ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart53c03 |
|---|---|
| Clone Library Name | barley_pub |
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 63.9 bits (154), Expect = 9e-11 Identities = 34/64 (53%), Positives = 42/64 (65%) Frame = -2 Query: 377 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLMEQRDRRSESMAKRRSKLSAATKAP 198 LTLQ S+AA+YQKLLA RL EQRDRRSES+AK+RS+LS+A P Sbjct: 187 LTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLSSAAAKP 246 Query: 197 AVSA 186 +V+A Sbjct: 247 SVTA 250
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 63.5 bits (153), Expect = 1e-10 Identities = 39/65 (60%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Frame = -2 Query: 377 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLMEQRDRRSESMAKRRSKLS-AATKA 201 LTLQ KSEAAEYQKLLA RL EQRDRRSES+AK+RS+LS AA K Sbjct: 187 LTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLSAAAAKT 246 Query: 200 PAVSA 186 +VSA Sbjct: 247 ASVSA 251
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 62.8 bits (151), Expect = 2e-10 Identities = 36/64 (56%), Positives = 45/64 (70%) Frame = -2 Query: 377 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLMEQRDRRSESMAKRRSKLSAATKAP 198 LTLQ KSEAAEYQKLLA RL EQR++RSES+AK+RS+LSAA+K P Sbjct: 137 LTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRLSAASK-P 195 Query: 197 AVSA 186 +++A Sbjct: 196 SIAA 199
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 60.1 bits (144), Expect = 1e-09 Identities = 32/63 (50%), Positives = 39/63 (61%) Frame = -2 Query: 377 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLMEQRDRRSESMAKRRSKLSAATKAP 198 LTLQ S+AA+YQKLLA RL EQRDRRSES+AK+RS+LS+A P Sbjct: 187 LTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLSSAPAKP 246 Query: 197 AVS 189 + Sbjct: 247 VAA 249
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 311 EAAEYQKLLAQRLMEQRDRRSESMAKRR--SKLSAAT 207 EAAEY KLLA+R+ E +++R E +AKRR S L A+T Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 311 EAAEYQKLLAQRLMEQRDRRSESMAKRR--SKLSAAT 207 EAAEY KLLA+R+ E +++R E +AKRR S L A+T Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 311 EAAEYQKLLAQRLMEQRDRRSESMAKRR--SKLSAAT 207 EAAEY KLLA+R+ E +++R E +AKRR S L A+T Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/28 (64%), Positives = 23/28 (82%) Frame = -2 Query: 311 EAAEYQKLLAQRLMEQRDRRSESMAKRR 228 EAAEY KLLA+RL E +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 311 EAAEYQKLLAQRLMEQRDRRSESMAKRR--SKLSAAT 207 EA+EY KLLA+R+ E +++R E +AKRR S L A+T Sbjct: 205 EASEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = -2 Query: 311 EAAEYQKLLAQRLMEQRDRRSESMAKRR--SKLSAAT 207 EAA+Y KLLA+R+ E +++R E +AKRR S L A+T Sbjct: 205 EAADYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 2/37 (5%) Frame = -2 Query: 311 EAAEYQKLLAQRLMEQRDRRSESMAKRR--SKLSAAT 207 EA+EY KLLA+R E +++R E +AKRR S L A+T Sbjct: 205 EASEYAKLLAKRSKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 33.9 bits (76), Expect = 0.098 Identities = 19/43 (44%), Positives = 25/43 (58%) Frame = -2 Query: 314 SEAAEYQKLLAQRLMEQRDRRSESMAKRRSKLSAATKAPAVSA 186 S A+Y KLLAQR E + RR E + +RRS +K+ SA Sbjct: 208 SAEADYAKLLAQRKKESKVRRQEEIKRRRSASMRDSKSSNQSA 250
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = -2 Query: 308 AAEYQKLLAQRLMEQRDRRSESMAKRRSKLSA 213 AAEY +LLAQRL E++ R+E +R S L A Sbjct: 205 AAEYAQLLAQRLHERKAERAEIKKRRASSLKA 236
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 32.3 bits (72), Expect = 0.29 Identities = 15/32 (46%), Positives = 23/32 (71%) Frame = -2 Query: 308 AAEYQKLLAQRLMEQRDRRSESMAKRRSKLSA 213 AAEY +LLA+RL E++ ++E+ +R S L A Sbjct: 205 AAEYAQLLAKRLAERKAEKAETRKRRASSLKA 236
