ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF055328.1|AF055328 Hordeum vulgare glucan endo-1,3-beta-gluc... 295 3e-77
2gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-gluco... 163 2e-37
3emb|AJ890250.1| Triticum aestivum partial mRNA for putative gluc... 101 8e-19
4ref|XM_798356.1| Trypanosoma brucei TREU927 hypothetical protein... 40 2.5
5gb|AC157561.10| Mus musculus chromosome 7, clone RP23-356A20, co... 40 2.5
6gb|AC121588.2| Mus musculus chromosome 3 clone RP23-275K22, comp... 38 9.7
7gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
8emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 ... 38 9.7
9emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 38 9.7
10emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in ... 38 9.7
11gb|AC121824.2| Mus musculus BAC clone RP23-467P15 from 18, compl... 38 9.7
12emb|BX666066.6| Zebrafish DNA sequence from clone CH211-135A19 i... 38 9.7
13emb|AL160168.11| Human DNA sequence from clone RP11-394O9 on chr... 38 9.7
14emb|AL133549.11| Human DNA sequence from clone RP11-32F11 on chr... 38 9.7
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
16emb|Z12625.1|LANOD45M L.angustifolius nodulin-45 mRNA 38 9.7
17emb|X77044.1|LLPLN13 L.luteus pLN-13 mRNA for nodulin-45 38 9.7
18emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in ... 38 9.7
19gb|AC147267.6| Mus musculus BAC clone RP24-263E13 from chromosom... 38 9.7
20gb|L12388.1|LUPNOD45A Lupinus angustifolius nodulin-45 gene, com... 38 9.7

>gb|AF055328.1|AF055328 Hordeum vulgare glucan endo-1,3-beta-glucosidase isoenzyme I (BHVG1)
            gene, complete cds
          Length = 3327

 Score =  295 bits (149), Expect = 3e-77
 Identities = 152/153 (99%)
 Strand = Plus / Minus

                                                                        
Query: 44   gatctggttacacacttcactgctgcaatacgtccatgcatcttatttagggcgatatat 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3308 gatctggttacacacttcactgctgcaatacgtccatgcatcttatttaggccgatatat 3249

                                                                        
Query: 104  cgacgtgtacgtatatagtatccacgttacccttcactcctgcattatacgcagcttatt 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 cgacgtgtacgtatatagtatccacgttacccttcactcctgcattatacgcagcttatt 3189

                                             
Query: 164  tattactgtattaggttgacgtacgtacgcatg 196
            |||||||||||||||||||||||||||||||||
Sbjct: 3188 tattactgtattaggttgacgtacgtacgcatg 3156



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>gb|M96938.1|BLYGLCNHI Hordeum vulgare glucan endo-1,3-beta-glucosidase (isoenzyme I) mRNA,
            3' end
          Length = 1025

 Score =  163 bits (82), Expect = 2e-37
 Identities = 82/82 (100%)
 Strand = Plus / Minus

                                                                        
Query: 115  tatatagtatccacgttacccttcactcctgcattatacgcagcttatttattactgtat 174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 tatatagtatccacgttacccttcactcctgcattatacgcagcttatttattactgtat 955

                                  
Query: 175  taggttgacgtacgtacgcatg 196
            ||||||||||||||||||||||
Sbjct: 954  taggttgacgtacgtacgcatg 933



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>emb|AJ890250.1| Triticum aestivum partial mRNA for putative glucan
            endo-1,3-beta-D-glucosidase (wgluc5 gene)
          Length = 1242

 Score =  101 bits (51), Expect = 8e-19
 Identities = 99/114 (86%), Gaps = 7/114 (6%)
 Strand = Plus / Minus

                                                                        
Query: 55   acacttcactgctgcaatacgtccatgcatcttatttagggcga---tatatcgacgtgt 111
            ||||||||||||||||||||||    ||| ||||||||||  ||   ||| |||||||||
Sbjct: 1137 acacttcactgctgcaatacgt----gcagcttatttaggctgacaatatgtcgacgtgt 1082

                                                                  
Query: 112  acgtatatagtatccacgttacccttcactcctgcattatacgcagcttattta 165
            |||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 1081 acgtatattgtacccacgttacacttcactcctgcactatacgcagcttattta 1028



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>ref|XM_798356.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.160.0520)
            partial mRNA
          Length = 4818

