ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart53c05 |
|---|---|
| Clone Library Name | barley_pub |
>EBP2_YEAST (P36049) rRNA-processing protein EBP2 (EBNA1-binding protein| homolog) Length = 427 Score = 32.0 bits (71), Expect = 0.62 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +2 Query: 239 ERIHIGWVPTTNTEHRSIKTRTMFGRHNQQRYHELEREFSWY 364 ER+ + W + EH+S+ + T H + Y + ERE ++Y Sbjct: 206 ERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFY 247
>SERC2_MOUSE (Q8K0E7) Serine incorporator 2 (Tumor differentially expressed| 2-like) Length = 450 Score = 31.2 bits (69), Expect = 1.1 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -2 Query: 290 CFGAQCSLWEPIQCVF--FPC*LC*VETDLRINSIAPLLFVGFSGSLFQPILCSCLLLFP 117 C GA CSL C+ PC LC R ++++ LLF F LF +L S ++L P Sbjct: 4 CLGA-CSLLSCASCLCGSAPCILCGCCPSTRNSTVSRLLFTSF---LFLGVLVSIIMLSP 59 Query: 116 VSVD*SQMLQLIQIC 72 V+ SQ+ +L +C Sbjct: 60 -GVE-SQLYKLPWVC 72
>CT045_HUMAN (Q9Y3B1) Protein C20orf45| Length = 194 Score = 31.2 bits (69), Expect = 1.1 Identities = 22/80 (27%), Positives = 34/80 (42%) Frame = +3 Query: 168 KPHEQQRGDGIYSQVCFHLTKLTRKEYTLDGFPQRTLSTEA*KHGRCSDDTINKDTMS*S 347 KPH Q + +Q K L+G T+S+ A K + I+K Sbjct: 113 KPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAEIE 172 Query: 348 ESSAGTKGIGRHPLAASSLA 407 E +A +G R P+AA++ A Sbjct: 173 ELTASARGTIRTPMAAAAFA 192
>CT045_MOUSE (Q9CYY7) Protein C20orf45 homolog| Length = 195 Score = 30.4 bits (67), Expect = 1.8 Identities = 22/83 (26%), Positives = 36/83 (43%) Frame = +3 Query: 153 KKATRKPHEQQRGDGIYSQVCFHLTKLTRKEYTLDGFPQRTLSTEA*KHGRCSDDTINKD 332 ++ T KPH Q + +Q K L+G T+S+ A K + I+K Sbjct: 108 ERLTYKPHLQDPEKTVLTQEALITVKGVSLSSYLEGLMASTISSNASKGREAMEWVIHKL 167 Query: 333 TMS*SESSAGTKGIGRHPLAASS 401 E +A +G R P+AA++ Sbjct: 168 NAEIEELAASARGSIRTPMAAAA 190
>SRD3_CAEEL (O17240) Serpentine receptor class delta-3 (Protein srd-3)| Length = 344 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -3 Query: 175 WGFLVAFFSQYCVHACSFSQLVWINLKCFN*YKYVYF*SRET 50 WG LV + C A +FS +V++ + CF Y + F +T Sbjct: 186 WGDLVIAGNMSCWSAATFSAIVYMTIPCFPIYGVIVFFRHKT 227
>UBID_NEIMA (Q9JT68) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)| (Polyprenyl p-hydroxybenzoate decarboxylase) Length = 492 Score = 28.9 bits (63), Expect = 5.3 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +3 Query: 78 LYQLKHLRLIHTNWEKEQA*TQYWLKKATRKPHEQQRGDGIYSQVCFHLTKL 233 LYQL I W ++ A W TR PH++++ GIY Q + KL Sbjct: 144 LYQLP----IQHCWPEDVAPLVTWGLTVTRGPHKKRQNLGIYRQQLIGINKL 191
>MED12_HUMAN (Q93074) Mediator of RNA polymerase II transcription subunit 12| (Thyroid hormone receptor-associated protein complex 230 kDa component) (Trap230) (Activator-recruited cofactor 240 kDa component) (ARC240) (CAG repeat protein 45) (OPA-containin Length = 2212 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = +2 Query: 122 KGAGMNTILAEKGYQKTPRTTKGRWNLFSGLFPLNKVNTERIHIGWVPTTNTEHR 286 K AG ++I ++G Q + + W+LF GL P + + GW T + R Sbjct: 1699 KIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKP-----SAPLSWGWFGTVRVDRR 1748
>Y456_MYCPU (Q98QB0) UPF0135 protein MYPU_4560| Length = 251 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +3 Query: 39 FANQVSRDQKYTYLYQLK-HLRLIHTNWEKEQA*TQYWLKK 158 FAN +++ Y L +LK + +HTN++ ++ T YW+ K Sbjct: 75 FANFPYKEKIYNKLVKLKISVYSLHTNFDADKQGTSYWVAK 115
>HXT10_YEAST (P43581) Hexose transporter HXT10| Length = 546 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -3 Query: 175 WGFLVAFFSQYCVHACSFSQ-LVWINLKCFN*YKYVYF*SRET 50 WGFL+ FF+ + + FS V++ F+ Y YV+F ET Sbjct: 459 WGFLIGFFTPFITRSIGFSYGYVFMGCLIFS-YFYVFFFVCET 500
>HXT8_YEAST (P40886) Hexose transporter HXT8| Length = 569 Score = 28.1 bits (61), Expect = 9.0 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -3 Query: 175 WGFLVAFFSQYCVHACSFSQ-LVWINLKCFN*YKYVYF*SRET 50 WGFL+ FF+ + A +F V++ F+ Y YV+F ET Sbjct: 477 WGFLIGFFTPFITSAINFYYGYVFMGCLAFS-YFYVFFFVPET 518
>UBID_ECOLI (P0AAB4) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)| (Polyprenyl p-hydroxybenzoate decarboxylase) Length = 497 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 105 IHTNWEKEQA*TQYWLKKATRKPHEQQRGDGIYSQVCFHLTKL 233 I T W ++ A W TR PH++++ GIY Q KL Sbjct: 147 IMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKL 189
>UBID_ECOL6 (P0AAB5) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)| (Polyprenyl p-hydroxybenzoate decarboxylase) Length = 497 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 105 IHTNWEKEQA*TQYWLKKATRKPHEQQRGDGIYSQVCFHLTKL 233 I T W ++ A W TR PH++++ GIY Q KL Sbjct: 147 IMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKL 189
>UBID_ECO57 (P58194) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)| (Polyprenyl p-hydroxybenzoate decarboxylase) Length = 497 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 105 IHTNWEKEQA*TQYWLKKATRKPHEQQRGDGIYSQVCFHLTKL 233 I T W ++ A W TR PH++++ GIY Q KL Sbjct: 147 IMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKL 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,293,077 Number of Sequences: 219361 Number of extensions: 1285449 Number of successful extensions: 2404 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2368 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2404 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