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 32.0 bits (71), Expect = 0.37 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = -2 Query: 302 EYQKLLAQRLMEQRDRRSESMAKRRSKLSAATKAPAVSA 186 +Y KLLAQR E + RR E + +RRS +K+ SA Sbjct: 212 DYAKLLAQRKKESKVRRQEELKRRRSASMRDSKSSDKSA 250
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 32.0 bits (71), Expect = 0.37 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = -2 Query: 308 AAEYQKLLAQRLMEQRDRRSESMAKRRSKLSA 213 AAEY +LLA+RL E++ ++E +R S L A Sbjct: 205 AAEYAQLLAKRLTEKKAEKAEERKRRASSLKA 236
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = -2 Query: 308 AAEYQKLLAQRLMEQRDRRSESMAKRRSKLSA 213 AAEY +LLA+RL E++ ++E +R S L A Sbjct: 205 AAEYAQLLAKRLSERKAEKAEIRKRRASSLKA 236
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = -2 Query: 308 AAEYQKLLAQRLMEQRDRRSESMAKRRSKLSA 213 AAEY +LLA+RL E++ ++E +R S L A Sbjct: 205 AAEYAQLLAKRLSERKAEKAEVRKRRASSLKA 236
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -2 Query: 308 AAEYQKLLAQRLMEQRDRRSESMAKRRSKL 219 AAEY +LLA+R+ E++ ++E +R S L Sbjct: 206 AAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235
>PEPF_MYCPN (P54125) Oligoendopeptidase F homolog (EC 3.4.24.-)| Length = 611 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = +2 Query: 50 GTMFTQNSINYNSTTLKVAARFISSNKVLETLSPL*LITKDCKHLKQRQPEPWWQQTAST 229 GT+ + +S L RF+SS L L + L+ D QPEPW + A Sbjct: 538 GTLVGKKLSAGDSNMLAAYKRFLSSGSTLPPLETIKLLGIDLT-----QPEPWQEAHAEL 592 Query: 230 SSW 238 W Sbjct: 593 KRW 595
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -2 Query: 308 AAEYQKLLAQRLMEQRDRRSESMAKRRSKLSAATKAPAVSA 186 +A+Y KLL QR E + +R E AKRR S +VS+ Sbjct: 207 SADYAKLLVQRKKESKAKREE--AKRRRSASIRESKSSVSS 245
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = -2 Query: 305 AEYQKLLAQRLMEQRDRRSE-SMAKRRSK 222 AEY KLLAQR+ E ++R+ E + RSK Sbjct: 208 AEYTKLLAQRMKEAKERKMERKRSNSRSK 236
>RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10)| Length = 235 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -2 Query: 308 AAEYQKLLAQRLMEQRDRRSESMAKRRSKLSAA 210 AAEY +LLA+RL E R++E +R S L AA Sbjct: 205 AAEYAQLLAKRLAE---RKAEVRKRRASSLKAA 234
>MA2A2_HUMAN (P49641) Alpha-mannosidase IIx (EC 3.2.1.114)| (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase) (MAN IIx) (Mannosidase alpha class 2A member 2) Length = 1139 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%) Frame = +2 Query: 203 PWWQQ-TASTSSWPCS 247 PWW T ST SWPC+ Sbjct: 872 PWWTSGTTSTRSWPCT 887
>MSC1_YEAST (Q03104) Meiotic sister chromatid recombination protein 1| Length = 513 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +2 Query: 185 KQRQPEPWWQQTASTSS 235 K QP+PWWQ +S SS Sbjct: 68 KHAQPKPWWQVWSSDSS 84
>DCTN4_RAT (Q9QUR2) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 302 EYQKLLAQRLMEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSL 168 EY + LAQ+ +RDR+ +A+RR+ + A + D YSL Sbjct: 149 EYYQQLAQKEKVERDRKK--LARRRNYMPLAFSQHTIHVVDKYSL 191
>DCTN4_MOUSE (Q8CBY8) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 302 EYQKLLAQRLMEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSL 168 EY + LAQ+ +RDR+ +A+RR+ + A + D YSL Sbjct: 149 EYYQQLAQKEKVERDRKK--LARRRNYMPLAFSQHTIHVVDKYSL 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,797,274 Number of Sequences: 219361 Number of extensions: 597444 Number of successful extensions: 1485 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1485 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