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  tcctgcattatacgcagctt 160
            ||||||||||||||||||||
Sbjct: 4241 tcctgcattatacgcagctt 4222



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>gb|AC157561.10| Mus musculus chromosome 7, clone RP23-356A20, complete sequence
          Length = 232927

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 39     gcattgatctggttacacacttca 62
              ||||||||||||||||||| ||||
Sbjct: 106861 gcattgatctggttacacatttca 106884



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>gb|AC121588.2| Mus musculus chromosome 3 clone RP23-275K22, complete sequence
          Length = 189679

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                         
Query: 23     aatcgtgttatgacatgcattgatctg 49
              |||||||||||||| ||||||||||||
Sbjct: 187882 aatcgtgttatgac-tgcattgatctg 187857



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>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0052E20, complete sequence
          Length = 162434

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     gcaatggttgcactcttgc 19
             |||||||||||||||||||
Sbjct: 33399 gcaatggttgcactcttgc 33417



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>emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 in linkage group 7,
            complete sequence
          Length = 208436

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 158  cttatttattactgtatta 176
            |||||||||||||||||||
Sbjct: 1034 cttatttattactgtatta 1052



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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 159     ttatttattactgtattag 177
               |||||||||||||||||||
Sbjct: 2469769 ttatttattactgtattag 2469787



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>emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in linkage group 7,
            complete sequence
          Length = 196531

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 158  cttatttattactgtatta 176
            |||||||||||||||||||
Sbjct: 6622 cttatttattactgtatta 6640



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>gb|AC121824.2| Mus musculus BAC clone RP23-467P15 from 18, complete sequence
          Length = 195027

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 158    cttatttattactgtatta 176
              |||||||||||||||||||
Sbjct: 120207 cttatttattactgtatta 120225



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>emb|BX666066.6| Zebrafish DNA sequence from clone CH211-135A19 in linkage group 7,
             complete sequence
          Length = 18360

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 45    atctggttacacacttcactgct 67
             |||| ||||||||||||||||||
Sbjct: 14308 atctagttacacacttcactgct 14286



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>emb|AL160168.11| Human DNA sequence from clone RP11-394O9 on chromosome 9, complete
             sequence
          Length = 151202

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 131   tacccttcactcctgcatt 149
             |||||||||||||||||||
Sbjct: 41717 tacccttcactcctgcatt 41699



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>emb|AL133549.11| Human DNA sequence from clone RP11-32F11 on chromosome 9p24.1-24.3
             Contains the 3'end of the RFX3 gene for regulatory factor
             X 3 (influences HLA class II expression), a novel gene and
             a CpG island, complete sequence
          Length = 162237

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    tgttatgacatgcattgat 46
             |||||||||||||||||||
Sbjct: 80851 tgttatgacatgcattgat 80833



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 1        gcaatggttgcactcttgc 19
                |||||||||||||||||||
Sbjct: 22929386 gcaatggttgcactcttgc 22929404



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>emb|Z12625.1|LANOD45M L.angustifolius nodulin-45 mRNA
          Length = 1349

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ccatgcatcttatttaggg 95
            |||||||||||||||||||
Sbjct: 1143 ccatgcatcttatttaggg 1125



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>emb|X77044.1|LLPLN13 L.luteus pLN-13 mRNA for nodulin-45
          Length = 1399

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ccatgcatcttatttaggg 95
            |||||||||||||||||||
Sbjct: 1318 ccatgcatcttatttaggg 1300



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>emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in linkage group 7, complete
              sequence
          Length = 162939

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 158    cttatttattactgtatta 176
              |||||||||||||||||||
Sbjct: 150413 cttatttattactgtatta 150395



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>gb|AC147267.6| Mus musculus BAC clone RP24-263E13 from chromosome 3, complete sequence
          Length = 155979

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                         
Query: 23     aatcgtgttatgacatgcattgatctg 49
              |||||||||||||| ||||||||||||
Sbjct: 104563 aatcgtgttatgac-tgcattgatctg 104588



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>gb|L12388.1|LUPNOD45A Lupinus angustifolius nodulin-45 gene, complete cds
          Length = 5016

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ccatgcatcttatttaggg 95
            |||||||||||||||||||
Sbjct: 4305 ccatgcatcttatttaggg 4287


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,115,382
Number of Sequences: 3902068
Number of extensions: 1115382
Number of successful extensions: 72560
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 72468
Number of HSP's gapped (non-prelim): 94
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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