.1|LANOD45M L.angustifolius nodulin-45 mRNA Length = 1349 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ccatgcatcttatttaggg 95 ||||||||||||||||||| Sbjct: 1143 ccatgcatcttatttaggg 1125
>emb|X77044.1|LLPLN13 L.luteus pLN-13 mRNA for nodulin-45 Length = 1399 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ccatgcatcttatttaggg 95 ||||||||||||||||||| Sbjct: 1318 ccatgcatcttatttaggg 1300
>emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in linkage group 7, complete sequence Length = 162939 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 158 cttatttattactgtatta 176 ||||||||||||||||||| Sbjct: 150413 cttatttattactgtatta 150395
>gb|AC147267.6| Mus musculus BAC clone RP24-263E13 from chromosome 3, complete sequence Length = 155979 Score = 38.2 bits (19), Expect = 9.7 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 23 aatcgtgttatgacatgcattgatctg 49 |||||||||||||| |||||||||||| Sbjct: 104563 aatcgtgttatgac-tgcattgatctg 104588
>gb|L12388.1|LUPNOD45A Lupinus angustifolius nodulin-45 gene, complete cds Length = 5016 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ccatgcatcttatttaggg 95 ||||||||||||||||||| Sbjct: 4305 ccatgcatcttatttaggg 4287 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,115,382 Number of Sequences: 3902068 Number of extensions: 1115382 Number of successful extensions: 72560 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 72468 Number of HSP's gapped (non-prelim): 94 length of query: 196 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 174 effective length of database: 17,147,199,772 effective search space: 2983612760328 effective search space used: 2983612760328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)